matchseries.ipynb

{
 "cells": [
  {
   "cell_type": "code",
   "execution_count": 1,
   "metadata": {},
   "outputs": [],
   "source": [
    "from pyiron_experimental import Project"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 2,
   "metadata": {},
   "outputs": [],
   "source": [
    "pr = Project('test')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 3,
   "metadata": {},
   "outputs": [],
   "source": [
    "pr.remove_jobs_silently(recursive=True)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 4,
   "metadata": {},
   "outputs": [],
   "source": [
    "job = pr.create_job(job_type=pr.job_type.MatchSeries, job_name=\"toy\")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 5,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/html": [
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       "\n",
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       "    }\n",
       "\n",
       "    .dataframe thead th {\n",
       "        text-align: right;\n",
       "    }\n",
       "</style>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>Parameter</th>\n",
       "      <th>Value</th>\n",
       "      <th>Comment</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>0</th>\n",
       "      <td>deformationModel</td>\n",
       "      <td>0</td>\n",
       "      <td></td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1</th>\n",
       "      <td>reduceDeformations</td>\n",
       "      <td>1</td>\n",
       "      <td></td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>2</th>\n",
       "      <td>templateNamePattern</td>\n",
       "      <td>testImg_%d_STEM.tif</td>\n",
       "      <td></td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>3</th>\n",
       "      <td>templateNumOffset</td>\n",
       "      <td>0</td>\n",
       "      <td></td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>4</th>\n",
       "      <td>templateNumStep</td>\n",
       "      <td>1</td>\n",
       "      <td></td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>5</th>\n",
       "      <td>numTemplates</td>\n",
       "      <td>4</td>\n",
       "      <td></td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>6</th>\n",
       "      <td>cropInput</td>\n",
       "      <td>0</td>\n",
       "      <td></td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>7</th>\n",
       "      <td>cropStartX</td>\n",
       "      <td>742</td>\n",
       "      <td></td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>8</th>\n",
       "      <td>cropStartY</td>\n",
       "      <td>984</td>\n",
       "      <td></td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>9</th>\n",
       "      <td>dontResizeOrCropReference</td>\n",
       "      <td>0</td>\n",
       "      <td></td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>10</th>\n",
       "      <td>preSmoothSigma</td>\n",
       "      <td>0</td>\n",
       "      <td></td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>11</th>\n",
       "      <td>saveRefAndTempl</td>\n",
       "      <td>0</td>\n",
       "      <td></td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>12</th>\n",
       "      <td>numExtraStages</td>\n",
       "      <td>2</td>\n",
       "      <td></td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>13</th>\n",
       "      <td>saveDirectory</td>\n",
       "      <td>results/</td>\n",
       "      <td></td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>14</th>\n",
       "      <td>dontNormalizeInputImages</td>\n",
       "      <td>0</td>\n",
       "      <td></td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>15</th>\n",
       "      <td>enhanceContrastSaturationPercentage</td>\n",
       "      <td>0.15</td>\n",
       "      <td></td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>16</th>\n",
       "      <td>normalizeMinToZero</td>\n",
       "      <td>1</td>\n",
       "      <td></td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>17</th>\n",
       "      <td>lambda</td>\n",
       "      <td>200</td>\n",
       "      <td></td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>18</th>\n",
       "      <td>lambdaFactor</td>\n",
       "      <td>1</td>\n",
       "      <td></td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>19</th>\n",
       "      <td>MaxGradientDescentSteps</td>\n",
       "      <td>100</td>\n",
       "      <td></td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>20</th>\n",
       "      <td>UseComponentWiseTimestep</td>\n",
       "      <td>1</td>\n",
       "      <td></td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>21</th>\n",
       "      <td>maxGDIterations</td>\n",
       "      <td>200</td>\n",
       "      <td></td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>22</th>\n",
       "      <td>stopEpsilon</td>\n",
       "      <td>1e-6</td>\n",
       "      <td></td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>23</th>\n",
       "      <td>startLevel</td>\n",
       "      <td>6</td>\n",
       "      <td></td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>24</th>\n",
       "      <td>stopLevel</td>\n",
       "      <td>8</td>\n",
       "      <td></td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>25</th>\n",
       "      <td>precisionLevel</td>\n",
       "      <td>8</td>\n",
       "      <td></td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>26</th>\n",
       "      <td>refineStartLevel</td>\n",
       "      <td>7</td>\n",
       "      <td></td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>27</th>\n",
       "      <td>refineStopLevel</td>\n",
       "      <td>8</td>\n",
       "      <td></td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>28</th>\n",
       "      <td>checkboxWidth</td>\n",
       "      <td>8</td>\n",
       "      <td></td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>29</th>\n",
       "      <td>resizeInput</td>\n",
       "      <td>0</td>\n",
       "      <td></td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>30</th>\n",
       "      <td>resampleInsteadOfProlongateDeformation</td>\n",
       "      <td>1</td>\n",
       "      <td></td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>31</th>\n",
       "      <td>dontAccumulateDeformation</td>\n",
       "      <td>0</td>\n",
       "      <td></td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>32</th>\n",
       "      <td>reuseStage1Results</td>\n",
       "      <td>1</td>\n",
       "      <td></td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>33</th>\n",
       "      <td>extraStagesLambdaFactor</td>\n",
       "      <td>0.1</td>\n",
       "      <td></td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>34</th>\n",
       "      <td>useMedianAsNewTarget</td>\n",
       "      <td>1</td>\n",
       "      <td></td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>35</th>\n",
       "      <td>calcInverseDeformation</td>\n",
       "      <td>0</td>\n",
       "      <td></td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>36</th>\n",
       "      <td>skipStage1</td>\n",
       "      <td>0</td>\n",
       "      <td></td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>37</th>\n",
       "      <td>saveNamedDeformedTemplates</td>\n",
       "      <td>1</td>\n",
       "      <td></td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>38</th>\n",
       "      <td>saveNamedDeformedTemplatesUsingNearestNeighborInterpolation</td>\n",
       "      <td>1</td>\n",
       "      <td></td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>39</th>\n",
       "      <td>saveNamedDeformedTemplatesExtendedWithMean</td>\n",
       "      <td>1</td>\n",
       "      <td></td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>40</th>\n",
       "      <td>saveDeformedTemplates</td>\n",
       "      <td>1</td>\n",
       "      <td></td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>41</th>\n",
       "      <td>saveNamedDeformedDMXTemplatesAsDMX</td>\n",
       "      <td>1</td>\n",
       "      <td></td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>42</th>\n",
       "      <td>saveNamedDeformations</td>\n",
       "      <td>1</td>\n",
       "      <td></td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "</div>"
      ],
      "text/plain": [
       "                                                      Parameter  \\\n",
       "0                                              deformationModel   \n",
       "1                                            reduceDeformations   \n",
       "2                                           templateNamePattern   \n",
       "3                                             templateNumOffset   \n",
       "4                                               templateNumStep   \n",
       "5                                                  numTemplates   \n",
       "6                                                     cropInput   \n",
       "7                                                    cropStartX   \n",
       "8                                                    cropStartY   \n",
       "9                                     dontResizeOrCropReference   \n",
       "10                                               preSmoothSigma   \n",
       "11                                              saveRefAndTempl   \n",
       "12                                               numExtraStages   \n",
       "13                                                saveDirectory   \n",
       "14                                     dontNormalizeInputImages   \n",
       "15                          enhanceContrastSaturationPercentage   \n",
       "16                                           normalizeMinToZero   \n",
       "17                                                       lambda   \n",
       "18                                                 lambdaFactor   \n",
       "19                                      MaxGradientDescentSteps   \n",
       "20                                     UseComponentWiseTimestep   \n",
       "21                                              maxGDIterations   \n",
       "22                                                  stopEpsilon   \n",
       "23                                                   startLevel   \n",
       "24                                                    stopLevel   \n",
       "25                                               precisionLevel   \n",
       "26                                             refineStartLevel   \n",
       "27                                              refineStopLevel   \n",
       "28                                                checkboxWidth   \n",
