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Protonated carbonyl parameters #64

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bannanc opened this issue Nov 18, 2017 · 0 comments
Open

Protonated carbonyl parameters #64

bannanc opened this issue Nov 18, 2017 · 0 comments

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@bannanc
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bannanc commented Nov 18, 2017

Protonated carbonyl groups are certainly a corner case we don't see very often, but when looking into issue #62 I suggested this:

Since I'm looking at this section, I think #6X3:1-[#8X2H0:2] should be #6X3:1-[#8X2H0:2] or #6X3:1-[#8X2H0:2] so that it would match the corresponding bond if the carbonyl oxygen was protonated. 

This was drawn to my attention as there are cases for the C=O in a protonated carbonyl, but not for the C-O if the carbonyl was protonated in as ester. I don't actually have a molecule in any set that suggests this is something we should be worried about yet.

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