diff --git a/packages/app/setup.cfg b/packages/app/setup.cfg
index 94909dcd9039..7bcb6b5df1d4 100644
--- a/packages/app/setup.cfg
+++ b/packages/app/setup.cfg
@@ -14,6 +14,7 @@ classifiers =
     Programming Language :: Python :: 3.10
     Programming Language :: Python :: 3.11
     Programming Language :: Python :: 3.12
+    Programming Language :: Python :: 3.13
     Topic :: Software Development
     Topic :: Software Development :: Code Generators
     Topic :: Software Development :: Testing
@@ -87,4 +88,4 @@ console_scripts =
 [options.packages.find]
 exclude =
     galaxy.tools.bundled*
-    tests*
\ No newline at end of file
+    tests*
diff --git a/packages/auth/setup.cfg b/packages/auth/setup.cfg
index cbd939652a37..5e944fc43075 100644
--- a/packages/auth/setup.cfg
+++ b/packages/auth/setup.cfg
@@ -14,6 +14,7 @@ classifiers =
     Programming Language :: Python :: 3.10
     Programming Language :: Python :: 3.11
     Programming Language :: Python :: 3.12
+    Programming Language :: Python :: 3.13
     Topic :: Software Development
     Topic :: Software Development :: Code Generators
     Topic :: Software Development :: Testing
@@ -39,4 +40,4 @@ python_requires = >=3.8
 
 [options.packages.find]
 exclude =
-    tests*
\ No newline at end of file
+    tests*
diff --git a/packages/config/setup.cfg b/packages/config/setup.cfg
index aaa2465aba5b..8929968614aa 100644
--- a/packages/config/setup.cfg
+++ b/packages/config/setup.cfg
@@ -14,6 +14,7 @@ classifiers =
     Programming Language :: Python :: 3.10
     Programming Language :: Python :: 3.11
     Programming Language :: Python :: 3.12
+    Programming Language :: Python :: 3.13
     Topic :: Software Development
     Topic :: Software Development :: Code Generators
     Topic :: Software Development :: Testing
@@ -46,4 +47,4 @@ console_scripts =
 
 [options.packages.find]
 exclude =
-    tests*
\ No newline at end of file
+    tests*
diff --git a/packages/data/setup.cfg b/packages/data/setup.cfg
index e6406b1d8e05..695902172943 100644
--- a/packages/data/setup.cfg
+++ b/packages/data/setup.cfg
@@ -14,6 +14,7 @@ classifiers =
     Programming Language :: Python :: 3.10
     Programming Language :: Python :: 3.11
     Programming Language :: Python :: 3.12
+    Programming Language :: Python :: 3.13
     Topic :: Software Development
     Topic :: Software Development :: Code Generators
     Topic :: Software Development :: Testing
@@ -74,4 +75,4 @@ console_scripts =
 
 [options.packages.find]
 exclude =
-    tests*
\ No newline at end of file
+    tests*
diff --git a/packages/files/setup.cfg b/packages/files/setup.cfg
index 609a5e9c6079..9c7ff534d99a 100644
--- a/packages/files/setup.cfg
+++ b/packages/files/setup.cfg
@@ -14,6 +14,7 @@ classifiers =
     Programming Language :: Python :: 3.10
     Programming Language :: Python :: 3.11
     Programming Language :: Python :: 3.12
+    Programming Language :: Python :: 3.13
     Topic :: Software Development
     Topic :: Software Development :: Code Generators
     Topic :: Software Development :: Testing
@@ -40,4 +41,4 @@ python_requires = >=3.8
 
 [options.packages.find]
 exclude =
-    tests*
\ No newline at end of file
+    tests*
diff --git a/packages/job_execution/setup.cfg b/packages/job_execution/setup.cfg
index bae606a55115..713679a5bef0 100644
--- a/packages/job_execution/setup.cfg
+++ b/packages/job_execution/setup.cfg
@@ -14,6 +14,7 @@ classifiers =
     Programming Language :: Python :: 3.10
     Programming Language :: Python :: 3.11
     Programming Language :: Python :: 3.12
+    Programming Language :: Python :: 3.13
     Topic :: Software Development
     Topic :: Software Development :: Code Generators
     Topic :: Software Development :: Testing
@@ -49,4 +50,4 @@ console_scripts =
 