       "29                                                  resizeInput   \n",
       "30                       resampleInsteadOfProlongateDeformation   \n",
       "31                                    dontAccumulateDeformation   \n",
       "32                                           reuseStage1Results   \n",
       "33                                      extraStagesLambdaFactor   \n",
       "34                                         useMedianAsNewTarget   \n",
       "35                                       calcInverseDeformation   \n",
       "36                                                   skipStage1   \n",
       "37                                   saveNamedDeformedTemplates   \n",
       "38  saveNamedDeformedTemplatesUsingNearestNeighborInterpolation   \n",
       "39                   saveNamedDeformedTemplatesExtendedWithMean   \n",
       "40                                        saveDeformedTemplates   \n",
       "41                           saveNamedDeformedDMXTemplatesAsDMX   \n",
       "42                                        saveNamedDeformations   \n",
       "\n",
       "                  Value Comment  \n",
       "0                     0          \n",
       "1                     1          \n",
       "2   testImg_%d_STEM.tif          \n",
       "3                     0          \n",
       "4                     1          \n",
       "5                     4          \n",
       "6                     0          \n",
       "7                   742          \n",
       "8                   984          \n",
       "9                     0          \n",
       "10                    0          \n",
       "11                    0          \n",
       "12                    2          \n",
       "13             results/          \n",
       "14                    0          \n",
       "15                 0.15          \n",
       "16                    1          \n",
       "17                  200          \n",
       "18                    1          \n",
       "19                  100          \n",
       "20                    1          \n",
       "21                  200          \n",
       "22                 1e-6          \n",
       "23                    6          \n",
       "24                    8          \n",
       "25                    8          \n",
       "26                    7          \n",
       "27                    8          \n",
       "28                    8          \n",
       "29                    0          \n",
       "30                    1          \n",
       "31                    0          \n",
       "32                    1          \n",
       "33                  0.1          \n",
       "34                    1          \n",
       "35                    0          \n",
       "36                    0          \n",
       "37                    1          \n",
       "38                    1          \n",
       "39                    1          \n",
       "40                    1          \n",
       "41                    1          \n",
       "42                    1          "
      ]
     },
     "execution_count": 5,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "job.input"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 6,
   "metadata": {},
   "outputs": [],
   "source": [
    "job.input[\"templateNamePattern\"] = \"testImg_%d_STEM.tif\""
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 7,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "The job toy was saved and received the ID: 1\n"
     ]
    }
   ],
   "source": [
    "job.run()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 8,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/html": [
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       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>id</th>\n",
       "      <th>status</th>\n",
       "      <th>chemicalformula</th>\n",
       "      <th>job</th>\n",
       "      <th>subjob</th>\n",
       "      <th>projectpath</th>\n",
       "      <th>project</th>\n",
       "      <th>timestart</th>\n",
       "      <th>timestop</th>\n",
       "      <th>totalcputime</th>\n",
       "      <th>computer</th>\n",
       "      <th>hamilton</th>\n",
       "      <th>hamversion</th>\n",
       "      <th>parentid</th>\n",
       "      <th>masterid</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>0</th>\n",
       "      <td>1</td>\n",
       "      <td>finished</td>\n",
       "      <td>None</td>\n",
       "      <td>toy</td>\n",
       "      <td>/toy</td>\n",
       "      <td>/home/jovyan/</td>\n",
       "      <td>test/</td>\n",
       "      <td>2020-09-10 17:17:33.746283</td>\n",
       "      <td>2020-09-10 17:18:46.947339</td>\n",
       "      <td>73.0</td>\n",
       "      <td>pyiron@jupyter-jan-2djanssen-2dpyiron-5fexperimental-2da4j6bv2z#1</td>\n",
       "      <td>GenericJob</td>\n",
       "      <td>0.4</td>\n",
       "      <td>None</td>\n",
       "      <td>None</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
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      ],
      "text/plain": [
       "   id    status chemicalformula  job subjob    projectpath project  \\\n",
       "0   1  finished            None  toy   /toy  /home/jovyan/   test/   \n",
       "\n",
       "                   timestart                   timestop  totalcputime  \\\n",
       "0 2020-09-10 17:17:33.746283 2020-09-10 17:18:46.947339          73.0   \n",
       "\n",
       "                                                            computer  \\\n",
       "0  pyiron@jupyter-jan-2djanssen-2dpyiron-5fexperimental-2da4j6bv2z#1   \n",
       "\n",
       "     hamilton hamversion parentid masterid  \n",
       "0  GenericJob        0.4     None     None  "
      ]
     },
     "execution_count": 8,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "pr.job_table()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 9,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "['Created directory results/\\n',\n",
       " 'reading reference image from: testImg_0_STEM.tif\\n',\n",
       " 'reading template image from: testImg_0_STEM.tif\\n',\n",
       " 'Created directory results/stage1/\\n',\n",
       " 'Using templates images ---------------------------------------\\n',\n",
       " 'testImg_1_STEM.tif\\n',\n",
       " 'testImg_2_STEM.tif\\n',\n",
       " 'testImg_3_STEM.tif\\n',\n",
       " '--------------------------------------------------------------\\n',\n",
       " 'Created directory results/stage1/0/\\n',\n",
       " '\\n',\n",
       " '--------------------------------------------------------\\n',\n",
       " 'Registration on level 6 started\\n',\n",
       " '--------------------------------------------------------\\n',\n",
       " '\\n',\n",
       " 'Initial energy: -0.237336046038\\n',\n",
       " '  1 steps, tau:    4.0000, sigma:  1.0000 energy: -0.755973821650\\n',\n",
       " '  2 steps, tau:    4.0000, sigma:  1.0000 energy: -0.855649652696\\n',\n",
       " '  3 steps, tau:    2.0000, sigma:  1.0000 energy: -0.869205300768\\n',\n",
       " '  4 steps, tau:    2.0000, sigma:  1.0000 energy: -0.872651849014\\n',\n",
       " '  5 steps, tau:    1.0000, sigma:  1.0000 energy: -0.872853640846\\n',\n",
       " '  6 steps, tau:    0.5000, sigma:  1.0000 energy: -0.872934017615\\n',\n",
       " '  7 steps, tau:    0.5000, sigma:  1.0000 energy: -0.873006457816\\n',\n",
       " '  8 steps, tau:    0.5000, sigma:  1.0000 energy: -0.873071729330\\n',\n",
       " '  9 steps, tau:    0.5000, sigma:  1.0000 energy: -0.873140563000\\n',\n",
       " ' 10 steps, tau:    0.2500, sigma:  1.0000 energy: -0.873176980391\\n',\n",
       " ' 11 steps, tau:    4.0000, sigma:  1.0000 energy: -0.873306496398\\n',\n",
       " ' 12 steps, tau:    0     , sigma:  1.0000 energy: -0.873306496398\\n',\n",
       " ' 13 steps, tau:    0     , sigma:  0.5000 energy: -0.873306496398\\n',\n",
       " ' 14 steps, tau:    0.0156, sigma:  0.2500 energy: -0.873308467313\\n',\n",
       " ' 15 steps, tau:    0.0156, sigma:  0.1250 energy: -0.873321034566\\n',\n",
       " ' 16 steps, tau:    4.e-03, sigma:  0.1250 energy: -0.873324388964\\n',\n",
       " ' 17 steps, tau:    2.e-03, sigma:  0.0625 energy: -0.873329175439\\n',\n",
       " ' 18 steps, tau:    1.e-03, sigma:  0.0312 energy: -0.873333950982\\n',\n",
       " ' 19 steps, tau:    5.e-04, sigma:  0.0156 energy: -0.873338015900\\n',\n",
       " ' 20 steps, tau:    2.e-04, sigma:  8.e-03 energy: -0.873340654547\\n',\n",
       " ' 21 steps, tau:    4.e-03, sigma:  4.e-03 energy: -0.873344228525\\n',\n",
       " ' 22 steps, tau:    0     , sigma:  2.e-03 energy: -0.873344228525\\n',\n",
       " ' 23 steps, tau:    0     , sigma:  1.e-03 energy: -0.873344228525\\n',\n",
       " ' 24 steps, tau:    0     , sigma:  5.e-04 energy: -0.873344228525\\n',\n",
       " ' 25 steps, tau:    0     , sigma:  2.e-04 energy: -0.873344228525\\n',\n",
       " ' 26 steps, tau:    0     , sigma:  1.e-04 energy: -0.873344228525\\n',\n",
       " 'Descent needed 26 step(s).\\n',\n",
       " '\\n',\n",
       " '--------------------------------------------------------\\n',\n",
       " 'Registration on level 7 started\\n',\n",
       " '--------------------------------------------------------\\n',\n",
       " '\\n',\n",
       " 'Initial energy: -0.850944614796\\n',\n",
       " '  1 steps, tau:    8.0000, sigma:  1.0000 energy: -0.851522954889\\n',\n",
       " '  2 steps, tau:    4.0000, sigma:  1.0000 energy: -0.851551105267\\n',\n",
       " '  3 steps, tau:    8.0000, sigma:  1.0000 energy: -0.851599049719\\n',\n",
       " '  4 steps, tau:    2.0000, sigma:  1.0000 energy: -0.851619836538\\n',\n",
       " '  5 steps, tau:    1.0000, sigma:  1.0000 energy: -0.851632679579\\n',\n",
       " '  6 steps, tau:    0.5000, sigma:  1.0000 energy: -0.851638901534\\n',\n",
       " '  7 steps, tau:    0.2500, sigma:  0.5000 energy: -0.851642516276\\n',\n",
       " '  8 steps, tau:    0.2500, sigma:  0.2500 energy: -0.851647949446\\n',\n",
       " '  9 steps, tau:    0.1250, sigma:  0.1250 energy: -0.851652001819\\n',\n",
       " ' 10 steps, tau:    0.0312, sigma:  0.0625 energy: -0.851653465067\\n',\n",
       " ' 11 steps, tau:    0.0625, sigma:  0.0312 energy: -0.851655262137\\n',\n",
       " ' 12 steps, tau:    0.0312, sigma:  0.0156 energy: -0.851655750625\\n',\n",
       " ' 13 steps, tau:    0     , sigma:  8.e-03 energy: -0.851655750625\\n',\n",
       " ' 14 steps, tau:    0     , sigma:  4.e-03 energy: -0.851655750625\\n',\n",
