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config.log
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config.log
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This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.
It was created by mrbayes configure 3.2, which was
generated by GNU Autoconf 2.69. Invocation command line was
$ ./configure --enable-debug=yes --with-beagle=/home/public/mrbayes/install --prefix=/home/public/mrbayes/install/bin/mb_gdb CC=icc CXX=icpc
## --------- ##
## Platform. ##
## --------- ##
hostname = compute0.ntuhpc.org
uname -m = x86_64
uname -r = 3.10.0-327.36.1.el7.x86_64
uname -s = Linux
uname -v = #1 SMP Sun Sep 18 13:04:29 UTC 2016
/usr/bin/uname -p = x86_64
/bin/uname -X = unknown
/bin/arch = x86_64
/usr/bin/arch -k = unknown
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo = unknown
/bin/machine = unknown
/usr/bin/oslevel = unknown
/bin/universe = unknown
PATH: /opt/intel2018/compilers_and_libraries_2018.0.128/linux/bin/intel64
PATH: /opt/intel2018/compilers_and_libraries_2018.0.128/linux/mpi/intel64/bin
PATH: /opt/apps/software/OpenMPI/1.10.3-GCC-5.4.0-2.26/bin
PATH: /opt/intel2018/compilers_and_libraries_2018.0.128/linux/bin/intel64
PATH: /opt/intel2018/compilers_and_libraries_2018.0.128/linux/mpi/intel64/bin
PATH: /opt/apps/software/hwloc/1.11.3-GCC-5.4.0-2.26/sbin
PATH: /opt/apps/software/hwloc/1.11.3-GCC-5.4.0-2.26/bin
PATH: /opt/apps/software/numactl/2.0.11-GCC-5.4.0-2.26/bin
PATH: /opt/apps/software/binutils/2.26-GCCcore-5.4.0/bin
PATH: /opt/apps/software/GCCcore/5.4.0/bin
PATH: /usr/lib64/qt-3.3/bin
PATH: /usr/local/bin
PATH: /usr/bin
PATH: /usr/local/sbin
PATH: /usr/sbin
PATH: /home/hailin/.local/bin
PATH: /home/hailin/bin
## ----------- ##
## Core tests. ##
## ----------- ##
configure:1961: checking for gcc
configure:1988: result: icc
configure:2217: checking for C compiler version
configure:2226: icc --version >&5
icc (ICC) 18.0.0 20170811
Copyright (C) 1985-2017 Intel Corporation. All rights reserved.
configure:2237: $? = 0
configure:2226: icc -v >&5
icc version 18.0.0 (gcc version 5.4.0 compatibility)
configure:2237: $? = 0
configure:2226: icc -V >&5
Intel(R) C Intel(R) 64 Compiler for applications running on Intel(R) 64, Version 18.0.0.128 Build 20170811
Copyright (C) 1985-2017 Intel Corporation. All rights reserved.
configure:2237: $? = 0
configure:2226: icc -qversion >&5
icc: command line warning #10006: ignoring unknown option '-qversion'
icc: command line error: no files specified; for help type "icc -help"
configure:2237: $? = 1
configure:2257: checking whether the C compiler works
configure:2279: icc -ggdb -Wall conftest.c >&5
configure:2283: $? = 0
configure:2331: result: yes
configure:2334: checking for C compiler default output file name
configure:2336: result: a.out
configure:2342: checking for suffix of executables
configure:2349: icc -o conftest -ggdb -Wall conftest.c >&5
configure:2353: $? = 0
configure:2375: result:
configure:2397: checking whether we are cross compiling
configure:2405: icc -o conftest -ggdb -Wall conftest.c >&5
configure:2409: $? = 0
configure:2416: ./conftest
configure:2420: $? = 0
configure:2435: result: no
configure:2440: checking for suffix of object files
configure:2462: icc -c -ggdb -Wall conftest.c >&5
configure:2466: $? = 0
configure:2487: result: o
configure:2491: checking whether we are using the GNU C compiler
configure:2510: icc -c -ggdb -Wall conftest.c >&5
configure:2510: $? = 0
configure:2519: result: yes
configure:2528: checking whether icc accepts -g
configure:2548: icc -c -g conftest.c >&5
configure:2548: $? = 0
configure:2589: result: yes
