diff --git a/R/fits.R b/R/fits.R index a4715ca..c055e1f 100644 --- a/R/fits.R +++ b/R/fits.R @@ -28,37 +28,6 @@ #' } "ribbon_fit" -#' Fitted glmmLDTS Model Object for Ribbon Seals - No Age/Sex -#' -#' A fitted glmmLDTS model object for ribbon seals without inclusion of -#' age or sex covariates in the model formula -#' -#' @format A glmmLDTS object with 21 elements: -#' \describe{ -#' \item{dataset}{data used for model fit} -#' \item{WARNINGS}{} -#' \item{fixed.formula}{class `formula` for fixed effects} -#' \item{random.formula}{class `formula` for random effects} -#' \item{sample.size}{number of records in the data set} -#' \item{timecol}{column that specifies the time vector} -#' \item{trialscol}{} -#' \item{group.vec}{column identifying groups} -#' \item{ridge.reg}{} -#' \item{lambda}{} -#' \item{start.time}{start time for model fit} -#' \item{end.time}{end time for model fit} -#' \item{R.cov.paramaters}{} -#' \item{G.cov.parameters}{} -#' \item{fixed.effects}{fixed effects from the model} -#' \item{random.effects}{random effects from the model} -#' \item{typeIII.hypoth}{} -#' \item{fit.table}{} -#' \item{covb}{} -#' \item{outer.iterations}{} -#' \item{inner.iterations2}{} -#' } -"ribbon_noagesex_fit" - #' Fitted glmmLDTS Model Object for Ribbon Seals - With Year #' #' A fitted glmmLDTS model object for ribbon seals that includes @@ -120,37 +89,6 @@ #' } "spotted_fit" -#' Fitted glmmLDTS Model Object for Spotted Seals - No Age/Sex -#' -#' A fitted glmmLDTS model object for spotted seals without inclusion of -#' age or sex covariates in the model formula -#' -#' @format A glmmLDTS object with 21 elements: -#' \describe{ -#' \item{dataset}{data used for model fit} -#' \item{WARNINGS}{} -#' \item{fixed.formula}{class `formula` for fixed effects} -#' \item{random.formula}{class `formula` for random effects} -#' \item{sample.size}{number of records in the data set} -#' \item{timecol}{column that specifies the time vector} -#' \item{trialscol}{} -#' \item{group.vec}{column identifying groups} -#' \item{ridge.reg}{} -#' \item{lambda}{} -#' \item{start.time}{start time for model fit} -#' \item{end.time}{end time for model fit} -#' \item{R.cov.paramaters}{} -#' \item{G.cov.parameters}{} -#' \item{fixed.effects}{fixed effects from the model} -#' \item{random.effects}{random effects from the model} -#' \item{typeIII.hypoth}{} -#' \item{fit.table}{} -#' \item{covb}{} -#' \item{outer.iterations}{} -#' \item{inner.iterations2}{} -#' } -"spotted_noagesex_fit" - #' Fitted glmmLDTS Model Object for Spotted Seals - With Year #' #' A fitted glmmLDTS model object for spotted seals that includes diff --git a/R/get_data.R b/R/get_data.R index 774ab58..c392c4b 100755 --- a/R/get_data.R +++ b/R/get_data.R @@ -13,7 +13,7 @@ targets::tar_load(c("ribbon_model_data", "spotted_year_fit", "bearded_fit", "bearded_model_data"), - store = "~/_projects/r/berchukHaulout/_targets") + store = "~/_projects/r/berchukseals-haulout/_targets") usethis::use_data(ribbon_model_data, ribbon_fit, diff --git a/data/bearded_fit.rda b/data/bearded_fit.rda index 609c34f..0cb1996 100755 Binary files a/data/bearded_fit.rda and b/data/bearded_fit.rda differ diff --git a/data/bearded_model_data.rda b/data/bearded_model_data.rda index 593f135..e0f0c45 100755 Binary files a/data/bearded_model_data.rda and b/data/bearded_model_data.rda differ diff --git a/data/ribbon_fit.rda b/data/ribbon_fit.rda index d1c1b68..9ed1a53 100755 Binary files a/data/ribbon_fit.rda and b/data/ribbon_fit.rda differ diff --git a/data/ribbon_model_data.rda b/data/ribbon_model_data.rda index 01b90fc..51a7278 100755 Binary files a/data/ribbon_model_data.rda and b/data/ribbon_model_data.rda differ diff --git a/data/ribbon_noagesex_fit.rda b/data/ribbon_noagesex_fit.rda deleted file mode 100755 index dd00000..0000000 Binary files a/data/ribbon_noagesex_fit.rda and /dev/null differ diff --git a/data/ribbon_year_fit.rda b/data/ribbon_year_fit.rda index 33a65ac..dc3760f 100755 Binary files a/data/ribbon_year_fit.rda and b/data/ribbon_year_fit.rda differ diff --git a/data/spotted_fit.rda b/data/spotted_fit.rda index 6610bf8..7fef975 100755 Binary files a/data/spotted_fit.rda and b/data/spotted_fit.rda differ diff --git a/data/spotted_model_data.rda b/data/spotted_model_data.rda index 3decf86..36c0d1d 100755 Binary files a/data/spotted_model_data.rda and b/data/spotted_model_data.rda differ diff --git a/data/spotted_noagesex_fit.rda b/data/spotted_noagesex_fit.rda deleted file mode 100755 index 5d12311..0000000 Binary files a/data/spotted_noagesex_fit.rda and /dev/null differ diff --git a/data/spotted_year_fit.rda b/data/spotted_year_fit.rda index d2fe73c..0a962c0 100755 Binary files a/data/spotted_year_fit.rda and b/data/spotted_year_fit.rda differ