fixed up deploy ci-cd

.github/workflows/ci-cd.yml

@@ -351,6 +351,12 @@ jobs:
     needs: [devcheck, test, deploy-fileformats, deploy-fileformats-extras]
     runs-on: ubuntu-latest
     steps:
+
+    - name: Set up Git user
+      run: |
+        git config --local user.email "[email protected]"
+        git config --local user.name "GitHub Action"
+
     - name: Download version file
       uses: actions/download-artifact@v2
       with:
@@ -372,6 +378,25 @@ jobs:
       run: |
         sed -i '/\/pydra\/tasks\/mrtrix3\/${{ env.SUBPKG_NAME }}/d' .gitignore
 
+    - name: Add auto-generated directory to git repo
+      if: github.event_name == 'release' || github.event_name == 'repository_dispatch'
+      run: |
+        git add pydra/tasks/mrtrix3/$SUBPKG_NAME
+        git commit -am"added auto-generated version to make new tag for package version"
+        git status
+
+    - name: Get latest version tag
+      id: latest_tag
+      run: |
+        git fetch --tags
+        echo "TAG=$(git tag -l | grep 'v.*' | tail -n 1 | awk -F post '{print $1}')" >> $GITHUB_OUTPUT
+
+    - name: Overwrite the tag of release event with latest commit (i.e. including the auto directory)
+      if: github.event_name == 'release'
+      run: |
+        git tag -d ${{ steps.latest_tag.outputs.TAG }};
+        git tag -a ${{ steps.latest_tag.outputs.TAG }} -m"Tag used to create a pydra-mrtrix3 $MRTRIX_VERSION release";
+
     - name: Set up Python 3.11
       uses: actions/setup-python@v2
       with: