diff --git a/src/Compiler/CompilerPasses.cpp b/src/Compiler/CompilerPasses.cpp
index 231b241c5e..5561955304 100644
--- a/src/Compiler/CompilerPasses.cpp
+++ b/src/Compiler/CompilerPasses.cpp
@@ -276,6 +276,10 @@ void addKrnlToLLVMPasses(
   // pm.addNestedPass<func::FuncOp>(krnl::createConvertSeqToMemrefPass());
 
   pm.addPass(mlir::memref::createFoldMemRefAliasOpsPass());
+
+  if (profileIR)
+    pm.addNestedPass<func::FuncOp>(onnx_mlir::createInstrumentCleanupPass());
+
   if (enableBoundCheck)
     pm.addPass(mlir::createGenerateRuntimeVerificationPass());
   pm.addPass(krnl::createConvertKrnlToLLVMPass(verifyInputTensors,
diff --git a/src/Pass/Passes.hpp b/src/Pass/Passes.hpp
index 3062e0abe8..f22cbf2595 100644
--- a/src/Pass/Passes.hpp
+++ b/src/Pass/Passes.hpp
@@ -57,6 +57,8 @@ std::unique_ptr<mlir::Pass> createConstPropONNXToONNXPass();
 std::unique_ptr<mlir::Pass> createInstrumentPass();
 std::unique_ptr<mlir::Pass> createInstrumentPass(
     const std::string &ops, unsigned actions);
+/// Pass for instrument cleanup.
+std::unique_ptr<mlir::Pass> createInstrumentCleanupPass();
 
 /// Passes for instrumenting the ONNX ops to print their operand type
 /// signatures at runtime.
diff --git a/src/Tools/onnx-mlir-opt/RegisterPasses.cpp b/src/Tools/onnx-mlir-opt/RegisterPasses.cpp
index deb0783bd0..671dea1857 100644
--- a/src/Tools/onnx-mlir-opt/RegisterPasses.cpp
+++ b/src/Tools/onnx-mlir-opt/RegisterPasses.cpp
@@ -70,6 +70,10 @@ void registerOMPasses(int optLevel) {
   mlir::registerPass(
       []() -> std::unique_ptr<mlir::Pass> { return createInstrumentPass(); });
 
+  mlir::registerPass([]() -> std::unique_ptr<mlir::Pass> {
+    return createInstrumentCleanupPass();
+  });
+
   mlir::registerPass([]() -> std::unique_ptr<mlir::Pass> {
     return createInstrumentONNXSignaturePass("NONE");
   });
diff --git a/src/Transform/CMakeLists.txt b/src/Transform/CMakeLists.txt
index cc51752de0..c09d9fb571 100644
--- a/src/Transform/CMakeLists.txt
+++ b/src/Transform/CMakeLists.txt
@@ -20,6 +20,7 @@ add_onnx_mlir_library(OMScfParallelPrivateRegion
 
 add_onnx_mlir_library(OMInstrument
   InstrumentPass.cpp
+  InstrumentCleanupPass.cpp
 