configure:2606: checking for icc option to accept ISO C89
configure:2669: icc -c -ggdb -Wall conftest.c >&5
configure:2669: $? = 0
configure:2682: result: none needed
configure:2709: checking how to run the C preprocessor
configure:2740: icc -E conftest.c
configure:2740: $? = 0
configure:2754: icc -E conftest.c
conftest.c(9): error #2379: cannot open source file "ac_nonexistent.h"
#include <ac_nonexistent.h>
^
configure:2754: $? = 2
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "mrbayes"
| #define PACKAGE_TARNAME "mrbayes"
| #define PACKAGE_VERSION "3.2"
| #define PACKAGE_STRING "mrbayes 3.2"
| #define PACKAGE_BUGREPORT "http://www.mrbayes.net"
| #define PACKAGE_URL ""
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:2779: result: icc -E
configure:2799: icc -E conftest.c
configure:2799: $? = 0
configure:2813: icc -E conftest.c
conftest.c(9): error #2379: cannot open source file "ac_nonexistent.h"
#include <ac_nonexistent.h>
^
configure:2813: $? = 2
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "mrbayes"
| #define PACKAGE_TARNAME "mrbayes"
| #define PACKAGE_VERSION "3.2"
| #define PACKAGE_STRING "mrbayes 3.2"
| #define PACKAGE_BUGREPORT "http://www.mrbayes.net"
| #define PACKAGE_URL ""
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:2842: checking for grep that handles long lines and -e
configure:2900: result: /usr/bin/grep
configure:2905: checking for egrep
configure:2967: result: /usr/bin/grep -E
configure:2972: checking for ANSI C header files
configure:2992: icc -c -ggdb -Wall conftest.c >&5
configure:2992: $? = 0
configure:3065: icc -o conftest -ggdb -Wall conftest.c >&5
configure:3065: $? = 0
configure:3065: ./conftest
configure:3065: $? = 0
configure:3076: result: yes
configure:3084: checking for exp in -lm
configure:3109: icc -o conftest -ggdb -Wall conftest.c -lm >&5
configure:3109: $? = 0
configure:3118: result: yes
configure:3172: checking for a BSD-compatible install
configure:3240: result: /usr/bin/install -c
configure:3329: checking for SSE support
configure:3352: icc -o conftest -ggdb -Wall conftest.c -lm >&5
conftest.c(18): warning #266: function "posix_memalign" declared implicitly
res = posix_memalign(&ptr, align, align);
^
configure:3352: $? = 0
configure:3352: ./conftest
configure:3352: $? = 0
configure:3353: result: yes
configure:3398: checking for /home/public/mrbayes/install/include/libhmsbeagle/libhmsbeagle/beagle.h
configure:3412: result: no
configure:3418: checking for /home/public/mrbayes/install/include/libhmsbeagle-1/libhmsbeagle/beagle.h
configure:3432: result: yes
configure:3448: checking for /home/public/mrbayes/install/include/libhmsbeagle/libhmsbeagle/platform.h
configure:3462: result: no
configure:3468: checking for /home/public/mrbayes/install/include/libhmsbeagle-1/libhmsbeagle/platform.h
configure:3482: result: yes
configure:3498: checking for /home/public/mrbayes/install/lib
configure:3512: result: yes
configure:3591: checking for readline in -lreadline
configure:3616: icc -o conftest -ggdb -Wall -I/home/public/mrbayes/install/include/libhmsbeagle-1 -L/home/public/mrbayes/install/lib -lhmsbeagle conftest.c -lreadline -lm >&5
configure:3616: $? = 0
configure:3625: result: yes
configure:3638: checking for rl_completion_matches function
configure:3655: icc -o conftest -ggdb -Wall -I/home/public/mrbayes/install/include/libhmsbeagle-1 -L/home/public/mrbayes/install/lib -lhmsbeagle -lreadline conftest.c -lreadline -lm >&5
configure:3655: $? = 0
configure:3656: result: yes
configure:3668: checking for 32 or 64 bits cpu
configure:3682: icc -o conftest -ggdb -Wall -I/home/public/mrbayes/install/include/libhmsbeagle-1 -L/home/public/mrbayes/install/lib -lhmsbeagle -lreadline conftest.c -lreadline -lm >&5
