Update readme with new links.

[bendhouseart]

This reference is out of date:

PET_pipelines/pet_nipype/README.md

Line 274 in f77ffdb

git clone https://github.com/openneuropet/petpipeline.git

Update instructions and test usage.

[bendhouseart]

Found thanks to @MrNuyoah:

I have tried multiple times to execute the installation guide's command: git clone https://github.com/openneuropet/petpipeline.git

Unfortunately, all attempts have failed. I also tried directly accessing the repository address: https://github.com/openneuropet/petpipeline, but it shows a "404 Not Found" error. Could you please help me resolve this issue? I would be very grateful.

[bendhouseart]

@MrNuyoah I updated the readme instructions to work with some of the changes made to the repo. The instructions now state to run:

git clone https://github.com/openneuropet/PET_pipelines.git

and the install command has been updated as well:

cd PET_pipelines/pet_nipype
pip install -e .

Please let me know if you are able to proceed using the instructions in the updated readme. Alternatively, we do have some slightly more polished pipelines that might be able to accomplish your aims,see below for more details:

1. A BIDS defacing and coregistration pipeline at openneuropet/petdeface
2. A BIDS Motion correction pipeline at mnoergaard/petprep_hmc
3. A BIDS time activity curve extraction pipeline at mnoergaard/petprep_extract_tacs

Feel free to reach out to me here over email at [email protected]

Thanks!

[MrNuyoah]

@MrNuyoah I updated the readme instructions to work with some of the changes made to the repo. The instructions now state to run:

git clone https://github.com/openneuropet/PET_pipelines.git

and the install command has been updated as well:

cd PET_pipelines/pet_nipype
pip install -e .

Please let me know if you are able to proceed using the instructions in the updated readme. Alternatively, we do have some slightly more polished pipelines that might be able to accomplish your aims,see below for more details:

1. A BIDS defacing and coregistration pipeline at openneuropet/petdeface
2. A BIDS Motion correction pipeline at mnoergaard/petprep_hmc
3. A BIDS time activity curve extraction pipeline at mnoergaard/petprep_extract_tacs

Feel free to reach out to me here over email at [email protected]

Thanks!

Thank you very much for your explanation! As per the update you provided, I am now able to install it successfully. I will also review and learn from your other projects. Wishing you all the best in life.