   INCLUDE_DIRS PUBLIC
   ${ONNX_MLIR_SRC_ROOT}/include
diff --git a/src/Transform/InstrumentCleanupPass.cpp b/src/Transform/InstrumentCleanupPass.cpp
new file mode 100644
index 0000000000..8cc8a94609
--- /dev/null
+++ b/src/Transform/InstrumentCleanupPass.cpp
@@ -0,0 +1,113 @@
+/*
+ * SPDX-License-Identifier: Apache-2.0
+ */
+
+//===------- InstrumentCleanupPass.cpp - Instrumentation -----------------===//
+//
+// Copyright 2025 The IBM Research Authors.
+//
+// =============================================================================
+//
+// This file implements a Function level pass that remove consecutive
+// instrumentation operations (first with "before" tag and second with "after")
+// as they do not measure anything.
+//
+//===----------------------------------------------------------------------===//
+
+#include <regex>
+#include <set>
+#include <string>
+
+#include "onnx-mlir/Compiler/OMCompilerRuntimeTypes.h"
+#include "onnx-mlir/Compiler/OMCompilerTypes.h"
+
+#include "mlir/Dialect/Func/IR/FuncOps.h"
+#include "mlir/IR/BuiltinTypes.h"
+#include "mlir/Interfaces/CallInterfaces.h"
+#include "mlir/Pass/Pass.h"
+#include "llvm/ADT/SmallPtrSet.h"
+#include "llvm/Support/raw_ostream.h"
+
+#include "src/Compiler/OptionUtils.hpp"
+#include "src/Dialect/Krnl/KrnlOps.hpp"
+#include "src/Interface/ShapeInferenceOpInterface.hpp"
+#include "src/Pass/Passes.hpp"
+
+using namespace mlir;
+
+namespace onnx_mlir {
+
+/*!
+ * This pass insert KrnlInstrumentOp before and after each ops
+ */
+
+class InstrumentCleanupPass : public mlir::PassWrapper<InstrumentCleanupPass,
+                                  OperationPass<func::FuncOp>> {
+
+public:
+  MLIR_DEFINE_EXPLICIT_INTERNAL_INLINE_TYPE_ID(InstrumentCleanupPass)
+
+  InstrumentCleanupPass(){};
+  InstrumentCleanupPass(const InstrumentCleanupPass &pass)
+      : mlir::PassWrapper<InstrumentCleanupPass,
+            OperationPass<func::FuncOp>>() {}
+
+private:
+public:
+  StringRef getArgument() const override { return "instrument-cleanup"; }
+
+  StringRef getDescription() const override {
+    return "instrument cleanup on ops.";
+  }
+
+  void runOnOperation() override {
+    llvm::SmallVector<Operation *> eraseOpList;
+    bool skipNext = false;
+
+    // Iterate on the operations nested in this function
+    getOperation().walk([&](mlir::Operation *op) -> WalkResult {
+      if (skipNext) {
+        skipNext = false;
+        return WalkResult::advance();
+      }
+      KrnlInstrumentOp firstInstrOp = mlir::dyn_cast<KrnlInstrumentOp>(op);
+      // Check if we have a first instrumentation op with instr before.
+      if (!firstInstrOp)
+        return WalkResult::advance();
+      uint64_t firstTag = firstInstrOp.getTag();
+      // skip if not before, or if this call initializes the instrumentation.
+      if (!IS_INSTRUMENT_BEFORE_OP(firstTag) || IS_INSTRUMENT_INIT(firstTag))
+        return WalkResult::advance();
+      // Check if we have a second instrumentation op with instr after.
+      Operation *nextOp = op->getNextNode();
+      if (!nextOp)
+        return WalkResult::advance();
+      KrnlInstrumentOp secondInstrOp = mlir::dyn_cast<KrnlInstrumentOp>(nextOp);
+      if (!secondInstrOp)
+        return WalkResult::advance();
+      uint64_t secondTag = secondInstrOp.getTag();
+      // skip if not after, or if this call initializes the instrumentation.
+      if (!IS_INSTRUMENT_AFTER_OP(secondTag) || IS_INSTRUMENT_INIT(secondTag))
+        return WalkResult::advance();
+      // Could check opName but we already have a before/after pair, it can only
+      // be of the same op.
+      // Schedule both instrumentation to be removed as there is nothing between
+      // the start and the stop of the instrumentation.
+      eraseOpList.emplace_back(op);
+      eraseOpList.emplace_back(nextOp);
+      skipNext = true;
+      return WalkResult::advance();
+    });
+    // Remove ops.
+    for (Operation *op : eraseOpList)
+      op->erase();
+  }
+};
+} // namespace onnx_mlir
+
+/*!
+ * Create an instrumentation pass.
+ */
+std::unique_ptr<mlir::Pass> onnx_mlir::createInstrumentCleanupPass() {
+  return std::make_unique<InstrumentCleanupPass>();
+}