configure:3682: $? = 0
configure:3682: ./conftest
configure:3682: $? = 0
configure:3683: result: 64
configure:3816: creating ./config.status
## ---------------------- ##
## Running config.status. ##
## ---------------------- ##
This file was extended by mrbayes config.status 3.2, which was
generated by GNU Autoconf 2.69. Invocation command line was
CONFIG_FILES =
CONFIG_HEADERS =
CONFIG_LINKS =
CONFIG_COMMANDS =
$ ./config.status
on compute0.ntuhpc.org
config.status:800: creating Makefile
config.status:800: creating config.h
config.status:975: config.h is unchanged
## ---------------- ##
## Cache variables. ##
## ---------------- ##
ac_cv_c_compiler_gnu=yes
ac_cv_env_CC_set=set
ac_cv_env_CC_value=icc
ac_cv_env_CFLAGS_set=
ac_cv_env_CFLAGS_value=
ac_cv_env_CPPFLAGS_set=
ac_cv_env_CPPFLAGS_value=
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_LDFLAGS_set=
ac_cv_env_LDFLAGS_value=
ac_cv_env_LIBS_set=
ac_cv_env_LIBS_value=
ac_cv_env_build_alias_set=
ac_cv_env_build_alias_value=
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_file__home_public_mrbayes_install_include_libhmsbeagle_1_libhmsbeagle_beagle_h=yes
ac_cv_file__home_public_mrbayes_install_include_libhmsbeagle_1_libhmsbeagle_platform_h=yes
ac_cv_file__home_public_mrbayes_install_include_libhmsbeagle_libhmsbeagle_beagle_h=no
ac_cv_file__home_public_mrbayes_install_include_libhmsbeagle_libhmsbeagle_platform_h=no
ac_cv_file__home_public_mrbayes_install_lib=yes
ac_cv_header_stdc=yes
ac_cv_lib_m_exp=yes
ac_cv_lib_readline_readline=yes
ac_cv_objext=o
ac_cv_path_EGREP='/usr/bin/grep -E'
ac_cv_path_GREP=/usr/bin/grep
ac_cv_path_install='/usr/bin/install -c'
ac_cv_prog_CPP='icc -E'
ac_cv_prog_ac_ct_CC=icc
ac_cv_prog_cc_c89=
ac_cv_prog_cc_g=yes
## ----------------- ##
## Output variables. ##
## ----------------- ##
CC='icc'
CFLAGS='-ggdb -Wall -I/home/public/mrbayes/install/include/libhmsbeagle-1'
CPP='icc -E'
CPPFLAGS=''
DEFS='-DHAVE_CONFIG_H'
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EGREP='/usr/bin/grep -E'
EXEEXT=''
GREP='/usr/bin/grep'
INSTALL_DATA='${INSTALL} -m 644'
INSTALL_PROGRAM='${INSTALL}'
INSTALL_SCRIPT='${INSTALL}'
LDFLAGS=' -L/home/public/mrbayes/install/lib -lhmsbeagle -lreadline'
LIBOBJS=''
LIBS='-lreadline -lm '
LTLIBOBJS=''
OBJEXT='o'
PACKAGE_BUGREPORT='http://www.mrbayes.net'
PACKAGE_NAME='mrbayes'
PACKAGE_STRING='mrbayes 3.2'
PACKAGE_TARNAME='mrbayes'
PACKAGE_URL=''
PACKAGE_VERSION='3.2'
PATH_SEPARATOR=':'
SHELL='/bin/sh'
ac_ct_CC='icc'
bindir='${exec_prefix}/bin'
build_alias=''
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
dvidir='${docdir}'
exec_prefix='${prefix}'
host_alias=''
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${datarootdir}/info'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localedir='${datarootdir}/locale'
localstatedir='${prefix}/var'
mandir='${datarootdir}/man'
mpicc=''
oldincludedir='/usr/include'
pdfdir='${docdir}'
prefix='/home/public/mrbayes/install/bin/mb_gdb'
program_transform_name='s,x,x,'
psdir='${docdir}'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
sysconfdir='${prefix}/etc'
target_alias=''
## ----------- ##
## confdefs.h. ##
## ----------- ##
/* confdefs.h */
#define PACKAGE_NAME "mrbayes"
#define PACKAGE_TARNAME "mrbayes"
#define PACKAGE_VERSION "3.2"
#define PACKAGE_STRING "mrbayes 3.2"
#define PACKAGE_BUGREPORT "http://www.mrbayes.net"
#define PACKAGE_URL ""
#define STDC_HEADERS 1
#define HAVE_LIBM 1
#define SSE_ENABLED 1
#define BEAGLE_ENABLED 1
#define UNIX_VERSION 1
#define HAVE_LIBREADLINE 1
#define COMPLETIONMATCHES 1
#define _64BIT 1
configure: exit 0