You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
As of now, the runLOLA() results table displays columns defined in the index.txt file (e.g tissue, antibody). If the PEP sample annotation sheet doesn't contain those fields, the overlaps and fisher scores can be calculated but the function will crash when writing the results table.
Perhaps we could make this aspect of runLOLA() more flexible so that it accepts any fields the user provides in the PEP sample_annotation.csv file.
As of now, the runLOLA() results table displays columns defined in the index.txt file (e.g tissue, antibody). If the PEP sample annotation sheet doesn't contain those fields, the overlaps and fisher scores can be calculated but the function will crash when writing the results table.
Perhaps we could make this aspect of runLOLA() more flexible so that it accepts any fields the user provides in the PEP sample_annotation.csv file.
LOLA/R/calcLocEnrichment.R
Lines 180 to 185 in 6d5111a
The text was updated successfully, but these errors were encountered: