doc/sv-callers_single.svg

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<!-- Title: snakemake_dag Pages: 1 -->
<svg width="583pt" height="358pt"
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<title>snakemake_dag</title>
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<!-- 0 -->
<g id="node1" class="node">
<title>0</title>
<path fill="none" stroke="#56d8d8" stroke-width="2" d="M244.5,-36C244.5,-36 214.5,-36 214.5,-36 208.5,-36 202.5,-30 202.5,-24 202.5,-24 202.5,-12 202.5,-12 202.5,-6 208.5,0 214.5,0 214.5,0 244.5,0 244.5,0 250.5,0 256.5,-6 256.5,-12 256.5,-12 256.5,-24 256.5,-24 256.5,-30 250.5,-36 244.5,-36"/>
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<!-- 1 -->
<g id="node2" class="node">
<title>1</title>
<path fill="none" stroke="#d8ac56" stroke-width="2" d="M264,-108C264,-108 195,-108 195,-108 189,-108 183,-102 183,-96 183,-96 183,-84 183,-84 183,-78 189,-72 195,-72 195,-72 264,-72 264,-72 270,-72 276,-78 276,-84 276,-84 276,-96 276,-96 276,-102 270,-108 264,-108"/>
<text text-anchor="middle" x="229.5" y="-87.5" font-family="sans" font-size="10.00" fill="#000000">survivor_merge</text>
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<!-- 1&#45;&gt;0 -->
<g id="edge1" class="edge">
<title>1&#45;&gt;0</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M229.5,-71.8314C229.5,-64.131 229.5,-54.9743 229.5,-46.4166"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="233.0001,-46.4132 229.5,-36.4133 226.0001,-46.4133 233.0001,-46.4132"/>
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<!-- 2 -->
<g id="node3" class="node">
<title>2</title>
<path fill="none" stroke="#56d8a9" stroke-width="2" d="M89,-185C89,-185 12,-185 12,-185 6,-185 0,-179 0,-173 0,-173 0,-156 0,-156 0,-150 6,-144 12,-144 12,-144 89,-144 89,-144 95,-144 101,-150 101,-156 101,-156 101,-173 101,-173 101,-179 95,-185 89,-185"/>
<text text-anchor="middle" x="50.5" y="-173" font-family="sans" font-size="10.00" fill="#000000">survivor_filter</text>
<text text-anchor="middle" x="50.5" y="-162" font-family="sans" font-size="10.00" fill="#000000">outdir: gridss_out</text>
<text text-anchor="middle" x="50.5" y="-151" font-family="sans" font-size="10.00" fill="#000000">prefix: gridss</text>
</g>
<!-- 2&#45;&gt;1 -->
<g id="edge2" class="edge">
<title>2&#45;&gt;1</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M99.8864,-143.9453C123.7302,-134.0215 152.3632,-122.1044 176.6459,-111.9979"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="178.1773,-115.1517 186.0647,-108.0778 175.4875,-108.6891 178.1773,-115.1517"/>
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<!-- 3 -->
<g id="node4" class="node">
<title>3</title>
<path fill="none" stroke="#56d8a9" stroke-width="2" d="M210,-185C210,-185 131,-185 131,-185 125,-185 119,-179 119,-173 119,-173 119,-156 119,-156 119,-150 125,-144 131,-144 131,-144 210,-144 210,-144 216,-144 222,-150 222,-156 222,-156 222,-173 222,-173 222,-179 216,-185 210,-185"/>
<text text-anchor="middle" x="170.5" y="-173" font-family="sans" font-size="10.00" fill="#000000">survivor_filter</text>
<text text-anchor="middle" x="170.5" y="-162" font-family="sans" font-size="10.00" fill="#000000">outdir: lumpy_out</text>
<text text-anchor="middle" x="170.5" y="-151" font-family="sans" font-size="10.00" fill="#000000">prefix: lumpy</text>