       " ' 15 steps, tau:    0     , sigma:  2.e-03 energy: -0.851655750625\\n',\n",
       " ' 16 steps, tau:    0     , sigma:  1.e-03 energy: -0.851655750625\\n',\n",
       " ' 17 steps, tau:    0     , sigma:  5.e-04 energy: -0.851655750625\\n',\n",
       " ' 18 steps, tau:    0     , sigma:  2.e-04 energy: -0.851655750625\\n',\n",
       " ' 19 steps, tau:    0     , sigma:  1.e-04 energy: -0.851655750625\\n',\n",
       " 'Descent needed 19 step(s).\\n',\n",
       " '\\n',\n",
       " '--------------------------------------------------------\\n',\n",
       " 'Registration on level 8 started\\n',\n",
       " '--------------------------------------------------------\\n',\n",
       " '\\n',\n",
       " 'Initial energy: -0.808449901816\\n',\n",
       " '  1 steps, tau:   16.0000, sigma:  1.0000 energy: -0.808628534868\\n',\n",
       " '  2 steps, tau:   32.0000, sigma:  1.0000 energy: -0.808789964439\\n',\n",
       " '  3 steps, tau:   64.0000, sigma:  1.0000 energy: -0.808931042519\\n',\n",
       " '  4 steps, tau:   16.0000, sigma:  1.0000 energy: -0.808953565203\\n',\n",
       " '  5 steps, tau:   16.0000, sigma:  1.0000 energy: -0.808975621499\\n',\n",
       " '  6 steps, tau:   32.0000, sigma:  1.0000 energy: -0.809000610328\\n',\n",
       " '  7 steps, tau:   64.0000, sigma:  1.0000 energy: -0.809035912019\\n',\n",
       " '  8 steps, tau:   64.0000, sigma:  1.0000 energy: -0.809070523351\\n',\n",
       " '  9 steps, tau:   64.0000, sigma:  1.0000 energy: -0.809082678444\\n',\n",
       " ' 10 steps, tau:    0     , sigma:  1.0000 energy: -0.809082678444\\n',\n",
       " ' 11 steps, tau:    4.0000, sigma:  0.5000 energy: -0.809086194698\\n',\n",
       " ' 12 steps, tau:    4.0000, sigma:  0.2500 energy: -0.809092646943\\n',\n",
       " ' 13 steps, tau:    4.0000, sigma:  0.1250 energy: -0.809095514639\\n',\n",
       " ' 14 steps, tau:    0.1250, sigma:  0.0625 energy: -0.809095582218\\n',\n",
       " ' 15 steps, tau:    0.0312, sigma:  0.0312 energy: -0.809095735582\\n',\n",
       " ' 16 steps, tau:    8.e-03, sigma:  0.0156 energy: -0.809095852130\\n',\n",
       " ' 17 steps, tau:    4.e-03, sigma:  8.e-03 energy: -0.809095966451\\n',\n",
       " ' 18 steps, tau:    4.e-03, sigma:  4.e-03 energy: -0.809096130648\\n',\n",
       " ' 19 steps, tau:    2.e-03, sigma:  2.e-03 energy: -0.809096255143\\n',\n",
       " ' 20 steps, tau:    4.e-03, sigma:  1.e-03 energy: -0.809096350078\\n',\n",
       " ' 21 steps, tau:    2.e-03, sigma:  5.e-04 energy: -0.809096389046\\n',\n",
       " ' 22 steps, tau:    1.e-03, sigma:  2.e-04 energy: -0.809096393278\\n',\n",
       " ' 23 steps, tau:    2.e-04, sigma:  1.e-04 energy: -0.809096394719\\n',\n",
       " 'Descent needed 23 step(s).\\n',\n",
       " 'Created directory results/stage1/1/\\n',\n",
       " '\\n',\n",
       " '--------------------------------------------------------\\n',\n",
       " 'Registration on level 6 started\\n',\n",
       " '--------------------------------------------------------\\n',\n",
       " '\\n',\n",
       " 'Initial energy: -0.768494269957\\n',\n",
       " '  1 steps, tau:    2.0000, sigma:  1.0000 energy: -0.943193458057\\n',\n",
       " '  2 steps, tau:    2.0000, sigma:  1.0000 energy: -0.950589403784\\n',\n",
       " '  3 steps, tau:    2.0000, sigma:  1.0000 energy: -0.953545957339\\n',\n",
       " '  4 steps, tau:    2.0000, sigma:  1.0000 energy: -0.954410511448\\n',\n",
       " '  5 steps, tau:    4.0000, sigma:  1.0000 energy: -0.954589723416\\n',\n",
       " '  6 steps, tau:    0.5000, sigma:  1.0000 energy: -0.954603408655\\n',\n",
       " '  7 steps, tau:    0.5000, sigma:  1.0000 energy: -0.954615510442\\n',\n",
       " '  8 steps, tau:    1.0000, sigma:  1.0000 energy: -0.954625792803\\n',\n",
       " '  9 steps, tau:    8.0000, sigma:  1.0000 energy: -0.954638177439\\n',\n",
       " ' 10 steps, tau:    0     , sigma:  1.0000 energy: -0.954638177439\\n',\n",
       " ' 11 steps, tau:    0     , sigma:  0.5000 energy: -0.954638177439\\n',\n",
       " ' 12 steps, tau:    0     , sigma:  0.2500 energy: -0.954638177439\\n',\n",
       " ' 13 steps, tau:    0     , sigma:  0.1250 energy: -0.954638177439\\n',\n",
       " ' 14 steps, tau:    1.e-03, sigma:  0.0625 energy: -0.954638206284\\n',\n",
       " ' 15 steps, tau:    8.e-03, sigma:  0.0312 energy: -0.954639232112\\n',\n",
       " ' 16 steps, tau:    4.e-03, sigma:  0.0156 energy: -0.954640069214\\n',\n",
       " ' 17 steps, tau:    0     , sigma:  8.e-03 energy: -0.954640069214\\n',\n",
       " ' 18 steps, tau:    0     , sigma:  4.e-03 energy: -0.954640069214\\n',\n",
       " ' 19 steps, tau:    0     , sigma:  2.e-03 energy: -0.954640069214\\n',\n",
       " ' 20 steps, tau:    0     , sigma:  1.e-03 energy: -0.954640069214\\n',\n",
       " ' 21 steps, tau:    0     , sigma:  5.e-04 energy: -0.954640069214\\n',\n",
       " ' 22 steps, tau:    0     , sigma:  2.e-04 energy: -0.954640069214\\n',\n",
       " ' 23 steps, tau:    0     , sigma:  1.e-04 energy: -0.954640069214\\n',\n",
       " 'Descent needed 23 step(s).\\n',\n",
       " '\\n',\n",
       " '--------------------------------------------------------\\n',\n",
       " 'Registration on level 7 started\\n',\n",
       " '--------------------------------------------------------\\n',\n",
       " '\\n',\n",
       " 'Initial energy: -0.937858559541\\n',\n",
       " '  1 steps, tau:    0     , sigma:  1.0000 energy: -0.937858559541\\n',\n",
       " '  2 steps, tau:    0     , sigma:  0.5000 energy: -0.937858559541\\n',\n",
       " '  3 steps, tau:    0.5000, sigma:  0.2500 energy: -0.937886952646\\n',\n",
       " '  4 steps, tau:    0.0625, sigma:  0.2500 energy: -0.937891543940\\n',\n",
       " '  5 steps, tau:    0.0312, sigma:  0.1250 energy: -0.937900826712\\n',\n",
       " '  6 steps, tau:    0.0156, sigma:  0.0625 energy: -0.937915026154\\n',\n",
       " '  7 steps, tau:    8.e-03, sigma:  0.0625 energy: -0.937920584118\\n',\n",
       " '  8 steps, tau:    4.e-03, sigma:  0.0312 energy: -0.937927002097\\n',\n",
       " '  9 steps, tau:    5.e-04, sigma:  0.0156 energy: -0.937928535868\\n',\n",
       " ' 10 steps, tau:    2.e-04, sigma:  8.e-03 energy: -0.937930428617\\n',\n",
       " ' 11 steps, tau:    2.e-03, sigma:  4.e-03 energy: -0.937932712238\\n',\n",
       " ' 12 steps, tau:    2.e-03, sigma:  2.e-03 energy: -0.937933467431\\n',\n",
       " ' 13 steps, tau:    0     , sigma:  1.e-03 energy: -0.937933467431\\n',\n",
       " ' 14 steps, tau:    0     , sigma:  5.e-04 energy: -0.937933467431\\n',\n",
       " ' 15 steps, tau:    0     , sigma:  2.e-04 energy: -0.937933467431\\n',\n",
       " ' 16 steps, tau:    0     , sigma:  1.e-04 energy: -0.937933467431\\n',\n",
       " 'Descent needed 16 step(s).\\n',\n",
       " '\\n',\n",
       " '--------------------------------------------------------\\n',\n",
       " 'Registration on level 8 started\\n',\n",
       " '--------------------------------------------------------\\n',\n",
       " '\\n',\n",
       " 'Initial energy: -0.893258449117\\n',\n",
       " '  1 steps, tau:   32.0000, sigma:  1.0000 energy: -0.893797270041\\n',\n",
       " '  2 steps, tau:   32.0000, sigma:  1.0000 energy: -0.894033472283\\n',\n",
       " '  3 steps, tau:   16.0000, sigma:  1.0000 energy: -0.894115699464\\n',\n",
       " '  4 steps, tau:   16.0000, sigma:  1.0000 energy: -0.894185852764\\n',\n",
       " '  5 steps, tau:   16.0000, sigma:  1.0000 energy: -0.894250775593\\n',\n",
       " '  6 steps, tau:   32.0000, sigma:  1.0000 energy: -0.894300907653\\n',\n",
       " '  7 steps, tau:    0     , sigma:  1.0000 energy: -0.894300907653\\n',\n",
       " '  8 steps, tau:    0     , sigma:  0.5000 energy: -0.894300907653\\n',\n",
       " '  9 steps, tau:    1.0000, sigma:  0.2500 energy: -0.894304388315\\n',\n",
       " ' 10 steps, tau:    0.1250, sigma:  0.1250 energy: -0.894306053240\\n',\n",
       " ' 11 steps, tau:    0     , sigma:  0.0625 energy: -0.894306053240\\n',\n",
       " ' 12 steps, tau:    0     , sigma:  0.0312 energy: -0.894306053240\\n',\n",
       " ' 13 steps, tau:    2.e-03, sigma:  0.0156 energy: -0.894306261454\\n',\n",
       " ' 14 steps, tau:    2.e-03, sigma:  8.e-03 energy: -0.894307330923\\n',\n",
       " ' 15 steps, tau:    1.e-03, sigma:  4.e-03 energy: -0.894308536858\\n',\n",
       " ' 16 steps, tau:    5.e-04, sigma:  2.e-03 energy: -0.894309173552\\n',\n",
       " ' 17 steps, tau:    5.e-04, sigma:  1.e-03 energy: -0.894309614413\\n',\n",
       " ' 18 steps, tau:    0     , sigma:  5.e-04 energy: -0.894309614413\\n',\n",
       " ' 19 steps, tau:    0     , sigma:  2.e-04 energy: -0.894309614413\\n',\n",
       " ' 20 steps, tau:    0     , sigma:  1.e-04 energy: -0.894309614413\\n',\n",
       " 'Descent needed 20 step(s).\\n',\n",
       " 'Created directory results/stage1/1-r/\\n',\n",
       " '\\n',\n",
       " '--------------------------------------------------------\\n',\n",
       " 'Registration on level 7 started\\n',\n",
       " '--------------------------------------------------------\\n',\n",
       " '\\n',\n",
       " 'Initial energy: -0.921367792539\\n',\n",
       " '  1 steps, tau:    4.0000, sigma:  1.0000 energy: -0.921870049895\\n',\n",
       " '  2 steps, tau:    8.0000, sigma:  1.0000 energy: -0.922229286244\\n',\n",
       " '  3 steps, tau:    8.0000, sigma:  1.0000 energy: -0.922490219429\\n',\n",
       " '  4 steps, tau:    8.0000, sigma:  1.0000 energy: -0.922646916907\\n',\n",
       " '  5 steps, tau:    4.e-09, sigma:  1.0000 energy: -0.922646916907\\n',\n",
       " '  6 steps, tau:    0.0156, sigma:  0.5000 energy: -0.922647396840\\n',\n",
       " '  7 steps, tau:    0.0312, sigma:  0.2500 energy: -0.922654100999\\n',\n",
       " '  8 steps, tau:    8.e-03, sigma:  0.1250 energy: -0.922662207078\\n',\n",
       " '  9 steps, tau:    2.e-03, sigma:  0.0625 energy: -0.922668769247\\n',\n",
       " ' 10 steps, tau:    5.e-04, sigma:  0.0312 energy: -0.922673556695\\n',\n",
       " ' 11 steps, tau:    0.0156, sigma:  0.0156 energy: -0.922695935063\\n',\n",
       " ' 12 steps, tau:    8.e-03, sigma:  0.0156 energy: -0.922699989075\\n',\n",
       " ' 13 steps, tau:    4.e-03, sigma:  8.e-03 energy: -0.922703383640\\n',\n",
       " ' 14 steps, tau:    4.e-03, sigma:  4.e-03 energy: -0.922706373114\\n',\n",
       " ' 15 steps, tau:    4.e-03, sigma:  2.e-03 energy: -0.922709474258\\n',\n",
       " ' 16 steps, tau:    2.e-03, sigma:  1.e-03 energy: -0.922711216389\\n',\n",
       " ' 17 steps, tau:    1.e-03, sigma:  5.e-04 energy: -0.922711871582\\n',\n",
       " ' 18 steps, tau:    1.e-03, sigma:  2.e-04 energy: -0.922712452212\\n',\n",
