diff --git a/Makefile b/Makefile index be9c8063..ef1b26d9 100644 --- a/Makefile +++ b/Makefile @@ -32,8 +32,7 @@ buildpackage: @cd pypet2bids && poetry lock && poetry build publish: - @cd pypet2bids - @poetry publish + @cd pypet2bids && poetry publish installpoetry: @cd scripts && ./installpoetry diff --git a/scripts/python_conversions.sh b/scripts/python_conversions.sh index f87c8ed3..34c7ca4e 100644 --- a/scripts/python_conversions.sh +++ b/scripts/python_conversions.sh @@ -139,7 +139,7 @@ echo "${SOURCE_FOLDER}/PhilipsGeminiPETMR-Unimedizin/reqCTAC" dcm2niix4pet $SOURCE_FOLDER/PhilipsGeminiPETMR-Unimedizin/reqCTAC --destination-path $DESTINATION/sub-PhilipsGeminiUnimedizinMainz/pet \ --kwargs \ Manufacturer="Philips Medical Systems" \ -ManufacturersModelName="PET/CT Gemini TF16" +ManufacturersModelName="PET/CT Gemini TF16" \ InstitutionName="Unimedizin, Mainz, DE" \ BodyPart="Phantom" \ Units="Bq/mL" \ @@ -156,14 +156,17 @@ ReconFilterSize=0 \ AttenuationCorrection="CTAC-SG" \ ScatterCorrectionMethod="SS-SIMUL" \ ReconstructionMethod="LOR-RAMLA" \ -ReconMethodParameterValues="[1,1]" - FrameDuration=[1798] \ +ReconMethodParameterValues="[1,1]" \ +FrameDuration=[1798] \ +ReconMethodParameterLabels="[none, none]" \ +ReconMethodParameterUnits="[none, none]" \ +FrameTimesStart=[0] \ echo "${SOURCE_FOLDER}/PhilipsGeminiPETMR-Unimedizin/reqNAC" dcm2niix4pet $SOURCE_FOLDER/PhilipsGeminiPETMR-Unimedizin/reqNAC --destination-path $DESTINATION/sub-PhilipsGeminiNACUnimedizinMainz/pet \ --kwargs \ Manufacturer="Philips Medical Systems" \ -ManufacturersModelName="PET/CT Gemini TF16" +ManufacturersModelName="PET/CT Gemini TF16" \ InstitutionName="Unimedizin, Mainz, DE" \ BodyPart="Phantom" \ Units="Bq/mL" \ @@ -179,8 +182,13 @@ ReconFilterType=None \ ReconFilterSize=0 \ AttenuationCorrection="None" \ ScatterCorrectionMethod="None" \ -ReconstructionMethod="3D-RAMLA" +ReconstructionMethod="3D-RAMLA" \ FrameDuration=[1798] \ +ReconMethodParameterLabels="[none, none]" \ +ReconMethodParameterUnits="[none, none]" \ +ReconMethodParameterValues="[1,1]" \ +FrameTimesStart=[0] \ + # Amsterdam UMC # ---------------------------