</g>
<!-- 3&#45;&gt;1 -->
<g id="edge3" class="edge">
<title>3&#45;&gt;1</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M186.9348,-143.7476C193.7222,-135.177 201.666,-125.1463 208.841,-116.0864"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="211.6943,-118.121 215.1589,-108.1087 206.2067,-113.7751 211.6943,-118.121"/>
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<!-- 4 -->
<g id="node5" class="node">
<title>4</title>
<path fill="none" stroke="#56d8a9" stroke-width="2" d="M324.5,-185C324.5,-185 252.5,-185 252.5,-185 246.5,-185 240.5,-179 240.5,-173 240.5,-173 240.5,-156 240.5,-156 240.5,-150 246.5,-144 252.5,-144 252.5,-144 324.5,-144 324.5,-144 330.5,-144 336.5,-150 336.5,-156 336.5,-156 336.5,-173 336.5,-173 336.5,-179 330.5,-185 324.5,-185"/>
<text text-anchor="middle" x="288.5" y="-173" font-family="sans" font-size="10.00" fill="#000000">survivor_filter</text>
<text text-anchor="middle" x="288.5" y="-162" font-family="sans" font-size="10.00" fill="#000000">outdir: delly_out</text>
<text text-anchor="middle" x="288.5" y="-151" font-family="sans" font-size="10.00" fill="#000000">prefix: delly</text>
</g>
<!-- 4&#45;&gt;1 -->
<g id="edge4" class="edge">
<title>4&#45;&gt;1</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M272.0652,-143.7476C265.2778,-135.177 257.334,-125.1463 250.159,-116.0864"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="252.7933,-113.7751 243.8411,-108.1087 247.3057,-118.121 252.7933,-113.7751"/>
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<!-- 5 -->
<g id="node6" class="node">
<title>5</title>
<path fill="none" stroke="#56d8a9" stroke-width="2" d="M446.5,-185C446.5,-185 366.5,-185 366.5,-185 360.5,-185 354.5,-179 354.5,-173 354.5,-173 354.5,-156 354.5,-156 354.5,-150 360.5,-144 366.5,-144 366.5,-144 446.5,-144 446.5,-144 452.5,-144 458.5,-150 458.5,-156 458.5,-156 458.5,-173 458.5,-173 458.5,-179 452.5,-185 446.5,-185"/>
<text text-anchor="middle" x="406.5" y="-173" font-family="sans" font-size="10.00" fill="#000000">survivor_filter</text>
<text text-anchor="middle" x="406.5" y="-162" font-family="sans" font-size="10.00" fill="#000000">outdir: manta_out</text>
<text text-anchor="middle" x="406.5" y="-151" font-family="sans" font-size="10.00" fill="#000000">prefix: manta</text>
</g>
<!-- 5&#45;&gt;1 -->
<g id="edge5" class="edge">
<title>5&#45;&gt;1</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M357.6654,-143.9453C334.0881,-134.0215 305.775,-122.1044 281.7635,-111.9979"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="283.0247,-108.7314 272.45,-108.0778 280.309,-115.1832 283.0247,-108.7314"/>
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<!-- 6 -->
<g id="node7" class="node">
<title>6</title>
<path fill="none" stroke="#56d882" stroke-width="2" d="M88.5,-262C88.5,-262 12.5,-262 12.5,-262 6.5,-262 .5,-256 .5,-250 .5,-250 .5,-233 .5,-233 .5,-227 6.5,-221 12.5,-221 12.5,-221 88.5,-221 88.5,-221 94.5,-221 100.5,-227 100.5,-233 100.5,-233 100.5,-250 100.5,-250 100.5,-256 94.5,-262 88.5,-262"/>
<text text-anchor="middle" x="50.5" y="-250" font-family="sans" font-size="10.00" fill="#000000">gridss_s</text>
<text text-anchor="middle" x="50.5" y="-239" font-family="sans" font-size="10.00" fill="#000000">path: data/bam/3</text>