       " ' 19 steps, tau:    1.e-03, sigma:  1.e-04 energy: -0.922713024137\\n',\n",
       " 'Descent needed 19 step(s).\\n',\n",
       " '\\n',\n",
       " '--------------------------------------------------------\\n',\n",
       " 'Registration on level 8 started\\n',\n",
       " '--------------------------------------------------------\\n',\n",
       " '\\n',\n",
       " 'Initial energy: -0.876696955974\\n',\n",
       " '  1 steps, tau:   16.0000, sigma:  1.0000 energy: -0.877202935507\\n',\n",
       " '  2 steps, tau:    8.0000, sigma:  1.0000 energy: -0.877330077740\\n',\n",
       " '  3 steps, tau:   16.0000, sigma:  1.0000 energy: -0.877445710526\\n',\n",
       " '  4 steps, tau:   32.0000, sigma:  1.0000 energy: -0.877631901073\\n',\n",
       " '  5 steps, tau:    4.0000, sigma:  1.0000 energy: -0.877668209829\\n',\n",
       " '  6 steps, tau:    4.0000, sigma:  1.0000 energy: -0.877706435682\\n',\n",
       " '  7 steps, tau:    8.0000, sigma:  1.0000 energy: -0.877749659651\\n',\n",
       " '  8 steps, tau:   32.0000, sigma:  1.0000 energy: -0.877809725965\\n',\n",
       " '  9 steps, tau:    4.e-09, sigma:  1.0000 energy: -0.877809725965\\n',\n",
       " ' 10 steps, tau:    0.5000, sigma:  0.5000 energy: -0.877815887841\\n',\n",
       " ' 11 steps, tau:    8.0000, sigma:  0.2500 energy: -0.877914066420\\n',\n",
       " ' 12 steps, tau:    8.0000, sigma:  0.2500 energy: -0.877943771213\\n',\n",
       " ' 13 steps, tau:   16.0000, sigma:  0.2500 energy: -0.877973873825\\n',\n",
       " ' 14 steps, tau:    0.2500, sigma:  0.2500 energy: -0.877975115269\\n',\n",
       " ' 15 steps, tau:    0.1250, sigma:  0.1250 energy: -0.877979782106\\n',\n",
       " ' 16 steps, tau:    0.0312, sigma:  0.0625 energy: -0.877983956803\\n',\n",
       " ' 17 steps, tau:    8.e-03, sigma:  0.0312 energy: -0.877986379649\\n',\n",
       " ' 18 steps, tau:    4.e-03, sigma:  0.0156 energy: -0.877988719323\\n',\n",
       " ' 19 steps, tau:    1.e-03, sigma:  8.e-03 energy: -0.877989738708\\n',\n",
       " ' 20 steps, tau:    2.e-04, sigma:  4.e-03 energy: -0.877990266884\\n',\n",
       " ' 21 steps, tau:    2.e-03, sigma:  2.e-03 energy: -0.877991107686\\n',\n",
       " ' 22 steps, tau:    2.e-03, sigma:  1.e-03 energy: -0.877991571378\\n',\n",
       " ' 23 steps, tau:    4.e-03, sigma:  5.e-04 energy: -0.877992353588\\n',\n",
       " ' 24 steps, tau:    4.e-03, sigma:  2.e-04 energy: -0.877993150979\\n',\n",
       " ' 25 steps, tau:    1.e-03, sigma:  1.e-04 energy: -0.877993294106\\n',\n",
       " 'Descent needed 25 step(s).\\n',\n",
       " 'Created directory results/stage1/2/\\n',\n",
       " '\\n',\n",
       " '--------------------------------------------------------\\n',\n",
       " 'Registration on level 6 started\\n',\n",
       " '--------------------------------------------------------\\n',\n",
       " '\\n',\n",
       " 'Initial energy: -0.060670810063\\n',\n",
       " '  1 steps, tau:    4.0000, sigma:  1.0000 energy: -0.245338211315\\n',\n",
       " '  2 steps, tau:    0.5000, sigma:  1.0000 energy: -0.261066412249\\n',\n",
       " '  3 steps, tau:    1.0000, sigma:  1.0000 energy: -0.272057842284\\n',\n",
       " '  4 steps, tau:    8.0000, sigma:  1.0000 energy: -0.405173825124\\n',\n",
       " '  5 steps, tau:    8.0000, sigma:  1.0000 energy: -0.665959770920\\n',\n",
       " '  6 steps, tau:    1.0000, sigma:  1.0000 energy: -0.679435676126\\n',\n",
       " '  7 steps, tau:    0.5000, sigma:  1.0000 energy: -0.685873405148\\n',\n",
       " '  8 steps, tau:    0.5000, sigma:  1.0000 energy: -0.690106945744\\n',\n",
       " '  9 steps, tau:    1.0000, sigma:  1.0000 energy: -0.694997035517\\n',\n",
       " ' 10 steps, tau:    2.0000, sigma:  1.0000 energy: -0.705269680900\\n',\n",
       " ' 11 steps, tau:    2.0000, sigma:  1.0000 energy: -0.712870345424\\n',\n",
       " ' 12 steps, tau:    4.0000, sigma:  1.0000 energy: -0.714470856709\\n',\n",
       " ' 13 steps, tau:    2.0000, sigma:  1.0000 energy: -0.715076429313\\n',\n",
       " ' 14 steps, tau:    0.5000, sigma:  1.0000 energy: -0.715097752834\\n',\n",
       " ' 15 steps, tau:    0     , sigma:  1.0000 energy: -0.715097752834\\n',\n",
       " ' 16 steps, tau:    0     , sigma:  0.5000 energy: -0.715097752834\\n',\n",
       " ' 17 steps, tau:    0     , sigma:  0.2500 energy: -0.715097752834\\n',\n",
       " ' 18 steps, tau:    0.0625, sigma:  0.1250 energy: -0.715150127043\\n',\n",
       " ' 19 steps, tau:    4.e-03, sigma:  0.1250 energy: -0.715155340348\\n',\n",
       " ' 20 steps, tau:    4.e-03, sigma:  0.0625 energy: -0.715164793386\\n',\n",
       " ' 21 steps, tau:    0.0156, sigma:  0.0312 energy: -0.715180157020\\n',\n",
       " ' 22 steps, tau:    0     , sigma:  0.0312 energy: -0.715180157020\\n',\n",
       " ' 23 steps, tau:    0     , sigma:  0.0156 energy: -0.715180157020\\n',\n",
       " ' 24 steps, tau:    0     , sigma:  8.e-03 energy: -0.715180157020\\n',\n",
       " ' 25 steps, tau:    0     , sigma:  4.e-03 energy: -0.715180157020\\n',\n",
       " ' 26 steps, tau:    2.e-04, sigma:  2.e-03 energy: -0.715180379475\\n',\n",
       " ' 27 steps, tau:    0     , sigma:  1.e-03 energy: -0.715180379475\\n',\n",
       " ' 28 steps, tau:    0     , sigma:  5.e-04 energy: -0.715180379475\\n',\n",
       " ' 29 steps, tau:    0     , sigma:  2.e-04 energy: -0.715180379475\\n',\n",
       " ' 30 steps, tau:    0     , sigma:  1.e-04 energy: -0.715180379475\\n',\n",
       " 'Descent needed 30 step(s).\\n',\n",
       " '\\n',\n",
       " '--------------------------------------------------------\\n',\n",
       " 'Registration on level 7 started\\n',\n",
       " '--------------------------------------------------------\\n',\n",
       " '\\n',\n",
       " 'Initial energy: -0.700917862486\\n',\n",
       " '  1 steps, tau:   16.0000, sigma:  1.0000 energy: -0.701950995159\\n',\n",
       " '  2 steps, tau:   32.0000, sigma:  1.0000 energy: -0.702190050552\\n',\n",
       " '  3 steps, tau:    0     , sigma:  1.0000 energy: -0.702190050552\\n',\n",
       " '  4 steps, tau:    0     , sigma:  0.5000 energy: -0.702190050552\\n',\n",
       " '  5 steps, tau:    2.e-09, sigma:  0.2500 energy: -0.702190050552\\n',\n",
       " '  6 steps, tau:    0.0625, sigma:  0.1250 energy: -0.702193226037\\n',\n",
       " '  7 steps, tau:    0.0312, sigma:  0.0625 energy: -0.702197005037\\n',\n",
       " '  8 steps, tau:    8.e-03, sigma:  0.0312 energy: -0.702198885130\\n',\n",
       " '  9 steps, tau:    4.e-03, sigma:  0.0156 energy: -0.702200600411\\n',\n",
       " ' 10 steps, tau:    2.e-03, sigma:  8.e-03 energy: -0.702201532321\\n',\n",
       " ' 11 steps, tau:    4.e-03, sigma:  4.e-03 energy: -0.702201839791\\n',\n",
       " ' 12 steps, tau:    2.e-03, sigma:  2.e-03 energy: -0.702201959020\\n',\n",
       " ' 13 steps, tau:    0     , sigma:  1.e-03 energy: -0.702201959020\\n',\n",
       " ' 14 steps, tau:    0     , sigma:  5.e-04 energy: -0.702201959020\\n',\n",
       " ' 15 steps, tau:    0     , sigma:  2.e-04 energy: -0.702201959020\\n',\n",
       " ' 16 steps, tau:    0     , sigma:  1.e-04 energy: -0.702201959020\\n',\n",
       " 'Descent needed 16 step(s).\\n',\n",
       " '\\n',\n",
       " '--------------------------------------------------------\\n',\n",
       " 'Registration on level 8 started\\n',\n",
       " '--------------------------------------------------------\\n',\n",
       " '\\n',\n",
       " 'Initial energy: -0.666691217496\\n',\n",
       " '  1 steps, tau:   32.0000, sigma:  1.0000 energy: -0.666856472186\\n',\n",
       " '  2 steps, tau:   16.0000, sigma:  1.0000 energy: -0.666905008027\\n',\n",
       " '  3 steps, tau:    1.0000, sigma:  1.0000 energy: -0.666906484460\\n',\n",
       " '  4 steps, tau:    4.0000, sigma:  0.5000 energy: -0.666933225332\\n',\n",
       " '  5 steps, tau:    2.0000, sigma:  0.5000 energy: -0.666943648618\\n',\n",
       " '  6 steps, tau:    2.0000, sigma:  0.5000 energy: -0.666955005954\\n',\n",
       " '  7 steps, tau:    1.0000, sigma:  0.5000 energy: -0.666960381771\\n',\n",
       " '  8 steps, tau:    0.1250, sigma:  0.2500 energy: -0.666964650014\\n',\n",
       " '  9 steps, tau:    0.0156, sigma:  0.1250 energy: -0.666967157773\\n',\n",
       " ' 10 steps, tau:    4.e-03, sigma:  0.0625 energy: -0.666969615956\\n',\n",
       " ' 11 steps, tau:    0.1250, sigma:  0.0312 energy: -0.666991576132\\n',\n",
       " ' 12 steps, tau:    0.0625, sigma:  0.0312 energy: -0.666995164413\\n',\n",
       " ' 13 steps, tau:    0.0156, sigma:  0.0156 energy: -0.666995984916\\n',\n",
       " ' 14 steps, tau:    8.e-03, sigma:  8.e-03 energy: -0.666996448590\\n',\n",
       " ' 15 steps, tau:    5.e-04, sigma:  4.e-03 energy: -0.666996501078\\n',\n",
       " ' 16 steps, tau:    5.e-04, sigma:  2.e-03 energy: -0.666996674574\\n',\n",
       " ' 17 steps, tau:    5.e-04, sigma:  1.e-03 energy: -0.666996832924\\n',\n",
       " ' 18 steps, tau:    1.e-03, sigma:  5.e-04 energy: -0.666996947960\\n',\n",
       " ' 19 steps, tau:    1.e-04, sigma:  2.e-04 energy: -0.666996959805\\n',\n",
       " ' 20 steps, tau:    0     , sigma:  1.e-04 energy: -0.666996959805\\n',\n",
       " 'Descent needed 20 step(s).\\n',\n",
       " 'Created directory results/stage1/2-r/\\n',\n",
       " '\\n',\n",
       " '--------------------------------------------------------\\n',\n",
       " 'Registration on level 7 started\\n',\n",
       " '--------------------------------------------------------\\n',\n",
       " '\\n',\n",
       " 'Initial energy: -0.523180328091\\n',\n",
       " '  1 steps, tau:   16.0000, sigma:  1.0000 energy: -0.527622184246\\n',\n",
       " '  2 steps, tau:    8.0000, sigma:  1.0000 energy: -0.528963370940\\n',\n",
       " '  3 steps, tau:    0.2500, sigma:  1.0000 energy: -0.528980844048\\n',\n",
       " '  4 steps, tau:    0     , sigma:  1.0000 energy: -0.528980844048\\n',\n",
       " '  5 steps, tau:    0     , sigma:  0.5000 energy: -0.528980844048\\n',\n",
       " '  6 steps, tau:    0.5000, sigma:  0.2500 energy: -0.529046913005\\n',\n",
       " '  7 steps, tau:    0.0625, sigma:  0.2500 energy: -0.529059537166\\n',\n",
       " '  8 steps, tau:    0.0156, sigma:  0.2500 energy: -0.529063985953\\n',\n",
       " '  9 steps, tau:    0.0156, sigma:  0.1250 energy: -0.529077411588\\n',\n",
       " ' 10 steps, tau:    0.0156, sigma:  0.1250 energy: -0.529092469198\\n',\n",
       " ' 11 steps, tau:    0.2500, sigma:  0.1250 energy: -0.529135972503\\n',\n",
       " ' 12 steps, tau:    0.0156, sigma:  0.1250 energy: -0.529139758281\\n',\n",