 [options.packages.find]
 exclude =
-    tests*
\ No newline at end of file
+    tests*
diff --git a/packages/job_metrics/setup.cfg b/packages/job_metrics/setup.cfg
index bdb1d21eab16..62f9c92e4d3d 100644
--- a/packages/job_metrics/setup.cfg
+++ b/packages/job_metrics/setup.cfg
@@ -15,6 +15,7 @@ classifiers =
     Programming Language :: Python :: 3.10
     Programming Language :: Python :: 3.11
     Programming Language :: Python :: 3.12
+    Programming Language :: Python :: 3.13
     Topic :: Software Development
     Topic :: Software Development :: Code Generators
     Topic :: Software Development :: Testing
@@ -39,4 +40,4 @@ python_requires = >=3.7
 
 [options.packages.find]
 exclude =
-    tests*
\ No newline at end of file
+    tests*
diff --git a/packages/meta/setup.cfg b/packages/meta/setup.cfg
index 2cd672568d9b..5b2ad9d1761b 100644
--- a/packages/meta/setup.cfg
+++ b/packages/meta/setup.cfg
@@ -15,6 +15,7 @@ classifiers =
     Programming Language :: Python :: 3.10
     Programming Language :: Python :: 3.11
     Programming Language :: Python :: 3.12
+    Programming Language :: Python :: 3.13
     Topic :: Scientific/Engineering :: Bio-Informatics
     Topic :: Software Development
     Topic :: Software Development :: Code Generators
diff --git a/packages/navigation/setup.cfg b/packages/navigation/setup.cfg
index e8f37318ff5d..fa75428ff4a5 100644
--- a/packages/navigation/setup.cfg
+++ b/packages/navigation/setup.cfg
@@ -14,6 +14,7 @@ classifiers =
     Programming Language :: Python :: 3.10
     Programming Language :: Python :: 3.11
     Programming Language :: Python :: 3.12
+    Programming Language :: Python :: 3.13
     Topic :: Software Development
     Topic :: Software Development :: Code Generators
     Topic :: Software Development :: Testing
@@ -39,4 +40,4 @@ python_requires = >=3.8
 
 [options.packages.find]
 exclude =
-    tests*
\ No newline at end of file
+    tests*
diff --git a/packages/objectstore/setup.cfg b/packages/objectstore/setup.cfg
index f5b3e08bac4f..4bb721ba608b 100644
--- a/packages/objectstore/setup.cfg
+++ b/packages/objectstore/setup.cfg
@@ -15,6 +15,7 @@ classifiers =
     Programming Language :: Python :: 3.10
     Programming Language :: Python :: 3.11
     Programming Language :: Python :: 3.12
+    Programming Language :: Python :: 3.13
     Topic :: Software Development
     Topic :: Software Development :: Code Generators
     Topic :: Software Development :: Testing
@@ -41,4 +42,4 @@ python_requires = >=3.7
 
 [options.packages.find]
 exclude =
-    tests*
\ No newline at end of file
+    tests*
diff --git a/packages/schema/setup.cfg b/packages/schema/setup.cfg
index 8b63b8091d3d..4d6b3156802c 100644
--- a/packages/schema/setup.cfg
+++ b/packages/schema/setup.cfg
@@ -14,6 +14,7 @@ classifiers =
     Programming Language :: Python :: 3.10
     Programming Language :: Python :: 3.11
     Programming Language :: Python :: 3.12
+    Programming Language :: Python :: 3.13
     Topic :: Software Development
     Topic :: Software Development :: Code Generators
     Topic :: Software Development :: Testing
@@ -39,4 +40,4 @@ python_requires = >=3.8
 
 [options.packages.find]
 exclude =
-    tests*
\ No newline at end of file
+    tests*
diff --git a/packages/selenium/setup.cfg b/packages/selenium/setup.cfg
index 0e52ceff213f..61e1d1f0b0e6 100644
--- a/packages/selenium/setup.cfg
+++ b/packages/selenium/setup.cfg
@@ -14,6 +14,7 @@ classifiers =
     Programming Language :: Python :: 3.10
     Programming Language :: Python :: 3.11
     Programming Language :: Python :: 3.12
+    Programming Language :: Python :: 3.13
     Topic :: Software Development
     Topic :: Software Development :: Code Generators
     Topic :: Software Development :: Testing
@@ -47,4 +48,4 @@ console_scripts =
 