<text text-anchor="middle" x="50.5" y="-228" font-family="sans" font-size="10.00" fill="#000000">sample: T3</text>
</g>
<!-- 6&#45;&gt;2 -->
<g id="edge6" class="edge">
<title>6&#45;&gt;2</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M50.5,-220.8654C50.5,-213.0111 50.5,-203.8822 50.5,-195.2879"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="54.0001,-195.1915 50.5,-185.1915 47.0001,-195.1916 54.0001,-195.1915"/>
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<!-- 7 -->
<g id="node8" class="node">
<title>7</title>
<path fill="none" stroke="#afd856" stroke-width="2" d="M208.5,-262C208.5,-262 132.5,-262 132.5,-262 126.5,-262 120.5,-256 120.5,-250 120.5,-250 120.5,-233 120.5,-233 120.5,-227 126.5,-221 132.5,-221 132.5,-221 208.5,-221 208.5,-221 214.5,-221 220.5,-227 220.5,-233 220.5,-233 220.5,-250 220.5,-250 220.5,-256 214.5,-262 208.5,-262"/>
<text text-anchor="middle" x="170.5" y="-250" font-family="sans" font-size="10.00" fill="#000000">lumpy_s</text>
<text text-anchor="middle" x="170.5" y="-239" font-family="sans" font-size="10.00" fill="#000000">path: data/bam/3</text>
<text text-anchor="middle" x="170.5" y="-228" font-family="sans" font-size="10.00" fill="#000000">sample: T3</text>
</g>
<!-- 7&#45;&gt;3 -->
<g id="edge7" class="edge">
<title>7&#45;&gt;3</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M170.5,-220.8654C170.5,-213.0111 170.5,-203.8822 170.5,-195.2879"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="174.0001,-195.1915 170.5,-185.1915 167.0001,-195.1916 174.0001,-195.1915"/>
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<!-- 8 -->
<g id="node9" class="node">
<title>8</title>
<path fill="none" stroke="#d6d856" stroke-width="2" d="M315,-259.5C315,-259.5 262,-259.5 262,-259.5 256,-259.5 250,-253.5 250,-247.5 250,-247.5 250,-235.5 250,-235.5 250,-229.5 256,-223.5 262,-223.5 262,-223.5 315,-223.5 315,-223.5 321,-223.5 327,-229.5 327,-235.5 327,-235.5 327,-247.5 327,-247.5 327,-253.5 321,-259.5 315,-259.5"/>
<text text-anchor="middle" x="288.5" y="-239" font-family="sans" font-size="10.00" fill="#000000">delly_merge</text>
</g>
<!-- 8&#45;&gt;4 -->
<g id="edge8" class="edge">
<title>8&#45;&gt;4</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M288.5,-223.2521C288.5,-214.9156 288.5,-204.808 288.5,-195.3438"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="292.0001,-195.0603 288.5,-185.0603 285.0001,-195.0603 292.0001,-195.0603"/>
</g>
<!-- 9 -->
<g id="node10" class="node">
<title>9</title>
<path fill="none" stroke="#d85656" stroke-width="2" d="M444.5,-262C444.5,-262 368.5,-262 368.5,-262 362.5,-262 356.5,-256 356.5,-250 356.5,-250 356.5,-233 356.5,-233 356.5,-227 362.5,-221 368.5,-221 368.5,-221 444.5,-221 444.5,-221 450.5,-221 456.5,-227 456.5,-233 456.5,-233 456.5,-250 456.5,-250 456.5,-256 450.5,-262 444.5,-262"/>
<text text-anchor="middle" x="406.5" y="-250" font-family="sans" font-size="10.00" fill="#000000">manta_s</text>
<text text-anchor="middle" x="406.5" y="-239" font-family="sans" font-size="10.00" fill="#000000">path: data/bam/3</text>
<text text-anchor="middle" x="406.5" y="-228" font-family="sans" font-size="10.00" fill="#000000">sample: T3</text>
</g>
<!-- 9&#45;&gt;5 -->
<g id="edge9" class="edge">
