diff --git a/mriqc/data/testdata/group_T1w.tsv b/mriqc/data/testdata/group_T1w.tsv index 12d7ae13..48ffc785 100644 --- a/mriqc/data/testdata/group_T1w.tsv +++ b/mriqc/data/testdata/group_T1w.tsv @@ -1,5 +1,5 @@ bids_name cjv cnr efc fber fwhm_avg fwhm_x fwhm_y fwhm_z icvs_csf icvs_gm icvs_wm inu_med inu_range qi_1 qi_2 rpve_csf rpve_gm rpve_wm size_x size_y size_z snr_csf snr_gm snr_total snr_wm snrd_csf snrd_gm snrd_total snrd_wm spacing_x spacing_y spacing_z summary_bg_k summary_bg_mad summary_bg_mean summary_bg_median summary_bg_n summary_bg_p05 summary_bg_p95 summary_bg_stdv summary_csf_k summary_csf_mad summary_csf_mean summary_csf_median summary_csf_n summary_csf_p05 summary_csf_p95 summary_csf_stdv summary_gm_k summary_gm_mad summary_gm_mean summary_gm_median summary_gm_n summary_gm_p05 summary_gm_p95 summary_gm_stdv summary_wm_k summary_wm_mad summary_wm_mean summary_wm_median summary_wm_n summary_wm_p05 summary_wm_p95 summary_wm_stdv tpm_overlap_csf tpm_overlap_gm tpm_overlap_wm wm2max -sub-50137_T1w 0.5946364030347385 1.6705988220313406 0.6960134252231684 7632.404958677686 4.202703333333333 4.04437 4.57298 3.99076 0.2607070742917811 0.38396092314479024 0.3553320025634285 0.6877774000167847 0.38117922544479355 0.0 0.002295668304182044 5.081432626162044 4.991782430776381 5.114091002400782 208 256 176 2.2951325004992604 4.936353477427729 5.434675057986866 9.07253919603361 10.199045584302324 14.572319191529168 15.232386344514095 20.925794257710795 1.0 1.0 1.0 338.4370104980457 0.0 7.295875806489531 0.0 2905640.0 0.0 43.55016700923443 29.428849400342717 1.903743377653055 147.99168233119116 442.87693678889445 458.14303178340197 468168.6393911941 108.32414958626032 741.2191173434258 199.61485552173647 -0.43557073499837085 93.58211707175519 663.6434283040721 654.591298699379 689503.5873361042 459.91496443748474 911.4427809789777 132.60614885246827 2.0117351281983806 76.12668787371726 923.2319039154182 939.9905848503113 638092.7737545212 724.9960894882679 1062.2933142632246 103.60824329073633 0.2406811374858812 0.5351042169358428 0.549711129303519 0.405317758120108 -sub-50152_T1w 0.5389448521321344 1.951832110632953 0.6407575000929345 6400.0 3.538223004967018 3.5068090149010525 3.72369 3.38417 0.24581070515371412 0.39994911569375136 0.3542401791525344 0.6055886149406433 0.29949661493301377 0.0 0.007373185025089607 5.3317928277705136 5.260562667625682 5.373010998628089 160 239 200 2.859771605234868 7.654488968704144 6.401109684774777 8.68906848038532 25.078592655941325 31.375238888142178 33.547277021352265 44.18799951997329 1.100000023841858 1.0 1.0 6.414540030448748 0.0 7.886303632707387 0.0 2096437.0 0.0 38.88384077697992 14.240638115831892 0.04184774685015302 176.6526273457668 525.277949354461 545.1310024410486 343748.8186203772 191.50386236608028 807.6631854474545 190.62019096981507 -0.5752850710339215 70.2793420517636 686.4136575956873 682.0006075128913 559300.441947877 546.0775418952107 840.110557936132 89.09804437765503 -0.3790885336436278 79.82206421534173 933.7240992117161 960.5103765055537 495379.73952520755 712.4791779369116 1076.101774647832 110.5422761029612 0.24458913017627987 0.5240078354587275 0.534175557705883 0.47523509797309954 -sub-50785_T1w 0.7462348936737846 1.3384000692729365 0.7530480076783985 -1.0 3.499472057939973 3.46213 3.7065461738199192 3.32974 0.26652116229801986 0.3772997886870599 0.35617904901492026 0.9645677804946899 0.27349820435047145 0.0 0.0009944221999575347 7.277619985914051 7.159163031906821 7.30470686003244 256 180 256 2.3315218639714548 3.6975246632030516 3.8881798392340765 5.635492990527722 6.229615920210668 8.968627139000166 9.61189448660999 13.637440400619134 1.0 0.9999875426292419 1.0 579.384989482046 0.0 2.7983003899529795 0.0 5091436.0 0.0 0.0 41.35426782549021 0.42896562817136985 119.23098496445634 386.216226576264 393.23292861506343 422567.70370231196 97.09253230690956 657.3769222311676 168.65913607823262 -0.21950911347902347 105.7205633958213 571.9650741568756 566.1279219612479 598206.5511727771 329.8122172765434 835.4616258479655 153.109850600149 0.8381371141597027 114.20244240752042 846.6359659267068 860.8380831554532 564719.74514658 578.6322632431984 1077.089632384479 152.75279774464403 0.24122428647139732 0.5360100491712251 0.5573704873348334 0.34931847577355485 -sub-51187_T1w 0.7051518353945694 1.215726053025216 0.6068733970705135 4668.127902703064 3.5394978356516567 4.25443345257453 2.965211919410108 3.398848134970332 0.2607189196731251 0.3850319288883145 0.35424915143856045 0.8645452558994293 0.659174335002899 0.0 0.002621822353053779 6.231531509930732 6.101578640123206 6.23860156813424 256 132 256 1.9068147296421873 3.490092089821521 3.4894459153244077 5.071430926509515 5.401224044545881 7.612318350917183 8.178972191748775 11.523374179783266 0.8593999743461609 1.5000007152557373 0.8593999743461609 643.420315158402 0.0 12.502871617173104 0.0 2453296.0 0.0 63.80114300921559 49.546339902331766 17.383575114497404 203.01221375156962 394.8127140206175 408.4811688065529 352493.0222813282 37.886436089873314 722.4866435565054 214.2214359050029 19.093366757493296 103.00303682268894 585.9201437803881 575.7007433250546 520564.7079959175 332.4198212251067 879.8980544172227 164.95272203442693 10.128701373968426 105.56920244595317 841.1839217378181 871.4841885343194 478946.2697518447 541.1317743547261 1057.166188761592 171.84169347257236 0.23964798460924375 0.5492138840500247 0.5613043528545612 0.3146424394881272 +sub-50137_T1w 0.5954143604542232 1.6638579105552882 0.696013425223169 7632.404958677687 4.202703333333333 4.04437 4.57298 3.99076 0.26024785652744636 0.38408797703315845 0.35566416643939525 0.6877774000167847 0.38117922544479355 0.0 0.002295668304182044 5.081276724413724 4.990756260234296 5.113134802367116 208 256 176 2.2937107725306363 4.917917779273032 5.414127031616626 9.030752543046212 10.197292417890393 14.569689441911478 15.229464400494718 20.921411341682283 1.0 1.0 1.0 338.43701049804054 0.0 7.293577983070605 0.0 2905640.0 0.0 43.53645095974207 29.419580835323824 1.8447784153324047 148.1785165093192 442.67347918309935 457.92001267150044 467343.9921919382 108.17194144427776 741.1431271880865 199.64135332045623 -0.35434565463924894 93.55264354645082 663.4221231418237 654.2670446671546 689731.7462465676 459.0615651831031 912.2579122893512 133.037313704897 2.017341484779524 76.27779483169759 922.4739051832804 939.4977170489728 638689.2620031061 723.2325619198382 1061.9193829484284 104.03307776196522 0.24142527697392707 0.5351267249526063 0.5492788818473785 0.4052328641526733 +sub-50152_T1w 0.539219705574777 1.9474863519286423 0.6407575000929341 6400.0 3.538223004967018 3.5068090149010525 3.72369 3.38417 0.24603987215843207 0.3997439898531474 0.3542161379884206 0.6055886149406433 0.29949661493301377 0.0 0.007373185025089607 5.331492928503499 5.259937594008643 5.372550867202498 160 239 200 2.8606218342450362 7.6336456345923995 6.389366594664442 8.673832315155893 25.101236197040226 31.375238888160823 33.55424426478266 44.186257709146936 1.100000023841858 1.0 1.0 6.414540030448752 0.0 7.885408184004529 0.0 2096437.0 0.0 38.87942571938038 14.239021165535616 0.04906040355413355 177.41835136541522 525.5333175241614 545.5612502843142 344069.29238630924 191.59568993747234 808.0636241286993 190.7139388176008 -0.5716823144664929 70.32748948461413 686.3957146724873 681.9231698960066 559013.587992302 545.7505366802216 840.583026945591 89.3311783915161 -0.37782611205030214 79.81300083569138 933.452586370995 960.363458275795 495346.1196362858 711.8304204493761 1075.9795888960361 110.71951289754341 0.24415403242557018 0.5240272610492305 0.5342199967075586 0.4752163650668765 +sub-50785_T1w 0.7461341169008633 1.3397828655659076 0.7530480076783983 -1.0 3.499472057939973 3.46213 3.7065461738199192 3.32974 0.2670508857178007 0.3771657734932426 0.35578334078895674 0.9645677804946899 0.27349820435047145 0.0 0.0008989212653515643 7.277978198643724 7.159746223301595 7.305039410577692 256 180 256 2.3324453804558374 3.7071785736699265 3.8942598735683753 5.643155666579362 6.224456192836066 8.970749163248403 9.610299796084766 13.63569403216983 1.0 0.9999875426292419 1.0 579.4582204165845 0.0 2.7989928403802895 0.0 5080237.0 0.0 0.0 41.37895519541185 0.4214879703475489 118.70755566859489 386.1200298164586 393.141785312444 423407.57698828075 97.19213696569204 657.170887414366 168.55328075295242 -0.22318958644717712 105.67941658296553 572.463234916038 566.5999136902392 597994.0708619782 330.8538051880896 835.5335811562836 152.83845347074578 0.8425022802147404 114.1628559875614 847.082864043662 861.2416779398918 564092.3521048883 579.310912258923 1077.3695249855518 152.6168983168376 0.24019729935470005 0.5355084318272595 0.5571234404197298 0.3494179683613571 +sub-51187_T1w 0.6999440574229334 1.229109740105771 0.6068733970705132 4668.127902703063 3.5394978356516567 4.25443345257453 2.965211919410108 3.398848134970332 0.2632767380846025 0.38411410306597654 0.352609158849421 0.8645452558994293 0.659174335002899 0.0 0.002621822353053779 6.232708393405123 6.104914216952696 6.241270182398587 256 132 256 1.9045372860088077 3.542878319529499 3.517728319831832 5.105769353957191 5.3904165105611055 7.623761622201767 8.185965301979987 11.543717773177091 0.8593999743461609 1.5000007152557373 0.8593999743461609 643.4203151583965 0.0 12.526359964354464 0.0 2453296.0 0.0 63.92100214585662 49.63941944985638 19.631055549488405 198.10879423073186 395.1546922405064 408.42967384681106 355951.2030053217 38.246628262102604 723.3140679895878 214.45056661846712 18.305382974842022 102.98229317978202 587.9801981000472 577.6493276059628 519323.80381326505 337.8612728342414 879.2389240153134 163.04504963273772 10.92217792214386 104.91053306594992 844.5959841770807 874.6628160998225 476728.99321174936 544.9421983994544 1059.6339149996638 171.30854100624651 0.23533804206716807 0.5463730577598676 0.5594191519575634 0.31519791549296117 diff --git a/mriqc/data/testdata/group_bold.tsv b/mriqc/data/testdata/group_bold.tsv index fc2cf556..779bba82 100644 --- a/mriqc/data/testdata/group_bold.tsv +++ b/mriqc/data/testdata/group_bold.tsv @@ -1,10 +1,10 @@ bids_name aor aqi dummy_trs dvars_nstd dvars_std dvars_vstd efc fber fd_mean fd_num fd_perc fwhm_avg fwhm_x fwhm_y fwhm_z gcor gsr_x gsr_y size_t size_x size_y size_z snr spacing_tr spacing_x spacing_y spacing_z summary_bg_k summary_bg_mad summary_bg_mean summary_bg_median summary_bg_n summary_bg_p05 summary_bg_p95 summary_bg_stdv summary_fg_k summary_fg_mad summary_fg_mean summary_fg_median summary_fg_n summary_fg_p05 summary_fg_p95 summary_fg_stdv tsnr -sub-ds205s03_task-functionallocalizer_run-01_bold 0.006095243902439024 0.007823488658536586 0 23.966727903703706 1.102518836790124 1.047273010617284 0.5579069493751738 899.6697998046875 0.2597328437876592 32 39.02439024390244 2.0442025000000004 1.9266575 2.202515 2.003435 0.0594459 -0.008919048123061657 0.046995360404253006 82 53 53 27 5.6948284240800655 2.200000047683716 4.0 4.0 4.0 55.254797636311686 6.064519153511216 40.2425651550293 25.500967025756836 39937.0 20.3428337097168 111.04628906249957 43.764488220214844 0.7591576119621788 119.28007210156657 786.5039672851562 773.080322265625 15733.0 585.5270751953125 1033.836279296875 135.74697875976562 56.231929779052734 -sub-ds205s03_task-view_run-01_bold 0.00411054347826087 0.01068276597826087 0 21.092004629450546 1.0202863625274727 0.9745369740659348 0.5552946674315924 952.6166381835938 0.15442131741087842 19 20.652173913043477 2.0053708333333335 1.8555225 2.1805075 1.9800825 0.0195418 -0.008034070022404194 0.0430377796292305 92 53 53 27 5.93805376434488 2.200000047683716 4.0 4.0 4.0 35.51782248196652 5.925238169835897 39.056602478027344 25.351051330566406 39976.0 20.27671766281128 104.57568550109863 39.99586486816406 0.9211367125189063 115.67233732687842 804.1162719726562 790.407958984375 15714.0 608.2477935791015 1047.066583251953 133.1046905517578 57.2978401184082 -sub-ds205s03_task-view_run-02_bold 0.0005159782608695653 0.007200051847826087 0 23.21337720857143 0.9681636756043958 0.9040404636263731 0.556983630923754 906.8717041015625 0.22583492160087285 42 45.65217391304348 2.0369425 1.907255 2.205195 1.9983775 0.35028 -0.008734038099646568 0.04551831632852554 92 53 53 27 5.75149117241631 2.200000047683716 4.0 4.0 4.0 38.24923786762323 5.946278708255221 39.73728942871094 25.505823135375977 39963.0 20.4355749130249 108.92361755371097 41.487548828125 0.7994344343708901 118.22503918740904 790.826171875 777.7192993164062 15698.0 590.9079803466797 1035.856182861328 135.21615600585938 44.29453659057617 -sub-ds205s07_task-functionallocalizer_run-01_bold 0.006220972222222222 0.005955416527777778 0 22.164407112253535 1.1369681102816902 1.0329233587323943 0.5408144337052169 970.5060424804688 0.14577883191242744 9 12.5 1.7997466666666668 1.7000275 1.8896125 1.8096 0.0363208 -0.007229922339320183 0.030121684074401855 72 53 53 27 6.154746101336395 2.200000047683716 4.0 4.0 4.0 72.92134463782234 5.4782062614059654 34.31175994873047 23.172990798950195 41366.0 18.41270160675049 85.25933074951172 39.402488708496094 0.018393176427215607 120.66213897676408 733.7848510742188 722.3616333007812 14901.0 561.9546508789062 934.550048828125 117.36266326904297 69.18749237060547 -sub-ds205s07_task-view_run-01_bold 0.003608260869565217 0.009175292500000001 0 21.84835192934066 1.0427140262637362 0.9666966985714288 0.5380359575962149 985.0971069335938 0.14558148990580363 13 14.130434782608695 1.80711 1.709975 1.8861225 1.8252325 0.0417755 -0.005822373554110527 0.029466470703482628 92 53 53 27 6.168694522462967 2.200000047683716 4.0 4.0 4.0 95.14145455451593 5.3067685029661344 33.172428131103516 22.909273147583008 41437.0 18.263794708251954 78.87188262939443 37.56155776977539 0.016710679619444946 121.23232187341958 731.7140502929688 721.394775390625 14884.0 558.7851348876953 932.1101501464842 116.9405517578125 57.9542350769043 -sub-ds205s07_task-view_run-02_bold 0.0016336956521739133 0.008949501086956522 0 21.54908259912088 1.0357590817582416 0.9600328116483516 0.5395614093827825 976.3135986328125 0.15032443036521725 17 18.47826086956522 1.81409 1.71165 1.9103875 1.8202325 0.0443414 -0.006481321528553963 0.031173575669527054 92 53 53 27 6.142196985516922 2.200000047683716 4.0 4.0 4.0 100.14952914320926 5.535078351778958 34.128631591796875 23.13825225830078 41380.0 18.192825603485108 83.84297828674309 40.622432708740234 0.020959545479122266 121.10658482614093 735.0213623046875 724.5989990234375 14936.0 560.8902893066406 937.8738098144531 117.96670532226562 60.507545471191406 -sub-ds205s09_task-view_acq-LR_run-01_bold 0.003031643835616438 0.012794970273972603 0 21.39934610041667 1.0686129045833328 0.9966863591666666 0.5128969697496689 1203.4053955078125 0.3139861429704936 45 61.64383561643836 1.7920466666666666 1.6958 1.9183625 1.7619775 0.0375772 -0.004670785274356604 0.01962435245513916 73 53 53 27 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