Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Fatal Python error: Bus error #2718

Open
jiyanuo opened this issue Feb 18, 2022 · 0 comments
Open

Fatal Python error: Bus error #2718

jiyanuo opened this issue Feb 18, 2022 · 0 comments
Labels

Comments

@jiyanuo
Copy link

jiyanuo commented Feb 18, 2022

What happened?

What's the meaning of the error?Could someone help me?Thank you very much!

What command did you use?

fmriprep-docker D:\bids D:\bids\derivatives participant --participant-label 01 --fs-license-file D:\license.txt --fs-no-reconall
Warning: <8GB of RAM is available within your Docker environment.
Some parts of fMRIPrep may fail to complete.
Continue anyway? [y/N]
RUNNING: docker run --rm -e DOCKER_VERSION_8395080871=20.10.12 -it -v D:\license.txt:/opt/freesurfer/license.txt:ro -v D:\bids:/data:ro -v D:\bids\derivatives:/out nipreps/fmriprep:21.0.1 /data /out participant --participant-label 01 --fs-no-reconall

What version of fMRIPrep are you running?

21.0.1

How are you running fMRIPrep?

Docker

Is your data BIDS valid?

Yes

Are you reusing any previously computed results?

FreeSurfer

Please copy and paste any relevant log output.

Fatal Python error: Bus error

Current thread 0x00007fbba8912740 (most recent call first):
  File "<frozen importlib._bootstrap>", line 219 in _call_with_frames_removed
  File "<frozen importlib._bootstrap_external>", line 1166 in create_module
  File "<frozen importlib._bootstrap>", line 556 in module_from_spec
  File "<frozen importlib._bootstrap>", line 657 in _load_unlocked
  File "<frozen importlib._bootstrap>", line 975 in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 991 in _find_and_load
  File "<frozen importlib._bootstrap>", line 219 in _call_with_frames_removed
  File "<frozen importlib._bootstrap_external>", line 1174 in exec_module
  File "<frozen importlib._bootstrap>", line 671 in _load_unlocked
  File "<frozen importlib._bootstrap>", line 975 in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 991 in _find_and_load
  File "<frozen importlib._bootstrap>", line 219 in _call_with_frames_removed
  File "<frozen importlib._bootstrap_external>", line 1174 in exec_module
  File "<frozen importlib._bootstrap>", line 671 in _load_unlocked
  File "<frozen importlib._bootstrap>", line 975 in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 991 in _find_and_load
  File "<frozen importlib._bootstrap>", line 219 in _call_with_frames_removed
  File "<frozen importlib._bootstrap_external>", line 1174 in exec_module
  File "<frozen importlib._bootstrap>", line 671 in _load_unlocked
  File "<frozen importlib._bootstrap>", line 975 in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 991 in _find_and_load
  File "/opt/conda/lib/python3.8/site-packages/pandas/_libs/tslibs/__init__.py", line 30 in <module>
  File "<frozen importlib._bootstrap>", line 219 in _call_with_frames_removed
  File "<frozen importlib._bootstrap_external>", line 848 in exec_module
  File "<frozen importlib._bootstrap>", line 671 in _load_unlocked
  File "<frozen importlib._bootstrap>", line 975 in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 991 in _find_and_load
  File "<frozen importlib._bootstrap>", line 219 in _call_with_frames_removed
  File "<frozen importlib._bootstrap>", line 961 in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 991 in _find_and_load
  File "<frozen importlib._bootstrap>", line 219 in _call_with_frames_removed
  File "<frozen importlib._bootstrap_external>", line 1174 in exec_module
  File "<frozen importlib._bootstrap>", line 671 in _load_unlocked
  File "<frozen importlib._bootstrap>", line 975 in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 991 in _find_and_load
  File "<frozen importlib._bootstrap>", line 219 in _call_with_frames_removed
  File "<frozen importlib._bootstrap_external>", line 1174 in exec_module
  File "<frozen importlib._bootstrap>", line 671 in _load_unlocked
  File "<frozen importlib._bootstrap>", line 975 in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 991 in _find_and_load
  File "<frozen importlib._bootstrap>", line 219 in _call_with_frames_removed
  File "<frozen importlib._bootstrap_external>", line 1174 in exec_module
  File "<frozen importlib._bootstrap>", line 671 in _load_unlocked
  File "<frozen importlib._bootstrap>", line 975 in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 991 in _find_and_load
  File "/opt/conda/lib/python3.8/site-packages/pandas/_libs/__init__.py", line 13 in <module>
  File "<frozen importlib._bootstrap>", line 219 in _call_with_frames_removed
  File "<frozen importlib._bootstrap_external>", line 848 in exec_module
  File "<frozen importlib._bootstrap>", line 671 in _load_unlocked
  File "<frozen importlib._bootstrap>", line 975 in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 991 in _find_and_load
  File "/opt/conda/lib/python3.8/site-packages/pandas/__init__.py", line 29 in <module>
  File "<frozen importlib._bootstrap>", line 219 in _call_with_frames_removed
  File "<frozen importlib._bootstrap_external>", line 848 in exec_module
  File "<frozen importlib._bootstrap>", line 671 in _load_unlocked
  File "<frozen importlib._bootstrap>", line 975 in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 991 in _find_and_load
  File "/opt/conda/lib/python3.8/site-packages/fmriprep/interfaces/confounds.py", line 36 in <module>
  File "<frozen importlib._bootstrap>", line 219 in _call_with_frames_removed
  File "<frozen importlib._bootstrap_external>", line 848 in exec_module
  File "<frozen importlib._bootstrap>", line 671 in _load_unlocked
  File "<frozen importlib._bootstrap>", line 975 in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 991 in _find_and_load
  File "/opt/conda/lib/python3.8/site-packages/fmriprep/workflows/bold/confounds.py", line 41 in <module>
  File "<frozen importlib._bootstrap>", line 219 in _call_with_frames_removed
  File "<frozen importlib._bootstrap_external>", line 848 in exec_module
  File "<frozen importlib._bootstrap>", line 671 in _load_unlocked
  File "<frozen importlib._bootstrap>", line 975 in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 991 in _find_and_load
  File "/opt/conda/lib/python3.8/site-packages/fmriprep/workflows/bold/base.py", line 49 in <module>
  File "<frozen importlib._bootstrap>", line 219 in _call_with_frames_removed
  File "<frozen importlib._bootstrap_external>", line 848 in exec_module
  File "<frozen importlib._bootstrap>", line 671 in _load_unlocked
  File "<frozen importlib._bootstrap>", line 975 in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 991 in _find_and_load
  File "/opt/conda/lib/python3.8/site-packages/fmriprep/workflows/bold/__init__.py", line 19 in <module>
  File "<frozen importlib._bootstrap>", line 219 in _call_with_frames_removed
  File "<frozen importlib._bootstrap_external>", line 848 in exec_module
  File "<frozen importlib._bootstrap>", line 671 in _load_unlocked
  File "<frozen importlib._bootstrap>", line 975 in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 991 in _find_and_load
  File "/opt/conda/lib/python3.8/site-packages/fmriprep/workflows/base.py", line 42 in <module>
  File "<frozen importlib._bootstrap>", line 219 in _call_with_frames_removed
  File "<frozen importlib._bootstrap_external>", line 848 in exec_module
  File "<frozen importlib._bootstrap>", line 671 in _load_unlocked
  File "<frozen importlib._bootstrap>", line 975 in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 991 in _find_and_load
  File "/opt/conda/lib/python3.8/site-packages/fmriprep/cli/workflow.py", line 44 in build_workflow
  File "/opt/conda/lib/python3.8/multiprocessing/process.py", line 108 in run
  File "/opt/conda/lib/python3.8/multiprocessing/process.py", line 315 in _bootstrap
  File "/opt/conda/lib/python3.8/multiprocessing/spawn.py", line 129 in _main
  File "/opt/conda/lib/python3.8/multiprocessing/forkserver.py", line 319 in _serve_one
  File "/opt/conda/lib/python3.8/multiprocessing/forkserver.py", line 280 in main
  File "<string>", line 1 in <module>

Additional information / screenshots

No response

@jiyanuo jiyanuo added the bug label Feb 18, 2022
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
Projects
None yet
Development

No branches or pull requests

1 participant