<title>9&#45;&gt;5</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M406.5,-220.8654C406.5,-213.0111 406.5,-203.8822 406.5,-195.2879"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="410.0001,-195.1915 406.5,-185.1915 403.0001,-195.1916 410.0001,-195.1915"/>
</g>
<!-- 10 -->
<g id="node11" class="node">
<title>10</title>
<path fill="none" stroke="#d88556" stroke-width="2" d="M90.5,-350C90.5,-350 14.5,-350 14.5,-350 8.5,-350 2.5,-344 2.5,-338 2.5,-338 2.5,-310 2.5,-310 2.5,-304 8.5,-298 14.5,-298 14.5,-298 90.5,-298 90.5,-298 96.5,-298 102.5,-304 102.5,-310 102.5,-310 102.5,-338 102.5,-338 102.5,-344 96.5,-350 90.5,-350"/>
<text text-anchor="middle" x="52.5" y="-338" font-family="sans" font-size="10.00" fill="#000000">delly_s</text>
<text text-anchor="middle" x="52.5" y="-327" font-family="sans" font-size="10.00" fill="#000000">path: data/bam/3</text>
<text text-anchor="middle" x="52.5" y="-316" font-family="sans" font-size="10.00" fill="#000000">sample: T3</text>
<text text-anchor="middle" x="52.5" y="-305" font-family="sans" font-size="10.00" fill="#000000">sv_type: INV</text>
</g>
<!-- 10&#45;&gt;8 -->
<g id="edge10" class="edge">
<title>10&#45;&gt;8</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M102.5453,-301.4616C105.5607,-300.2547 108.5619,-299.0912 111.5,-298 162.9006,-278.9107 177.3715,-279.0011 229.5,-262 233.0052,-260.8568 236.62,-259.6557 240.2535,-258.4322"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="241.5135,-261.7006 249.8528,-255.1656 239.2584,-255.0738 241.5135,-261.7006"/>
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<!-- 11 -->
<g id="node12" class="node">
<title>11</title>
<path fill="none" stroke="#d88556" stroke-width="2" d="M208.5,-350C208.5,-350 132.5,-350 132.5,-350 126.5,-350 120.5,-344 120.5,-338 120.5,-338 120.5,-310 120.5,-310 120.5,-304 126.5,-298 132.5,-298 132.5,-298 208.5,-298 208.5,-298 214.5,-298 220.5,-304 220.5,-310 220.5,-310 220.5,-338 220.5,-338 220.5,-344 214.5,-350 208.5,-350"/>
<text text-anchor="middle" x="170.5" y="-338" font-family="sans" font-size="10.00" fill="#000000">delly_s</text>
<text text-anchor="middle" x="170.5" y="-327" font-family="sans" font-size="10.00" fill="#000000">path: data/bam/3</text>
<text text-anchor="middle" x="170.5" y="-316" font-family="sans" font-size="10.00" fill="#000000">sample: T3</text>
<text text-anchor="middle" x="170.5" y="-305" font-family="sans" font-size="10.00" fill="#000000">sv_type: INS</text>
</g>
<!-- 11&#45;&gt;8 -->
<g id="edge11" class="edge">
<title>11&#45;&gt;8</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M207.8359,-297.8965C222.7368,-287.4785 239.7785,-275.5637 254.3472,-265.378"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="256.4143,-268.2034 262.6044,-259.605 252.4033,-262.4665 256.4143,-268.2034"/>
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<!-- 12 -->
<g id="node13" class="node">
<title>12</title>
<path fill="none" stroke="#d88556" stroke-width="2" d="M326.5,-350C326.5,-350 250.5,-350 250.5,-350 244.5,-350 238.5,-344 238.5,-338 238.5,-338 238.5,-310 238.5,-310 238.5,-304 244.5,-298 250.5,-298 250.5,-298 326.5,-298 326.5,-298 332.5,-298 338.5,-304 338.5,-310 338.5,-310 338.5,-338 338.5,-338 338.5,-344 332.5,-350 326.5,-350"/>
<text text-anchor="middle" x="288.5" y="-338" font-family="sans" font-size="10.00" fill="#000000">delly_s</text>