       " ' 13 steps, tau:    4.e-03, sigma:  0.0625 energy: -0.529142303428\\n',\n",
       " ' 14 steps, tau:    1.e-03, sigma:  0.0312 energy: -0.529143693459\\n',\n",
       " ' 15 steps, tau:    5.e-04, sigma:  0.0156 energy: -0.529145244176\\n',\n",
       " ' 16 steps, tau:    1.e-04, sigma:  8.e-03 energy: -0.529146149972\\n',\n",
       " ' 17 steps, tau:    1.e-04, sigma:  4.e-03 energy: -0.529147913336\\n',\n",
       " ' 18 steps, tau:    6.e-05, sigma:  2.e-03 energy: -0.529148941693\\n',\n",
       " ' 19 steps, tau:    3.e-05, sigma:  1.e-03 energy: -0.529149449185\\n',\n",
       " ' 20 steps, tau:    3.e-05, sigma:  5.e-04 energy: -0.529149941350\\n',\n",
       " ' 21 steps, tau:    1.e-03, sigma:  2.e-04 energy: -0.529151036826\\n',\n",
       " ' 22 steps, tau:    0     , sigma:  1.e-04 energy: -0.529151036826\\n',\n",
       " 'Descent needed 22 step(s).\\n',\n",
       " '\\n',\n",
       " '--------------------------------------------------------\\n',\n",
       " 'Registration on level 8 started\\n',\n",
       " '--------------------------------------------------------\\n',\n",
       " '\\n',\n",
       " 'Initial energy: -0.497652383446\\n',\n",
       " '  1 steps, tau:   32.0000, sigma:  1.0000 energy: -0.498830330018\\n',\n",
       " '  2 steps, tau:  128.0000, sigma:  1.0000 energy: -0.499833384029\\n',\n",
       " '  3 steps, tau:    7.e-09, sigma:  1.0000 energy: -0.499833384029\\n',\n",
       " '  4 steps, tau:    4.e-09, sigma:  0.5000 energy: -0.499833384029\\n',\n",
       " '  5 steps, tau:    1.0000, sigma:  0.2500 energy: -0.499861196582\\n',\n",
       " '  6 steps, tau:    0.5000, sigma:  0.2500 energy: -0.499877506444\\n',\n",
       " '  7 steps, tau:    0.5000, sigma:  0.2500 energy: -0.499894879173\\n',\n",
       " '  8 steps, tau:    0.2500, sigma:  0.2500 energy: -0.499902980026\\n',\n",
       " '  9 steps, tau:    0.0312, sigma:  0.1250 energy: -0.499905254512\\n',\n",
       " ' 10 steps, tau:    0.0156, sigma:  0.0625 energy: -0.499908309301\\n',\n",
       " ' 11 steps, tau:    4.e-03, sigma:  0.0312 energy: -0.499908710265\\n',\n",
       " ' 12 steps, tau:    2.e-03, sigma:  0.0156 energy: -0.499909746149\\n',\n",
       " ' 13 steps, tau:    1.e-03, sigma:  8.e-03 energy: -0.499911680489\\n',\n",
       " ' 14 steps, tau:    2.e-04, sigma:  4.e-03 energy: -0.499913039047\\n',\n",
       " ' 15 steps, tau:    1.e-04, sigma:  2.e-03 energy: -0.499914342241\\n',\n",
       " ' 16 steps, tau:    1.e-04, sigma:  1.e-03 energy: -0.499915586028\\n',\n",
       " ' 17 steps, tau:    1.e-04, sigma:  5.e-04 energy: -0.499916252664\\n',\n",
       " ' 18 steps, tau:    1.e-04, sigma:  2.e-04 energy: -0.499916664594\\n',\n",
       " ' 19 steps, tau:    2.e-04, sigma:  1.e-04 energy: -0.499917210988\\n',\n",
       " 'Descent needed 19 step(s).\\n',\n",
       " 'Using templates images ---------------------------------------\\n',\n",
       " 'testImg_1_STEM.tif\\n',\n",
       " 'testImg_2_STEM.tif\\n',\n",
       " 'testImg_3_STEM.tif\\n',\n",
       " '--------------------------------------------------------------\\n',\n",
       " 'Initial energy:  0.002634862631\\n',\n",
       " '  1 steps, tau:    2.e+04 energy:  0.000708523823 DEnorm: 0.000434817\\n',\n",
       " '  2 steps, tau:    2.e+04 energy:  0.000577980429 DEnorm: 0.000108546\\n',\n",
       " '  3 steps, tau:    2.e+04 energy:  0.000576123201 DEnorm: 1.33923e-05\\n',\n",
       " '  4 steps, tau:    2.e+04 energy:  0.000575896059 DEnorm: 4.72174e-06\\n',\n",
       " '  5 steps, tau:    3.e+04 energy:  0.000575849812 DEnorm: 2.09249e-06\\n',\n",
       " '  6 steps, tau:    7.e+04 energy:  0.000575835301 DEnorm: 1.21323e-06\\n',\n",
       " '  7 steps, tau:    3.e+04 energy:  0.000575831101 DEnorm: 9.25076e-07\\n',\n",
       " 'Descent needed 7 step(s).\\n',\n",
       " 'Using templates images ---------------------------------------\\n',\n",
       " 'testImg_1_STEM.tif\\n',\n",
       " 'testImg_2_STEM.tif\\n',\n",
       " 'testImg_3_STEM.tif\\n',\n",
       " '--------------------------------------------------------------\\n',\n",
       " 'reading reference image from: results/stage1/median.q2bz\\n',\n",
       " 'reading template image from: testImg_0_STEM.tif\\n',\n",
       " 'Created directory results/stage2/\\n',\n",
       " 'Using templates images ---------------------------------------\\n',\n",
       " 'testImg_0_STEM.tif\\n',\n",
       " 'testImg_1_STEM.tif\\n',\n",
       " 'testImg_2_STEM.tif\\n',\n",
       " 'testImg_3_STEM.tif\\n',\n",
       " '--------------------------------------------------------------\\n',\n",
       " 'Created directory results/stage2/0/\\n',\n",
       " '\\n',\n",
       " '--------------------------------------------------------\\n',\n",
       " 'Registration on level 6 started\\n',\n",
       " '--------------------------------------------------------\\n',\n",
       " '\\n',\n",
       " 'Initial energy: -0.910046665140\\n',\n",
       " '  1 steps, tau:    4.0000, sigma:  1.0000 energy: -0.937017611114\\n',\n",
       " '  2 steps, tau:    2.0000, sigma:  1.0000 energy: -0.945395791150\\n',\n",
       " '  3 steps, tau:    4.0000, sigma:  1.0000 energy: -0.947585360113\\n',\n",
       " '  4 steps, tau:    0.5000, sigma:  1.0000 energy: -0.947844379657\\n',\n",
       " '  5 steps, tau:    0.5000, sigma:  1.0000 energy: -0.948126611186\\n',\n",
       " '  6 steps, tau:    1.0000, sigma:  1.0000 energy: -0.948400875533\\n',\n",
       " '  7 steps, tau:   16.0000, sigma:  1.0000 energy: -0.949143015844\\n',\n",
       " '  8 steps, tau:    0.5000, sigma:  1.0000 energy: -0.949177599140\\n',\n",
       " '  9 steps, tau:    0.5000, sigma:  1.0000 energy: -0.949222360982\\n',\n",
       " ' 10 steps, tau:    1.0000, sigma:  1.0000 energy: -0.949311952551\\n',\n",
       " ' 11 steps, tau:    4.0000, sigma:  1.0000 energy: -0.949564268869\\n',\n",
       " ' 12 steps, tau:    0.5000, sigma:  1.0000 energy: -0.949587170097\\n',\n",
       " ' 13 steps, tau:    0.1250, sigma:  1.0000 energy: -0.949592262240\\n',\n",
       " ' 14 steps, tau:    0.0625, sigma:  0.5000 energy: -0.949599212211\\n',\n",
       " ' 15 steps, tau:    0.0625, sigma:  0.2500 energy: -0.949620647877\\n',\n",
       " ' 16 steps, tau:    0.0625, sigma:  0.2500 energy: -0.949639468378\\n',\n",
       " ' 17 steps, tau:    0.0625, sigma:  0.2500 energy: -0.949657768717\\n',\n",
       " ' 18 steps, tau:    0.0625, sigma:  0.2500 energy: -0.949675601562\\n',\n",
       " ' 19 steps, tau:    0.1250, sigma:  0.2500 energy: -0.949709211158\\n',\n",
       " ' 20 steps, tau:    0.1250, sigma:  0.2500 energy: -0.949735717587\\n',\n",
       " ' 21 steps, tau:    2.0000, sigma:  0.2500 energy: -0.949836506874\\n',\n",
       " ' 22 steps, tau:    0.0625, sigma:  0.2500 energy: -0.949838617401\\n',\n",
       " ' 23 steps, tau:    8.e-03, sigma:  0.1250 energy: -0.949841254020\\n',\n",
       " ' 24 steps, tau:    2.e-03, sigma:  0.0625 energy: -0.949845424239\\n',\n",
       " ' 25 steps, tau:    5.e-04, sigma:  0.0312 energy: -0.949849796731\\n',\n",
       " ' 26 steps, tau:    1.e-04, sigma:  0.0156 energy: -0.949853070272\\n',\n",
       " ' 27 steps, tau:    1.e-04, sigma:  8.e-03 energy: -0.949859646564\\n',\n",
       " ' 28 steps, tau:    3.e-05, sigma:  4.e-03 energy: -0.949861681403\\n',\n",
       " ' 29 steps, tau:    3.e-05, sigma:  2.e-03 energy: -0.949863900777\\n',\n",
       " ' 30 steps, tau:    3.e-05, sigma:  1.e-03 energy: -0.949866109827\\n',\n",
       " ' 31 steps, tau:    0.0156, sigma:  5.e-04 energy: -0.949906129025\\n',\n",
       " ' 32 steps, tau:    8.e-03, sigma:  5.e-04 energy: -0.949912597950\\n',\n",
       " ' 33 steps, tau:    0     , sigma:  2.e-04 energy: -0.949912597950\\n',\n",
       " ' 34 steps, tau:    0     , sigma:  1.e-04 energy: -0.949912597950\\n',\n",
       " 'Descent needed 34 step(s).\\n',\n",
       " '\\n',\n",
       " '--------------------------------------------------------\\n',\n",
       " 'Registration on level 7 started\\n',\n",
       " '--------------------------------------------------------\\n',\n",
       " '\\n',\n",
       " 'Initial energy: -0.936966361675\\n',\n",
       " '  1 steps, tau:    2.0000, sigma:  1.0000 energy: -0.936992837811\\n',\n",
       " '  2 steps, tau:    0.2500, sigma:  1.0000 energy: -0.936995905299\\n',\n",
       " '  3 steps, tau:    0.5000, sigma:  0.5000 energy: -0.937007936964\\n',\n",
       " '  4 steps, tau:    0.2500, sigma:  0.5000 energy: -0.937014407380\\n',\n",
       " '  5 steps, tau:    1.0000, sigma:  0.2500 energy: -0.937075044665\\n',\n",
       " '  6 steps, tau:    2.0000, sigma:  0.2500 energy: -0.937164615582\\n',\n",
       " '  7 steps, tau:    2.0000, sigma:  0.2500 energy: -0.937270545892\\n',\n",
       " '  8 steps, tau:    0.5000, sigma:  0.2500 energy: -0.937314075184\\n',\n",
       " '  9 steps, tau:    0.2500, sigma:  0.2500 energy: -0.937337019880\\n',\n",
       " ' 10 steps, tau:    0.1250, sigma:  0.2500 energy: -0.937349786551\\n',\n",
       " ' 11 steps, tau:    8.0000, sigma:  0.2500 energy: -0.937483028467\\n',\n",
       " ' 12 steps, tau:    4.0000, sigma:  0.2500 energy: -0.937493062950\\n',\n",
       " ' 13 steps, tau:    0.5000, sigma:  0.2500 energy: -0.937493962265\\n',\n",
       " ' 14 steps, tau:    0.5000, sigma:  0.1250 energy: -0.937499016876\\n',\n",
       " ' 15 steps, tau:    0.0625, sigma:  0.0625 energy: -0.937501821550\\n',\n",
       " ' 16 steps, tau:    8.e-03, sigma:  0.0312 energy: -0.937503401379\\n',\n",
       " ' 17 steps, tau:    1.e-03, sigma:  0.0156 energy: -0.937504223649\\n',\n",
       " ' 18 steps, tau:    5.e-04, sigma:  8.e-03 energy: -0.937505632791\\n',\n",
       " ' 19 steps, tau:    1.e-04, sigma:  4.e-03 energy: -0.937506295589\\n',\n",
       " ' 20 steps, tau:    6.e-05, sigma:  2.e-03 energy: -0.937506745844\\n',\n",
       " ' 21 steps, tau:    0.0312, sigma:  1.e-03 energy: -0.937516030336\\n',\n",
       " ' 22 steps, tau:    0     , sigma:  5.e-04 energy: -0.937516030336\\n',\n",
       " ' 23 steps, tau:    0     , sigma:  2.e-04 energy: -0.937516030336\\n',\n",
       " ' 24 steps, tau:    0     , sigma:  1.e-04 energy: -0.937516030336\\n',\n",
       " 'Descent needed 24 step(s).\\n',\n",
       " '\\n',\n",
       " '--------------------------------------------------------\\n',\n",
       " 'Registration on level 8 started\\n',\n",
       " '--------------------------------------------------------\\n',\n",
       " '\\n',\n",
       " 'Initial energy: -0.911455175565\\n',\n",
       " '  1 steps, tau:   16.0000, sigma:  1.0000 energy: -0.911644562392\\n',\n",
