diff --git a/Gemfile b/Gemfile index 82554462..d698f63b 100644 --- a/Gemfile +++ b/Gemfile @@ -45,7 +45,7 @@ gem 'redcarpet' # NCBO gems (can be from a local dev path or from rubygems/git) gem 'goo', github: 'ontoportal-lirmm/goo', branch: 'development' -gem 'ncbo_annotator', git: 'https://github.com/ontoportal-lirmm/ncbo_annotator.git', branch: 'master' +gem 'ncbo_annotator', git: 'https://github.com/ontoportal-lirmm/ncbo_annotator.git', branch: 'development' gem 'ncbo_cron', git: 'https://github.com/ontoportal-lirmm/ncbo_cron.git', branch: 'master' gem 'ncbo_ontology_recommender', git: 'https://github.com/ncbo/ncbo_ontology_recommender.git', branch: 'master' gem 'sparql-client', github: 'ontoportal-lirmm/sparql-client', branch: 'master' diff --git a/Gemfile.lock b/Gemfile.lock index 5849b1c8..4d7879cd 100644 --- a/Gemfile.lock +++ b/Gemfile.lock @@ -11,13 +11,16 @@ GIT GIT remote: https://github.com/ontoportal-lirmm/goo.git - revision: f8aeea33e270960afb530064d616eaf8343b5473 + revision: cb03c4888cc95006e653eb70dd29ee69901dd6cd branch: development specs: goo (0.0.2) addressable (~> 2.8) pry - rdf (= 1.0.8) + rdf (= 3.2.11) + rdf-raptor + rdf-rdfxml + rdf-vocab redis rest-client rsolr @@ -26,8 +29,8 @@ GIT GIT remote: https://github.com/ontoportal-lirmm/ncbo_annotator.git - revision: 57204d8e54432ba660af4c49806e2a3019a23fa2 - branch: master + revision: 1eb751b65d10ae23d45c74e0516c78754a8419f0 + branch: development specs: ncbo_annotator (0.0.1) goo @@ -37,7 +40,7 @@ GIT GIT remote: https://github.com/ontoportal-lirmm/ncbo_cron.git - revision: f33a917aae2000270d5b560cadf7044bff822779 + revision: 9ec0147203007cc368a5119ffe1a019fa8701c14 branch: master specs: ncbo_cron (0.0.1) @@ -54,7 +57,7 @@ GIT GIT remote: https://github.com/ontoportal-lirmm/ontologies_linked_data.git - revision: 0de5f3b2db02a5d2c008ace73a34d586c24e67a7 + revision: c9b8b42b09f9a734507965a9529809ea581ef58a branch: development specs: ontologies_linked_data (0.0.1) @@ -109,6 +112,7 @@ GEM airbrussh (1.5.1) sshkit (>= 1.6.1, != 1.7.0) backports (3.24.1) + base64 (0.2.0) bcrypt (3.1.20) bcrypt_pbkdf (1.1.0) bigdecimal (1.4.2) @@ -127,7 +131,7 @@ GEM sshkit (~> 1.3) coderay (1.1.3) concurrent-ruby (1.2.3) - crack (0.4.6) + crack (1.0.0) bigdecimal rexml cube-ruby (0.0.3) @@ -171,15 +175,15 @@ GEM grpc (~> 1.59) get_process_mem (0.2.7) ffi (~> 1.0) - google-analytics-data (0.5.0) + google-analytics-data (0.6.0) google-analytics-data-v1beta (>= 0.11, < 2.a) google-cloud-core (~> 1.6) - google-analytics-data-v1beta (0.11.2) + google-analytics-data-v1beta (0.12.0) gapic-common (>= 0.21.1, < 2.a) google-cloud-errors (~> 1.0) - google-apis-analytics_v3 (0.14.0) - google-apis-core (>= 0.12.0, < 2.a) - google-apis-core (0.13.0) + google-apis-analytics_v3 (0.15.0) + google-apis-core (>= 0.14.0, < 2.a) + google-apis-core (0.14.0) addressable (~> 2.5, >= 2.5.1) googleauth (~> 1.9) httpclient (>= 2.8.1, < 3.a) @@ -193,31 +197,32 @@ GEM google-cloud-env (2.1.1) faraday (>= 1.0, < 3.a) google-cloud-errors (1.3.1) - google-protobuf (3.25.2-x86_64-darwin) - google-protobuf (3.25.2-x86_64-linux) - googleapis-common-protos (1.4.0) - google-protobuf (~> 3.14) - googleapis-common-protos-types (~> 1.2) - grpc (~> 1.27) - googleapis-common-protos-types (1.11.0) + google-protobuf (3.25.3-x86_64-darwin) + google-protobuf (3.25.3-x86_64-linux) + googleapis-common-protos (1.5.0) + google-protobuf (~> 3.18) + googleapis-common-protos-types (~> 1.7) + grpc (~> 1.41) + googleapis-common-protos-types (1.13.0) google-protobuf (~> 3.18) - googleauth (1.9.2) + googleauth (1.11.0) faraday (>= 1.0, < 3.a) google-cloud-env (~> 2.1) jwt (>= 1.4, < 3.0) multi_json (~> 1.11) os (>= 0.9, < 2.0) signet (>= 0.16, < 2.a) - grpc (1.61.0-x86_64-darwin) + grpc (1.62.0-x86_64-darwin) google-protobuf (~> 3.25) googleapis-common-protos-types (~> 1.0) - grpc (1.61.0-x86_64-linux) + grpc (1.62.0-x86_64-linux) google-protobuf (~> 3.25) googleapis-common-protos-types (~> 1.0) haml (5.2.2) temple (>= 0.8.0) tilt hashdiff (1.1.0) + htmlentities (4.3.4) http-accept (1.7.0) http-cookie (1.0.5) domain_name (~> 0.5) @@ -228,9 +233,11 @@ GEM json-schema (2.8.1) addressable (>= 2.4) json_pure (2.7.1) - jwt (2.7.1) + jwt (2.8.0) + base64 kgio (2.11.4) libxml-ruby (5.0.2) + link_header (0.0.8) logger (1.6.0) macaddr (1.7.2) systemu (~> 2.6.5) @@ -242,17 +249,17 @@ GEM method_source (1.0.0) mime-types (3.5.2) mime-types-data (~> 3.2015) - mime-types-data (3.2023.1205) + mime-types-data (3.2024.0206) mini_mime (1.1.5) minitest (4.7.5) minitest-stub_any_instance (1.0.3) mlanett-redis-lock (0.2.7) redis multi_json (1.15.0) - multipart-post (2.3.0) + multipart-post (2.4.0) mutex_m (0.2.0) net-http-persistent (2.9.4) - net-imap (0.4.9.1) + net-imap (0.4.10) date net-protocol net-pop (0.1.2) @@ -288,7 +295,7 @@ GEM rack (>= 0.4) rack-cors (1.0.6) rack (>= 1.6.0) - rack-mini-profiler (3.3.0) + rack-mini-profiler (3.3.1) rack (>= 1.2.0) rack-protection (1.5.5) rack @@ -297,8 +304,21 @@ GEM rack-timeout (0.6.3) raindrops (0.20.1) rake (10.5.0) - rdf (1.0.8) - addressable (>= 2.2) + rdf (3.2.11) + link_header (~> 0.0, >= 0.0.8) + rdf-raptor (3.2.0) + ffi (~> 1.15) + rdf (~> 3.2) + rdf-rdfxml (3.2.2) + builder (~> 3.2) + htmlentities (~> 4.3) + rdf (~> 3.2) + rdf-xsd (~> 3.2) + rdf-vocab (3.2.7) + rdf (~> 3.2, >= 3.2.4) + rdf-xsd (3.2.1) + rdf (~> 3.2) + rexml (~> 3.2) redcarpet (3.6.0) redis (4.8.1) redis-activesupport (5.3.0) @@ -313,7 +333,7 @@ GEM declarative (< 0.1.0) trailblazer-option (>= 0.1.1, < 0.2.0) uber (< 0.2.0) - request_store (1.5.1) + request_store (1.6.0) rack (>= 1.4) rest-client (2.1.0) http-accept (>= 1.7.0, < 2.0) @@ -330,7 +350,7 @@ GEM rubyzip (2.3.2) rufus-scheduler (2.0.24) tzinfo (>= 0.3.22) - signet (0.18.0) + signet (0.19.0) addressable (~> 2.8) faraday (>= 0.17.5, < 3.a) jwt (>= 1.5, < 3.0) @@ -378,7 +398,7 @@ GEM unicorn (>= 4, < 7) uuid (2.3.9) macaddr (~> 1.0) - webmock (3.19.1) + webmock (3.23.0) addressable (>= 2.8.0) crack (>= 0.3.2) hashdiff (>= 0.4.0, < 2.0.0)