 [options.packages.find]
 exclude =
-    tests*
\ No newline at end of file
+    tests*
diff --git a/packages/test_api/setup.cfg b/packages/test_api/setup.cfg
index dcbc3e33e379..27c05943b642 100644
--- a/packages/test_api/setup.cfg
+++ b/packages/test_api/setup.cfg
@@ -14,6 +14,7 @@ classifiers =
     Programming Language :: Python :: 3.10
     Programming Language :: Python :: 3.11
     Programming Language :: Python :: 3.12
+    Programming Language :: Python :: 3.13
     Topic :: Software Development
     Topic :: Software Development :: Code Generators
     Topic :: Software Development :: Testing
@@ -46,4 +47,4 @@ driver =
 
 [options.packages.find]
 exclude =
-    tests*
\ No newline at end of file
+    tests*
diff --git a/packages/test_base/setup.cfg b/packages/test_base/setup.cfg
index c28481b00e2e..79a7d0bd8aa4 100644
--- a/packages/test_base/setup.cfg
+++ b/packages/test_base/setup.cfg
@@ -14,6 +14,7 @@ classifiers =
     Programming Language :: Python :: 3.10
     Programming Language :: Python :: 3.11
     Programming Language :: Python :: 3.12
+    Programming Language :: Python :: 3.13
     Topic :: Software Development
     Topic :: Software Development :: Code Generators
     Topic :: Software Development :: Testing
@@ -45,4 +46,4 @@ python_requires = >=3.8
 
 [options.packages.find]
 exclude =
-    tests*
\ No newline at end of file
+    tests*
diff --git a/packages/test_driver/setup.cfg b/packages/test_driver/setup.cfg
index b02265f263f0..3794d9583321 100644
--- a/packages/test_driver/setup.cfg
+++ b/packages/test_driver/setup.cfg
@@ -14,6 +14,7 @@ classifiers =
     Programming Language :: Python :: 3.10
     Programming Language :: Python :: 3.11
     Programming Language :: Python :: 3.12
+    Programming Language :: Python :: 3.13
     Topic :: Software Development
     Topic :: Software Development :: Code Generators
     Topic :: Software Development :: Testing
@@ -45,4 +46,4 @@ python_requires = >=3.8
 
 [options.packages.find]
 exclude =
-    tests*
\ No newline at end of file
+    tests*
diff --git a/packages/test_selenium/setup.cfg b/packages/test_selenium/setup.cfg
index 9d6410d5cd29..def14cb2d593 100644
--- a/packages/test_selenium/setup.cfg
+++ b/packages/test_selenium/setup.cfg
@@ -14,6 +14,7 @@ classifiers =
     Programming Language :: Python :: 3.10
     Programming Language :: Python :: 3.11
     Programming Language :: Python :: 3.12
+    Programming Language :: Python :: 3.13
     Topic :: Software Development
     Topic :: Software Development :: Code Generators
     Topic :: Software Development :: Testing
diff --git a/packages/tool_shed/setup.cfg b/packages/tool_shed/setup.cfg
index 005060aaad8f..23109b1138dd 100644
--- a/packages/tool_shed/setup.cfg
+++ b/packages/tool_shed/setup.cfg
@@ -14,6 +14,7 @@ classifiers =
     Programming Language :: Python :: 3.10
     Programming Language :: Python :: 3.11
     Programming Language :: Python :: 3.12
+    Programming Language :: Python :: 3.13
     Topic :: Software Development
     Topic :: Software Development :: Code Generators
     Topic :: Software Development :: Testing
@@ -64,4 +65,4 @@ python_requires = >=3.8
 
