Home

Welcome to the PET2BIDS wiki!

Documentation

The documentation is right there in the main README.md with more details for each language specific application: python README.md and matlab Readme.md.

Similar documentation with examples is also online @ https://pet2bids.readthedocs.io/en/latest/

Validation and user testing

Our testing set

ecat validator

For data that use ECAT format, we have validated our tools by creating an ecat synthetic data using golden_ecat.py allowing to write data with known values and making sure headers and data are read properly. More information can be found in our repository here.

phantom data

We have collected phantoms data and tested conversion for the following PET scanners:

Testing sites

Data have been successfully converted in labs that created PET2BIDS:

• NRU
• NIMH Other sites that used and converted data with PET2BIDS
• Martinos centre MGH
• Georgia tech
• Karolinska Institute
• KCL
• Mainz
• Amsterdam
• Standford
• Liege
• Medicine University of Vienna, Austria (Matej Murgaš @murgysc)