       " '  2 steps, tau:   64.0000, sigma:  1.0000 energy: -0.911861744811\\n',\n",
       " '  3 steps, tau:    4.0000, sigma:  1.0000 energy: -0.911915224468\\n',\n",
       " '  4 steps, tau:    8.0000, sigma:  1.0000 energy: -0.912042536046\\n',\n",
       " '  5 steps, tau:   16.0000, sigma:  1.0000 energy: -0.912114941371\\n',\n",
       " '  6 steps, tau:  128.0000, sigma:  1.0000 energy: -0.912316735872\\n',\n",
       " '  7 steps, tau:    4.0000, sigma:  1.0000 energy: -0.912400075266\\n',\n",
       " '  8 steps, tau:    0.5000, sigma:  1.0000 energy: -0.912419602160\\n',\n",
       " '  9 steps, tau:    0.5000, sigma:  1.0000 energy: -0.912432296827\\n',\n",
       " ' 10 steps, tau:    0.1250, sigma:  1.0000 energy: -0.912434272281\\n',\n",
       " ' 11 steps, tau:   16.0000, sigma:  0.5000 energy: -0.912735689198\\n',\n",
       " ' 12 steps, tau:   64.0000, sigma:  0.5000 energy: -0.912907080601\\n',\n",
       " ' 13 steps, tau:   16.0000, sigma:  0.5000 energy: -0.913007814958\\n',\n",
       " ' 14 steps, tau:    8.0000, sigma:  0.5000 energy: -0.913078692917\\n',\n",
       " ' 15 steps, tau:    8.0000, sigma:  0.5000 energy: -0.913136902479\\n',\n",
       " ' 16 steps, tau:    4.0000, sigma:  0.5000 energy: -0.913161616524\\n',\n",
       " ' 17 steps, tau:    2.0000, sigma:  0.5000 energy: -0.913174597027\\n',\n",
       " ' 18 steps, tau:    2.0000, sigma:  0.5000 energy: -0.913187871590\\n',\n",
       " ' 19 steps, tau:    1.0000, sigma:  0.5000 energy: -0.913194038007\\n',\n",
       " ' 20 steps, tau:    0.5000, sigma:  0.2500 energy: -0.913202786179\\n',\n",
       " ' 21 steps, tau:    4.0000, sigma:  0.1250 energy: -0.913277600969\\n',\n",
       " ' 22 steps, tau:    2.0000, sigma:  0.1250 energy: -0.913305036117\\n',\n",
       " ' 23 steps, tau:    1.0000, sigma:  0.1250 energy: -0.913315153176\\n',\n",
       " ' 24 steps, tau:    0.1250, sigma:  0.1250 energy: -0.913316382138\\n',\n",
       " ' 25 steps, tau:    0     , sigma:  0.0625 energy: -0.913316382138\\n',\n",
       " ' 26 steps, tau:    0.2500, sigma:  0.0312 energy: -0.913322779149\\n',\n",
       " ' 27 steps, tau:    0.0156, sigma:  0.0156 energy: -0.913324464235\\n',\n",
       " ' 28 steps, tau:    0.0156, sigma:  8.e-03 energy: -0.913329879628\\n',\n",
       " ' 29 steps, tau:    8.e-03, sigma:  4.e-03 energy: -0.913334859206\\n',\n",
       " ' 30 steps, tau:    4.e-03, sigma:  2.e-03 energy: -0.913337901379\\n',\n",
       " ' 31 steps, tau:    0.0625, sigma:  1.e-03 energy: -0.913345294072\\n',\n",
       " ' 32 steps, tau:    0     , sigma:  5.e-04 energy: -0.913345294072\\n',\n",
       " ' 33 steps, tau:    0     , sigma:  2.e-04 energy: -0.913345294072\\n',\n",
       " ' 34 steps, tau:    0     , sigma:  1.e-04 energy: -0.913345294072\\n',\n",
       " 'Descent needed 34 step(s).\\n',\n",
       " 'Created directory results/stage2/1-r/\\n',\n",
       " '\\n',\n",
       " '--------------------------------------------------------\\n',\n",
       " 'Registration on level 7 started\\n',\n",
       " '--------------------------------------------------------\\n',\n",
       " '\\n',\n",
       " 'Initial energy: -0.936959079530\\n',\n",
       " '  1 steps, tau:   16.0000, sigma:  1.0000 energy: -0.965854264156\\n',\n",
       " '  2 steps, tau:   16.0000, sigma:  1.0000 energy: -0.974307374015\\n',\n",
       " '  3 steps, tau:   16.0000, sigma:  1.0000 energy: -0.975238249150\\n',\n",
       " '  4 steps, tau:    8.0000, sigma:  1.0000 energy: -0.975639121196\\n',\n",
       " '  5 steps, tau:    2.0000, sigma:  1.0000 energy: -0.975844279638\\n',\n",
       " '  6 steps, tau:    0.2500, sigma:  1.0000 energy: -0.975875061691\\n',\n",
       " '  7 steps, tau:    0     , sigma:  1.0000 energy: -0.975875061691\\n',\n",
       " '  8 steps, tau:    2.0000, sigma:  0.5000 energy: -0.976182373008\\n',\n",
       " '  9 steps, tau:    1.0000, sigma:  0.5000 energy: -0.976355666870\\n',\n",
       " ' 10 steps, tau:    4.0000, sigma:  0.5000 energy: -0.977027090137\\n',\n",
       " ' 11 steps, tau:   16.0000, sigma:  0.5000 energy: -0.977525492105\\n',\n",
       " ' 12 steps, tau:    8.0000, sigma:  0.5000 energy: -0.978064399856\\n',\n",
       " ' 13 steps, tau:    1.0000, sigma:  0.5000 energy: -0.978181911947\\n',\n",
       " ' 14 steps, tau:    0.5000, sigma:  0.5000 energy: -0.978239977111\\n',\n",
       " ' 15 steps, tau:    1.0000, sigma:  0.5000 energy: -0.978309505666\\n',\n",
       " ' 16 steps, tau:    1.0000, sigma:  0.5000 energy: -0.978323884541\\n',\n",
       " ' 17 steps, tau:    2.0000, sigma:  0.5000 energy: -0.978338621167\\n',\n",
       " ' 18 steps, tau:    1.0000, sigma:  0.5000 energy: -0.978349173360\\n',\n",
       " ' 19 steps, tau:    0.5000, sigma:  0.5000 energy: -0.978359709001\\n',\n",
       " ' 20 steps, tau:    0.2500, sigma:  0.5000 energy: -0.978367284778\\n',\n",
       " ' 21 steps, tau:    4.0000, sigma:  0.2500 energy: -0.978547024240\\n',\n",
       " ' 22 steps, tau:    4.0000, sigma:  0.2500 energy: -0.978666065772\\n',\n",
       " ' 23 steps, tau:    4.0000, sigma:  0.2500 energy: -0.978714543312\\n',\n",
       " ' 24 steps, tau:    8.0000, sigma:  0.2500 energy: -0.978744972831\\n',\n",
       " ' 25 steps, tau:    0     , sigma:  0.2500 energy: -0.978744972831\\n',\n",
       " ' 26 steps, tau:    0     , sigma:  0.1250 energy: -0.978744972831\\n',\n",
       " ' 27 steps, tau:    0     , sigma:  0.0625 energy: -0.978744972831\\n',\n",
       " ' 28 steps, tau:    0     , sigma:  0.0312 energy: -0.978744972831\\n',\n",
       " ' 29 steps, tau:    0.0312, sigma:  0.0156 energy: -0.978746083002\\n',\n",
       " ' 30 steps, tau:    8.e-03, sigma:  8.e-03 energy: -0.978747296629\\n',\n",
       " ' 31 steps, tau:    0.0156, sigma:  4.e-03 energy: -0.978749385260\\n',\n",
       " ' 32 steps, tau:    8.e-03, sigma:  2.e-03 energy: -0.978750259183\\n',\n",
       " ' 33 steps, tau:    5.e-04, sigma:  1.e-03 energy: -0.978750285266\\n',\n",
       " ' 34 steps, tau:    1.e-04, sigma:  5.e-04 energy: -0.978750294368\\n',\n",
       " ' 35 steps, tau:    2.e-04, sigma:  2.e-04 energy: -0.978750317369\\n',\n",
       " ' 36 steps, tau:    1.e-04, sigma:  1.e-04 energy: -0.978750330923\\n',\n",
       " 'Descent needed 36 step(s).\\n',\n",
       " '\\n',\n",
       " '--------------------------------------------------------\\n',\n",
       " 'Registration on level 8 started\\n',\n",
       " '--------------------------------------------------------\\n',\n",
       " '\\n',\n",
       " 'Initial energy: -0.962785728876\\n',\n",
       " '  1 steps, tau:    8.0000, sigma:  1.0000 energy: -0.962976939072\\n',\n",
       " '  2 steps, tau:    0     , sigma:  1.0000 energy: -0.962976939072\\n',\n",
       " '  3 steps, tau:    0     , sigma:  0.5000 energy: -0.962976939072\\n',\n",
       " '  4 steps, tau:    0     , sigma:  0.2500 energy: -0.962976939072\\n',\n",
       " '  5 steps, tau:    0     , sigma:  0.1250 energy: -0.962976939072\\n',\n",
       " '  6 steps, tau:    0.0312, sigma:  0.0625 energy: -0.962983982728\\n',\n",
       " '  7 steps, tau:    0.1250, sigma:  0.0312 energy: -0.963093105743\\n',\n",
       " '  8 steps, tau:    0.0312, sigma:  0.0312 energy: -0.963125280187\\n',\n",
       " '  9 steps, tau:    0.0156, sigma:  0.0312 energy: -0.963145163766\\n',\n",
       " ' 10 steps, tau:    0.0156, sigma:  0.0312 energy: -0.963168309600\\n',\n",
       " ' 11 steps, tau:    0.1250, sigma:  0.0312 energy: -0.963205817369\\n',\n",
       " ' 12 steps, tau:    4.e-03, sigma:  0.0312 energy: -0.963207877602\\n',\n",
       " ' 13 steps, tau:    0.0312, sigma:  0.0156 energy: -0.963256245787\\n',\n",
       " ' 14 steps, tau:    0.0156, sigma:  0.0156 energy: -0.963281580304\\n',\n",
       " ' 15 steps, tau:    4.e-03, sigma:  0.0156 energy: -0.963288491056\\n',\n",
       " ' 16 steps, tau:    4.e-03, sigma:  8.e-03 energy: -0.963304688101\\n',\n",
       " ' 17 steps, tau:    4.e-03, sigma:  8.e-03 energy: -0.963320967789\\n',\n",
       " ' 18 steps, tau:    4.e-03, sigma:  8.e-03 energy: -0.963336022483\\n',\n",
       " ' 19 steps, tau:    2.e-03, sigma:  8.e-03 energy: -0.963342922079\\n',\n",
       " ' 20 steps, tau:    1.e-03, sigma:  4.e-03 energy: -0.963349323782\\n',\n",
       " ' 21 steps, tau:    0.0312, sigma:  2.e-03 energy: -0.963383389639\\n',\n",
       " ' 22 steps, tau:    0     , sigma:  2.e-03 energy: -0.963383389639\\n',\n",
       " ' 23 steps, tau:    0     , sigma:  1.e-03 energy: -0.963383389639\\n',\n",
       " ' 24 steps, tau:    0     , sigma:  5.e-04 energy: -0.963383389639\\n',\n",
       " ' 25 steps, tau:    0     , sigma:  2.e-04 energy: -0.963383389639\\n',\n",
       " ' 26 steps, tau:    0     , sigma:  1.e-04 energy: -0.963383389639\\n',\n",
       " 'Descent needed 26 step(s).\\n',\n",
       " 'Created directory results/stage2/2-r/\\n',\n",
       " '\\n',\n",
       " '--------------------------------------------------------\\n',\n",
       " 'Registration on level 7 started\\n',\n",
       " '--------------------------------------------------------\\n',\n",
       " '\\n',\n",
       " 'Initial energy: -0.956732250790\\n',\n",
       " '  1 steps, tau:   16.0000, sigma:  1.0000 energy: -0.962591969526\\n',\n",
       " '  2 steps, tau:    8.0000, sigma:  1.0000 energy: -0.964236390210\\n',\n",
       " '  3 steps, tau:    4.0000, sigma:  1.0000 energy: -0.964456123901\\n',\n",
       " '  4 steps, tau:   16.0000, sigma:  1.0000 energy: -0.964737068787\\n',\n",
       " '  5 steps, tau:    1.0000, sigma:  1.0000 energy: -0.964777733384\\n',\n",
       " '  6 steps, tau:    2.0000, sigma:  1.0000 energy: -0.964907967390\\n',\n",
       " '  7 steps, tau:    1.0000, sigma:  1.0000 energy: -0.965012283465\\n',\n",
       " '  8 steps, tau:    1.0000, sigma:  1.0000 energy: -0.965137227541\\n',\n",
       " '  9 steps, tau:    1.0000, sigma:  1.0000 energy: -0.965254677924\\n',\n",
       " ' 10 steps, tau:    1.0000, sigma:  1.0000 energy: -0.965350735354\\n',\n",
       " ' 11 steps, tau:    8.0000, sigma:  1.0000 energy: -0.965678083092\\n',\n",
       " ' 12 steps, tau:   32.0000, sigma:  1.0000 energy: -0.966066259454\\n',\n",
       " ' 13 steps, tau:   16.0000, sigma:  1.0000 energy: -0.966117148036\\n',\n",
       " ' 14 steps, tau:   16.0000, sigma:  1.0000 energy: -0.966307644449\\n',\n",
       " ' 15 steps, tau:    8.0000, sigma:  1.0000 energy: -0.966362173832\\n',\n",
       " ' 16 steps, tau:    0     , sigma:  1.0000 energy: -0.966362173832\\n',\n",
       " ' 17 steps, tau:    4.0000, sigma:  0.5000 energy: -0.966378964474\\n',\n",
       " ' 18 steps, tau:    4.0000, sigma:  0.5000 energy: -0.966399031505\\n',\n",
