mkdocs.yml

site_name: Cromwell
site_url: http://www.software.broadinstitute.org/WDL
site_description: Cromwell documentation
site_author: Red Team at Broad Institute

repo_url: https://github.com/broadinstitute/cromwell/tree/develop/docs

pages:
- Introduction: index.md
- Tutorials:
#    - Tutorial Map: tutorials/Overview.md
    - Quick Introduction: tutorials/FiveMinuteIntro.md
    - How to Configure Cromwell: tutorials/ConfigurationFiles.md
    - Getting started with Pipelines API: tutorials/PipelinesApi101.md
    - Getting started with Alibaba Cloud: tutorials/BCSIntro.md
    - View the Timing Diagrams: tutorials/TimingDiagrams.md
    - Persisting data between restarts: tutorials/PersistentServer.md
    - Getting started on HPC Clusters: tutorials/HPCIntro.md
    - Server Mode: tutorials/ServerMode.md
    - Configuring the Local backend: tutorials/LocalBackendIntro.md
    - Viewing Metadata: tutorials/MetadataEndpoint.md
#    - Introduction to Call Caching: tutorials/CallCaching101.md
#    - Common Errors: tutorials/FrequentErrors.md
#    - General Debugging Tips: tutorials/GeneralDebuggingTips.md
- Cromwell Basics:
    - Modes: Modes.md
    - Workflow Language Support: LanguageSupport.md
    - Cromwell Releases: Getting.md
    - Support: GettingHelp.md
- Command Line: CommandLine.md
- Runtime Attributes: RuntimeAttributes.md
- Workflow Options:
  - Overview: wf_options/Overview.md
  - Google Cloud: wf_options/Google.md
- Configuration: Configuring.md
- WOMtool: WOMtool.md
- Labels: Labels.md
- Call Caching: CallCaching.md
- Imports: Imports.md
- Sub-Workflows: SubWorkflows.md
- Execution: execution/ExecutionTwists.md
- Logging: Logging.md
- Backends:
    - Overview: backends/Backends.md
    - Local: backends/Local.md
    - Google Cloud: backends/Google.md
    - Alibaba Cloud: backends/BCS.md
    - GA4GH TES: backends/TES.md
    - Spark: backends/Spark.md
    - HPC: backends/HPC.md
    - Sun GridEngine: backends/SGE.md
    - LSF: backends/LSF.md
    - Slurm: backends/SLURM.md
    - HTCondor: backends/HTcondor.md
- REST API:
    - Overview: api/RESTAPI.md
    - Errors: api/ErrorHandling.md
- For Developers:
    - How to Build: Building.md
    - Instrumentation: Instrumentation.md
    - Integration tests: Centaur.md
    - Security: Security.md
    - Contribute to docs: Contribute.md

theme: readthedocs

extra_css:
    - css/extra.css
extra_javascript:
    - js/extra.js

copyright: Copyright &copy; 2017 <a href="https://broadinstitute.org">Broad Institute</a>
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