<text text-anchor="middle" x="288.5" y="-327" font-family="sans" font-size="10.00" fill="#000000">path: data/bam/3</text>
<text text-anchor="middle" x="288.5" y="-316" font-family="sans" font-size="10.00" fill="#000000">sample: T3</text>
<text text-anchor="middle" x="288.5" y="-305" font-family="sans" font-size="10.00" fill="#000000">sv_type: DUP</text>
</g>
<!-- 12&#45;&gt;8 -->
<g id="edge12" class="edge">
<title>12&#45;&gt;8</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M288.5,-297.8965C288.5,-288.939 288.5,-278.8749 288.5,-269.7548"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="292.0001,-269.6049 288.5,-259.605 285.0001,-269.605 292.0001,-269.6049"/>
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<!-- 13 -->
<g id="node14" class="node">
<title>13</title>
<path fill="none" stroke="#d88556" stroke-width="2" d="M444.5,-350C444.5,-350 368.5,-350 368.5,-350 362.5,-350 356.5,-344 356.5,-338 356.5,-338 356.5,-310 356.5,-310 356.5,-304 362.5,-298 368.5,-298 368.5,-298 444.5,-298 444.5,-298 450.5,-298 456.5,-304 456.5,-310 456.5,-310 456.5,-338 456.5,-338 456.5,-344 450.5,-350 444.5,-350"/>
<text text-anchor="middle" x="406.5" y="-338" font-family="sans" font-size="10.00" fill="#000000">delly_s</text>
<text text-anchor="middle" x="406.5" y="-327" font-family="sans" font-size="10.00" fill="#000000">path: data/bam/3</text>
<text text-anchor="middle" x="406.5" y="-316" font-family="sans" font-size="10.00" fill="#000000">sample: T3</text>
<text text-anchor="middle" x="406.5" y="-305" font-family="sans" font-size="10.00" fill="#000000">sv_type: DEL</text>
</g>
<!-- 13&#45;&gt;8 -->
<g id="edge13" class="edge">
<title>13&#45;&gt;8</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M369.1641,-297.8965C354.2632,-287.4785 337.2215,-275.5637 322.6528,-265.378"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="324.5967,-262.4665 314.3956,-259.605 320.5857,-268.2034 324.5967,-262.4665"/>
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<!-- 14 -->
<g id="node15" class="node">
<title>14</title>
<path fill="none" stroke="#d88556" stroke-width="2" d="M562.5,-350C562.5,-350 486.5,-350 486.5,-350 480.5,-350 474.5,-344 474.5,-338 474.5,-338 474.5,-310 474.5,-310 474.5,-304 480.5,-298 486.5,-298 486.5,-298 562.5,-298 562.5,-298 568.5,-298 574.5,-304 574.5,-310 574.5,-310 574.5,-338 574.5,-338 574.5,-344 568.5,-350 562.5,-350"/>
<text text-anchor="middle" x="524.5" y="-338" font-family="sans" font-size="10.00" fill="#000000">delly_s</text>
<text text-anchor="middle" x="524.5" y="-327" font-family="sans" font-size="10.00" fill="#000000">path: data/bam/3</text>
<text text-anchor="middle" x="524.5" y="-316" font-family="sans" font-size="10.00" fill="#000000">sample: T3</text>
<text text-anchor="middle" x="524.5" y="-305" font-family="sans" font-size="10.00" fill="#000000">sv_type: BND</text>
</g>
<!-- 14&#45;&gt;8 -->
<g id="edge14" class="edge">
<title>14&#45;&gt;8</title>
<path fill="none" stroke="#c0c0c0" stroke-width="2" d="M474.4547,-301.4616C471.4393,-300.2547 468.4381,-299.0912 465.5,-298 414.0994,-278.9107 399.6285,-279.0011 347.5,-262 343.9948,-260.8568 340.38,-259.6557 336.7465,-258.4322"/>
<polygon fill="#c0c0c0" stroke="#c0c0c0" stroke-width="2" points="337.7416,-255.0738 327.1472,-255.1656 335.4865,-261.7006 337.7416,-255.0738"/>
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