       " ' 19 steps, tau:    8.0000, sigma:  0.5000 energy: -0.966438941151\\n',\n",
       " ' 20 steps, tau:    8.0000, sigma:  0.5000 energy: -0.966486593399\\n',\n",
       " ' 21 steps, tau:   32.0000, sigma:  0.5000 energy: -0.966538912509\\n',\n",
       " ' 22 steps, tau:    2.0000, sigma:  0.5000 energy: -0.966554686454\\n',\n",
       " ' 23 steps, tau:    0.2500, sigma:  0.5000 energy: -0.966556833419\\n',\n",
       " ' 24 steps, tau:    0     , sigma:  0.2500 energy: -0.966556833419\\n',\n",
       " ' 25 steps, tau:    0     , sigma:  0.1250 energy: -0.966556833419\\n',\n",
       " ' 26 steps, tau:    0     , sigma:  0.0625 energy: -0.966556833419\\n',\n",
       " ' 27 steps, tau:    0.0625, sigma:  0.0312 energy: -0.966560230748\\n',\n",
       " ' 28 steps, tau:    0.0156, sigma:  0.0156 energy: -0.966564092747\\n',\n",
       " ' 29 steps, tau:    8.e-03, sigma:  8.e-03 energy: -0.966568656326\\n',\n",
       " ' 30 steps, tau:    2.e-03, sigma:  4.e-03 energy: -0.966570043952\\n',\n",
       " ' 31 steps, tau:    0.0156, sigma:  2.e-03 energy: -0.966572900446\\n',\n",
       " ' 32 steps, tau:    2.e-03, sigma:  1.e-03 energy: -0.966573090746\\n',\n",
       " ' 33 steps, tau:    0     , sigma:  5.e-04 energy: -0.966573090746\\n',\n",
       " ' 34 steps, tau:    0     , sigma:  2.e-04 energy: -0.966573090746\\n',\n",
       " ' 35 steps, tau:    0     , sigma:  1.e-04 energy: -0.966573090746\\n',\n",
       " 'Descent needed 35 step(s).\\n',\n",
       " '\\n',\n",
       " '--------------------------------------------------------\\n',\n",
       " 'Registration on level 8 started\\n',\n",
       " '--------------------------------------------------------\\n',\n",
       " '\\n',\n",
       " 'Initial energy: -0.945999795615\\n',\n",
       " '  1 steps, tau:    0     , sigma:  1.0000 energy: -0.945999795615\\n',\n",
       " '  2 steps, tau:    0     , sigma:  0.5000 energy: -0.945999795615\\n',\n",
       " '  3 steps, tau:    8.0000, sigma:  0.2500 energy: -0.946415186439\\n',\n",
       " '  4 steps, tau:    8.0000, sigma:  0.2500 energy: -0.946766459671\\n',\n",
       " '  5 steps, tau:    8.0000, sigma:  0.2500 energy: -0.947009546338\\n',\n",
       " '  6 steps, tau:    8.0000, sigma:  0.2500 energy: -0.947183942820\\n',\n",
       " '  7 steps, tau:   16.0000, sigma:  0.2500 energy: -0.947380265533\\n',\n",
       " '  8 steps, tau:    1.0000, sigma:  0.2500 energy: -0.947402303376\\n',\n",
       " '  9 steps, tau:    1.0000, sigma:  0.2500 energy: -0.947425080996\\n',\n",
       " ' 10 steps, tau:    1.0000, sigma:  0.2500 energy: -0.947442319744\\n',\n",
       " ' 11 steps, tau:   16.0000, sigma:  0.2500 energy: -0.947573777560\\n',\n",
       " ' 12 steps, tau:   16.0000, sigma:  0.2500 energy: -0.947678767134\\n',\n",
       " ' 13 steps, tau:    0     , sigma:  0.2500 energy: -0.947678767134\\n',\n",
       " ' 14 steps, tau:    0     , sigma:  0.1250 energy: -0.947678767134\\n',\n",
       " ' 15 steps, tau:    0     , sigma:  0.0625 energy: -0.947678767134\\n',\n",
       " ' 16 steps, tau:    0.1250, sigma:  0.0312 energy: -0.947682883326\\n',\n",
       " ' 17 steps, tau:    0.0312, sigma:  0.0156 energy: -0.947687346889\\n',\n",
       " ' 18 steps, tau:    0.0156, sigma:  8.e-03 energy: -0.947694316122\\n',\n",
       " ' 19 steps, tau:    8.e-03, sigma:  4.e-03 energy: -0.947701017751\\n',\n",
       " ' 20 steps, tau:    4.e-03, sigma:  2.e-03 energy: -0.947704641074\\n',\n",
       " ' 21 steps, tau:    0.0312, sigma:  1.e-03 energy: -0.947711382191\\n',\n",
       " ' 22 steps, tau:    0     , sigma:  5.e-04 energy: -0.947711382191\\n',\n",
       " ' 23 steps, tau:    0     , sigma:  2.e-04 energy: -0.947711382191\\n',\n",
       " ' 24 steps, tau:    0     , sigma:  1.e-04 energy: -0.947711382191\\n',\n",
       " 'Descent needed 24 step(s).\\n',\n",
       " 'Created directory results/stage2/3-r/\\n',\n",
       " '\\n',\n",
       " '--------------------------------------------------------\\n',\n",
       " 'Registration on level 7 started\\n',\n",
       " '--------------------------------------------------------\\n',\n",
       " '\\n',\n",
       " 'Initial energy: -0.882439182958\\n',\n",
       " '  1 steps, tau:   32.0000, sigma:  1.0000 energy: -0.942931249885\\n',\n",
       " '  2 steps, tau:    2.0000, sigma:  1.0000 energy: -0.945355249589\\n',\n",
       " '  3 steps, tau:    2.0000, sigma:  1.0000 energy: -0.946931165133\\n',\n",
       " '  4 steps, tau:    2.0000, sigma:  1.0000 energy: -0.947492596340\\n',\n",
       " '  5 steps, tau:    4.0000, sigma:  1.0000 energy: -0.948043249522\\n',\n",
       " '  6 steps, tau:   16.0000, sigma:  1.0000 energy: -0.949670335945\\n',\n",
       " '  7 steps, tau:    2.0000, sigma:  1.0000 energy: -0.949972126624\\n',\n",
       " '  8 steps, tau:    1.0000, sigma:  1.0000 energy: -0.950093206011\\n',\n",
       " '  9 steps, tau:    1.0000, sigma:  1.0000 energy: -0.950203156308\\n',\n",
       " ' 10 steps, tau:    2.0000, sigma:  1.0000 energy: -0.950372871915\\n',\n",
       " ' 11 steps, tau:   32.0000, sigma:  1.0000 energy: -0.951776778761\\n',\n",
       " ' 12 steps, tau:    8.0000, sigma:  1.0000 energy: -0.952457476000\\n',\n",
       " ' 13 steps, tau:    4.0000, sigma:  1.0000 energy: -0.952694339385\\n',\n",
       " ' 14 steps, tau:   16.0000, sigma:  1.0000 energy: -0.953195326301\\n',\n",
       " ' 15 steps, tau:    2.0000, sigma:  1.0000 energy: -0.953399637289\\n',\n",
       " ' 16 steps, tau:    1.0000, sigma:  1.0000 energy: -0.953535856087\\n',\n",
       " ' 17 steps, tau:    0.5000, sigma:  1.0000 energy: -0.953594235259\\n',\n",
       " ' 18 steps, tau:    0.1250, sigma:  1.0000 energy: -0.953611528886\\n',\n",
       " ' 19 steps, tau:    0.2500, sigma:  1.0000 energy: -0.953660777625\\n',\n",
       " ' 20 steps, tau:    0.2500, sigma:  1.0000 energy: -0.953712364057\\n',\n",
       " ' 21 steps, tau:    4.0000, sigma:  1.0000 energy: -0.953993968483\\n',\n",
       " ' 22 steps, tau:    4.0000, sigma:  1.0000 energy: -0.954046936449\\n',\n",
       " ' 23 steps, tau:   32.0000, sigma:  1.0000 energy: -0.954134957730\\n',\n",
       " ' 24 steps, tau:    1.0000, sigma:  1.0000 energy: -0.954163417607\\n',\n",
       " ' 25 steps, tau:    4.0000, sigma:  1.0000 energy: -0.954228006537\\n',\n",
       " ' 26 steps, tau:    8.0000, sigma:  1.0000 energy: -0.954263761351\\n',\n",
       " ' 27 steps, tau:   64.0000, sigma:  1.0000 energy: -0.954337023750\\n',\n",
       " ' 28 steps, tau:    0.5000, sigma:  1.0000 energy: -0.954338161794\\n',\n",
       " ' 29 steps, tau:    0.5000, sigma:  0.5000 energy: -0.954339866430\\n',\n",
       " ' 30 steps, tau:    0.2500, sigma:  0.2500 energy: -0.954341982756\\n',\n",
       " ' 31 steps, tau:    4.0000, sigma:  0.1250 energy: -0.954511134433\\n',\n",
       " ' 32 steps, tau:    4.0000, sigma:  0.1250 energy: -0.954562746785\\n',\n",
       " ' 33 steps, tau:    4.0000, sigma:  0.1250 energy: -0.954591000266\\n',\n",
       " ' 34 steps, tau:    4.0000, sigma:  0.1250 energy: -0.954604357639\\n',\n",
       " ' 35 steps, tau:    8.0000, sigma:  0.1250 energy: -0.954612144915\\n',\n",
       " ' 36 steps, tau:    2.0000, sigma:  0.0625 energy: -0.954613622319\\n',\n",
       " ' 37 steps, tau:    0     , sigma:  0.0312 energy: -0.954613622319\\n',\n",
       " ' 38 steps, tau:    0     , sigma:  0.0156 energy: -0.954613622319\\n',\n",
       " ' 39 steps, tau:    0.0312, sigma:  8.e-03 energy: -0.954614272292\\n',\n",
       " ' 40 steps, tau:    8.e-03, sigma:  4.e-03 energy: -0.954614656707\\n',\n",
       " ' 41 steps, tau:    0.0156, sigma:  2.e-03 energy: -0.954614942852\\n',\n",
       " ' 42 steps, tau:    2.e-03, sigma:  1.e-03 energy: -0.954614953253\\n',\n",
       " ' 43 steps, tau:    2.e-09, sigma:  5.e-04 energy: -0.954614953253\\n',\n",
       " ' 44 steps, tau:    0     , sigma:  2.e-04 energy: -0.954614953253\\n',\n",
       " ' 45 steps, tau:    0     , sigma:  1.e-04 energy: -0.954614953253\\n',\n",
       " 'Descent needed 45 step(s).\\n',\n",
       " '\\n',\n",
       " '--------------------------------------------------------\\n',\n",
       " 'Registration on level 8 started\\n',\n",
       " '--------------------------------------------------------\\n',\n",
       " '\\n',\n",
       " 'Initial energy: -0.932080544292\\n',\n",
       " '  1 steps, tau:   16.0000, sigma:  1.0000 energy: -0.932345103124\\n',\n",
       " '  2 steps, tau:  128.0000, sigma:  1.0000 energy: -0.932676910411\\n',\n",
       " '  3 steps, tau:   16.0000, sigma:  1.0000 energy: -0.932792667545\\n',\n",
       " '  4 steps, tau:    4.0000, sigma:  1.0000 energy: -0.932808328276\\n',\n",
       " '  5 steps, tau:    4.0000, sigma:  1.0000 energy: -0.932826633698\\n',\n",
       " '  6 steps, tau:    8.0000, sigma:  1.0000 energy: -0.932868211582\\n',\n",
       " '  7 steps, tau:    8.0000, sigma:  1.0000 energy: -0.932913902994\\n',\n",
       " '  8 steps, tau:    4.0000, sigma:  1.0000 energy: -0.932943765266\\n',\n",
       " '  9 steps, tau:    4.0000, sigma:  1.0000 energy: -0.932965341356\\n',\n",
       " ' 10 steps, tau:    4.0000, sigma:  1.0000 energy: -0.932976825702\\n',\n",
       " ' 11 steps, tau:   16.0000, sigma:  1.0000 energy: -0.932994376816\\n',\n",
       " ' 12 steps, tau:   32.0000, sigma:  1.0000 energy: -0.933050081299\\n',\n",
       " ' 13 steps, tau:   32.0000, sigma:  1.0000 energy: -0.933127669984\\n',\n",
       " ' 14 steps, tau:   16.0000, sigma:  1.0000 energy: -0.933145333791\\n',\n",
       " ' 15 steps, tau:   16.0000, sigma:  1.0000 energy: -0.933159806304\\n',\n",
       " ' 16 steps, tau:   64.0000, sigma:  1.0000 energy: -0.933214382058\\n',\n",
       " ' 17 steps, tau:   64.0000, sigma:  1.0000 energy: -0.933262183187\\n',\n",
       " ' 18 steps, tau:    2.e-09, sigma:  1.0000 energy: -0.933262183187\\n',\n",
       " ' 19 steps, tau:    2.0000, sigma:  0.5000 energy: -0.933270122635\\n',\n",
       " ' 20 steps, tau:    0.5000, sigma:  0.2500 energy: -0.933279577691\\n',\n",
       " ' 21 steps, tau:    4.0000, sigma:  0.1250 energy: -0.933341155036\\n',\n",
       " ' 22 steps, tau:    4.0000, sigma:  0.1250 energy: -0.933371450437\\n',\n",
       " ' 23 steps, tau:   16.0000, sigma:  0.1250 energy: -0.933418452185\\n',\n",
       " ' 24 steps, tau:    8.0000, sigma:  0.1250 energy: -0.933433890765\\n',\n",
       " ' 25 steps, tau:    0     , sigma:  0.1250 energy: -0.933433890765\\n',\n",
       " ' 26 steps, tau:    8.0000, sigma:  0.0625 energy: -0.933483289277\\n',\n",
       " ' 27 steps, tau:    8.0000, sigma:  0.0625 energy: -0.933510552111\\n',\n",