 [options.packages.find]
 exclude =
-    tests*
\ No newline at end of file
+    tests*
diff --git a/packages/tool_util/setup.cfg b/packages/tool_util/setup.cfg
index 08d0251b2375..6f14cc5624c6 100644
--- a/packages/tool_util/setup.cfg
+++ b/packages/tool_util/setup.cfg
@@ -15,6 +15,7 @@ classifiers =
     Programming Language :: Python :: 3.10
     Programming Language :: Python :: 3.11
     Programming Language :: Python :: 3.12
+    Programming Language :: Python :: 3.13
     Topic :: Software Development
     Topic :: Software Development :: Code Generators
     Topic :: Software Development :: Testing
@@ -77,4 +78,4 @@ extended-assertions =
 
 [options.packages.find]
 exclude =
-    tests*
\ No newline at end of file
+    tests*
diff --git a/packages/tours/setup.cfg b/packages/tours/setup.cfg
index b80e4d7ef19c..b0509a8abca6 100644
--- a/packages/tours/setup.cfg
+++ b/packages/tours/setup.cfg
@@ -14,6 +14,7 @@ classifiers =
     Programming Language :: Python :: 3.10
     Programming Language :: Python :: 3.11
     Programming Language :: Python :: 3.12
+    Programming Language :: Python :: 3.13
     Topic :: Software Development
     Topic :: Software Development :: Code Generators
     Topic :: Software Development :: Testing
@@ -44,4 +45,4 @@ console_scripts =
 
 [options.packages.find]
 exclude =
-    tests*
\ No newline at end of file
+    tests*
diff --git a/packages/util/setup.cfg b/packages/util/setup.cfg
index dd701b223e2b..00486ccf07bb 100644
--- a/packages/util/setup.cfg
+++ b/packages/util/setup.cfg
@@ -15,6 +15,7 @@ classifiers =
     Programming Language :: Python :: 3.10
     Programming Language :: Python :: 3.11
     Programming Language :: Python :: 3.12
+    Programming Language :: Python :: 3.13
     Topic :: Software Development
     Topic :: Software Development :: Code Generators
     Topic :: Software Development :: Testing
@@ -62,4 +63,4 @@ config_template =
 
 [options.packages.find]
 exclude =
-    tests*
\ No newline at end of file
+    tests*
diff --git a/packages/web_apps/setup.cfg b/packages/web_apps/setup.cfg
index d3d0c49b6552..71b14b09cb3d 100644
--- a/packages/web_apps/setup.cfg
+++ b/packages/web_apps/setup.cfg
@@ -14,6 +14,7 @@ classifiers =
     Programming Language :: Python :: 3.10
     Programming Language :: Python :: 3.11
     Programming Language :: Python :: 3.12
+    Programming Language :: Python :: 3.13
     Topic :: Software Development
     Topic :: Software Development :: Code Generators
     Topic :: Software Development :: Testing
@@ -75,4 +76,4 @@ console_scripts =
 [options.packages.find]
 exclude =
     tests*
-    tool_shed.test*
\ No newline at end of file
+    tool_shed.test*
diff --git a/packages/web_framework/setup.cfg b/packages/web_framework/setup.cfg
index b14df39b13c2..b016260dd631 100644
--- a/packages/web_framework/setup.cfg
+++ b/packages/web_framework/setup.cfg
@@ -14,6 +14,7 @@ classifiers =
     Programming Language :: Python :: 3.10
     Programming Language :: Python :: 3.11
     Programming Language :: Python :: 3.12
+    Programming Language :: Python :: 3.13
     Topic :: Software Development
     Topic :: Software Development :: Code Generators
     Topic :: Software Development :: Testing
@@ -48,4 +49,4 @@ python_requires = >=3.8
 
 [options.packages.find]
 exclude =
-    tests*
\ No newline at end of file
+    tests*
diff --git a/packages/web_stack/setup.cfg b/packages/web_stack/setup.cfg
index eadbc781f02e..9760617d7128 100644
--- a/packages/web_stack/setup.cfg
+++ b/packages/web_stack/setup.cfg
@@ -14,6 +14,7 @@ classifiers =
     Programming Language :: Python :: 3.10
     Programming Language :: Python :: 3.11
     Programming Language :: Python :: 3.12
+    Programming Language :: Python :: 3.13
     Topic :: Software Development
     Topic :: Software Development :: Code Generators
     Topic :: Software Development :: Testing
@@ -40,4 +41,4 @@ python_requires = >=3.8
 
 [options.packages.find]
 exclude =
-    tests*
\ No newline at end of file
+    tests*