Who is using Genome Maps

Projects using Genome Maps

Here you can find some projects and tools using Genome Maps that we are aware, if you are using it please let us know sending an email to [email protected]

ICGC

Genome Maps is used by the International Cancer Genome Consortium (ICGC) to display and browse cancer mutations at gene and genomic level. You can find an example at: https://dcc.icgc.org/browser/g?filters=%7B%7D

EMBL - Chaetomium thermophilum genome viewer

Chaetomium thermophilum genome resource uses Genome Maps technology for its genome browser, you can see it at http://ct.bork.embl.de/ctbrowser/

BierApp

BierApp is a gene/variant prioritization. This interactive tool allows finding genes affected by deleterious variants that segregate along family pedigrees, case-controls or sporadic samples. BierApp uses Genome Maps to visualize variants from the VCFs uploaded, you can login and try BierApp at http://bierapp.babelomics.org/

CIBERER Spanish Variant Server

The CIBERER Spanish Variant Server (CSVS) provides information about the variability of the Spanish population to the scientific/medical community. It is useful for filtering polymorphisms and local variations in the process of prioritizing candidate disease genes. CSVS currently stores information on 578 unrelated Spanish individuals, it is available at http://csvs.babelomics.org/

University of Cambridge

University of Cambridge hosts a default installation for users to browse different genomes and assemblies. It can also brose VCF and BAM data from 1000G Phase project by using a demo OpenCGA installation, it is available at:

http://genomemaps.org/