       " ' 28 steps, tau:    8.0000, sigma:  0.0625 energy: -0.933524614544\\n',\n",
       " ' 29 steps, tau:   16.0000, sigma:  0.0625 energy: -0.933531545070\\n',\n",
       " ' 30 steps, tau:    1.0000, sigma:  0.0312 energy: -0.933538793796\\n',\n",
       " ' 31 steps, tau:    0.2500, sigma:  0.0156 energy: -0.933539471951\\n',\n",
       " ' 32 steps, tau:    0.0625, sigma:  8.e-03 energy: -0.933539679815\\n',\n",
       " ' 33 steps, tau:    0.0625, sigma:  4.e-03 energy: -0.933540059138\\n',\n",
       " ' 34 steps, tau:    0.0312, sigma:  2.e-03 energy: -0.933540318854\\n',\n",
       " ' 35 steps, tau:    0.0312, sigma:  1.e-03 energy: -0.933541442564\\n',\n",
       " ' 36 steps, tau:    0     , sigma:  5.e-04 energy: -0.933541442564\\n',\n",
       " ' 37 steps, tau:    0     , sigma:  2.e-04 energy: -0.933541442564\\n',\n",
       " ' 38 steps, tau:    0     , sigma:  1.e-04 energy: -0.933541442564\\n',\n",
       " 'Descent needed 38 step(s).\\n',\n",
       " 'Using templates images ---------------------------------------\\n',\n",
       " 'testImg_0_STEM.tif\\n',\n",
       " 'testImg_1_STEM.tif\\n',\n",
       " 'testImg_2_STEM.tif\\n',\n",
       " 'testImg_3_STEM.tif\\n',\n",
       " '--------------------------------------------------------------\\n',\n",
       " 'Initial energy:  0.001424023615\\n',\n",
       " '  1 steps, tau:    2.e+04 energy:  0.001240461627 DEnorm: 0.000149976\\n',\n",
       " '  2 steps, tau:    2.e+04 energy:  0.001240038906 DEnorm: 8.45585e-06\\n',\n",
       " '  3 steps, tau:    3.e+04 energy:  0.001239944570 DEnorm: 4.79738e-06\\n',\n",
       " '  4 steps, tau:    3.e+04 energy:  0.001239895516 DEnorm: 3.7117e-06\\n',\n",
       " '  5 steps, tau:    2.e+04 energy:  0.001239878354 DEnorm: 3.0187e-06\\n',\n",
       " '  6 steps, tau:    3.e+04 energy:  0.001239866055 DEnorm: 2.68264e-06\\n',\n",
       " '  7 steps, tau:    3.e+04 energy:  0.001239858061 DEnorm: 2.38437e-06\\n',\n",
       " '  8 steps, tau:    3.e+04 energy:  0.001239849823 DEnorm: 2.22008e-06\\n',\n",
       " '  9 steps, tau:    2.e+04 energy:  0.001239844223 DEnorm: 2.08612e-06\\n',\n",
       " ' 10 steps, tau:    2.e+04 energy:  0.001239838972 DEnorm: 1.98223e-06\\n',\n",
       " ' 11 steps, tau:    3.e+04 energy:  0.001239834496 DEnorm: 1.8526e-06\\n',\n",
       " ' 12 steps, tau:    7.e+04 energy:  0.001239831354 DEnorm: 1.68262e-06\\n',\n",
       " ' 13 steps, tau:    3.e+04 energy:  0.001239830022 DEnorm: 1.56808e-06\\n',\n",
       " ' 14 steps, tau:    3.e+04 energy:  0.001239828924 DEnorm: 1.51224e-06\\n',\n",
       " ' 15 steps, tau:    3.e+04 energy:  0.001239827591 DEnorm: 1.4646e-06\\n',\n",
       " ' 16 steps, tau:    7.e+04 energy:  0.001239825903 DEnorm: 1.4116e-06\\n',\n",
       " ' 17 steps, tau:    8.e+03 energy:  0.001239825468 DEnorm: 1.35441e-06\\n',\n",
       " ' 18 steps, tau:    8.e+03 energy:  0.001239824861 DEnorm: 1.34463e-06\\n',\n",
       " ' 19 steps, tau:    8.e+03 energy:  0.001239824378 DEnorm: 1.33311e-06\\n',\n",
       " ' 20 steps, tau:    8.e+03 energy:  0.001239823882 DEnorm: 1.33346e-06\\n',\n",
       " ' 21 steps, tau:    7.e+04 energy:  0.001239818710 DEnorm: 1.33271e-06\\n',\n",
       " ' 22 steps, tau:    2.e+04 energy:  0.001239818257 DEnorm: 1.11687e-06\\n',\n",
       " ' 23 steps, tau:    2.e+04 energy:  0.001239817834 DEnorm: 1.09641e-06\\n',\n",
       " ' 24 steps, tau:    3.e+04 energy:  0.001239817309 DEnorm: 1.07138e-06\\n',\n",
       " ' 25 steps, tau:    3.e+04 energy:  0.001239816950 DEnorm: 1.03959e-06\\n',\n",
       " ' 26 steps, tau:    3.e+04 energy:  0.001239816625 DEnorm: 1.02048e-06\\n',\n",
       " ' 27 steps, tau:    7.e+04 energy:  0.001239816173 DEnorm: 1.00475e-06\\n',\n",
       " ' 28 steps, tau:    2.e+04 energy:  0.001239815996 DEnorm: 9.85467e-07\\n',\n",
       " 'Descent needed 28 step(s).\\n',\n",
       " 'Using templates images ---------------------------------------\\n',\n",
       " 'testImg_0_STEM.tif\\n',\n",
       " 'testImg_1_STEM.tif\\n',\n",
       " 'testImg_2_STEM.tif\\n',\n",
       " 'testImg_3_STEM.tif\\n',\n",
       " '--------------------------------------------------------------\\n',\n",
       " 'reading reference image from: results/stage2/median.q2bz\\n',\n",
       " 'reading template image from: testImg_0_STEM.tif\\n',\n",
       " 'Created directory results/stage3/\\n',\n",
       " 'Using templates images ---------------------------------------\\n',\n",
       " 'testImg_0_STEM.tif\\n',\n",
       " 'testImg_1_STEM.tif\\n',\n",
       " 'testImg_2_STEM.tif\\n',\n",
       " 'testImg_3_STEM.tif\\n',\n",
       " '--------------------------------------------------------------\\n',\n",
       " 'Created directory results/stage3/0/\\n',\n",
       " '\\n',\n",
       " '--------------------------------------------------------\\n',\n",
       " 'Registration on level 6 started\\n',\n",
       " '--------------------------------------------------------\\n',\n",
       " '\\n',\n",
       " 'Initial energy: -0.968652225856\\n',\n",
       " '  1 steps, tau:    0.5000, sigma:  1.0000 energy: -0.968739649521\\n',\n",
       " '  2 steps, tau:    0.2500, sigma:  1.0000 energy: -0.968774748183\\n',\n",
       " '  3 steps, tau:    0.2500, sigma:  1.0000 energy: -0.968800296639\\n',\n",
       " '  4 steps, tau:    0.2500, sigma:  1.0000 energy: -0.968816399719\\n',\n",
       " '  5 steps, tau:    0.5000, sigma:  1.0000 energy: -0.968838566110\\n',\n",
       " '  6 steps, tau:    8.0000, sigma:  1.0000 energy: -0.969024873586\\n',\n",
       " '  7 steps, tau:    0.0312, sigma:  1.0000 energy: -0.969035529298\\n',\n",
       " '  8 steps, tau:    0.0156, sigma:  1.0000 energy: -0.969038565530\\n',\n",
       " '  9 steps, tau:    8.e-03, sigma:  0.5000 energy: -0.969039749869\\n',\n",
       " ' 10 steps, tau:    8.e-03, sigma:  0.2500 energy: -0.969041208000\\n',\n",
       " ' 11 steps, tau:    1.0000, sigma:  0.1250 energy: -0.969842411867\\n',\n",
       " ' 12 steps, tau:    1.0000, sigma:  0.1250 energy: -0.969980971834\\n',\n",
       " ' 13 steps, tau:    2.0000, sigma:  0.1250 energy: -0.970018325958\\n',\n",
       " ' 14 steps, tau:    4.0000, sigma:  0.1250 energy: -0.970034786201\\n',\n",
       " ' 15 steps, tau:    2.0000, sigma:  0.1250 energy: -0.970036511321\\n',\n",
       " ' 16 steps, tau:    0.2500, sigma:  0.0625 energy: -0.970038406845\\n',\n",
       " ' 17 steps, tau:    0.0625, sigma:  0.0312 energy: -0.970040378581\\n',\n",
       " ' 18 steps, tau:    0.0156, sigma:  0.0156 energy: -0.970041348526\\n',\n",
       " ' 19 steps, tau:    8.e-03, sigma:  8.e-03 energy: -0.970041937184\\n',\n",
       " ' 20 steps, tau:    2.e-03, sigma:  4.e-03 energy: -0.970042084270\\n',\n",
       " ' 21 steps, tau:    0.0156, sigma:  2.e-03 energy: -0.970042730282\\n',\n",
       " ' 22 steps, tau:    2.e-03, sigma:  1.e-03 energy: -0.970042777388\\n',\n",
       " ' 23 steps, tau:    4.e-09, sigma:  5.e-04 energy: -0.970042777388\\n',\n",
       " ' 24 steps, tau:    0     , sigma:  2.e-04 energy: -0.970042777388\\n',\n",
       " ' 25 steps, tau:    0     , sigma:  1.e-04 energy: -0.970042777388\\n',\n",
       " 'Descent needed 25 step(s).\\n',\n",
       " '\\n',\n",
       " '--------------------------------------------------------\\n',\n",
       " 'Registration on level 7 started\\n',\n",
       " '--------------------------------------------------------\\n',\n",
       " '\\n',\n",
       " 'Initial energy: -0.965953020149\\n',\n",
       " '  1 steps, tau:    4.0000, sigma:  1.0000 energy: -0.966041001880\\n',\n",
       " '  2 steps, tau:   16.0000, sigma:  1.0000 energy: -0.966069120365\\n',\n",
       " '  3 steps, tau:    4.e-09, sigma:  1.0000 energy: -0.966069120365\\n',\n",
       " '  4 steps, tau:    1.0000, sigma:  0.5000 energy: -0.966079203850\\n',\n",
       " '  5 steps, tau:    0.2500, sigma:  0.5000 energy: -0.966082646394\\n',\n",
       " '  6 steps, tau:    1.0000, sigma:  0.2500 energy: -0.966117185119\\n',\n",
       " '  7 steps, tau:    4.0000, sigma:  0.2500 energy: -0.966201257912\\n',\n",
       " '  8 steps, tau:    2.0000, sigma:  0.2500 energy: -0.966251156509\\n',\n",
       " '  9 steps, tau:    1.0000, sigma:  0.2500 energy: -0.966284976468\\n',\n",
       " ' 10 steps, tau:    0.2500, sigma:  0.2500 energy: -0.966290336268\\n',\n",
       " ' 11 steps, tau:    4.0000, sigma:  0.1250 energy: -0.966350109948\\n',\n",
       " ' 12 steps, tau:   16.0000, sigma:  0.1250 energy: -0.966365114604\\n',\n",
       " ' 13 steps, tau:    0     , sigma:  0.1250 energy: -0.966365114604\\n',\n",
       " ' 14 steps, tau:    0.5000, sigma:  0.0625 energy: -0.966367293500\\n',\n",
       " ' 15 steps, tau:    0.0625, sigma:  0.0312 energy: -0.966368037054\\n',\n",
       " ' 16 steps, tau:    8.e-03, sigma:  0.0156 energy: -0.966368284209\\n',\n",
       " ' 17 steps, tau:    1.e-03, sigma:  8.e-03 energy: -0.966368369066\\n',\n",
       " ' 18 steps, tau:    0     , sigma:  4.e-03 energy: -0.966368369066\\n',\n",
       " ' 19 steps, tau:    0     , sigma:  2.e-03 energy: -0.966368369066\\n',\n",
       " ' 20 steps, tau:    0     , sigma:  1.e-03 energy: -0.966368369066\\n',\n",
       " ' 21 steps, tau:    0     , sigma:  5.e-04 energy: -0.966368369066\\n',\n",
       " ' 22 steps, tau:    0     , sigma:  2.e-04 energy: -0.966368369066\\n',\n",
       " ' 23 steps, tau:    0     , sigma:  1.e-04 energy: -0.966368369066\\n',\n",
       " 'Descent needed 23 step(s).\\n',\n",
       " '\\n',\n",
       " '--------------------------------------------------------\\n',\n",
       " 'Registration on level 8 started\\n',\n",
       " '--------------------------------------------------------\\n',\n",
       " '\\n',\n",
       " 'Initial energy: -0.950656965236\\n',\n",
       " '  1 steps, tau:   16.0000, sigma:  1.0000 energy: -0.950768450859\\n',\n",
       " '  2 steps, tau:   32.0000, sigma:  1.0000 energy: -0.950912401387\\n',\n",
       " '  3 steps, tau:   32.0000, sigma:  1.0000 energy: -0.951086410588\\n',\n",
       " '  4 steps, tau:    8.0000, sigma:  1.0000 energy: -0.951347768656\\n',\n",
       " '  5 steps, tau:    1.0000, sigma:  1.0000 energy: -0.951355109704\\n',\n",
       " '  6 steps, tau:    0     , sigma:  0.5000 energy: -0.951355109704\\n',\n",
       " '  7 steps, tau:    1.0000, sigma:  0.2500 energy: -0.951374060084\\n',\n",
       " '  8 steps, tau:    0.5000, sigma:  0.2500 energy: -0.951389887725\\n',\n",
       " '  9 steps, tau:    0.2500, sigma:  0.2500 energy: -0.951400687614\\n',\n",
       " ' 10 steps, tau:    0.5000, sigma:  0.2500 energy: -0.951426379453\\n',\n",
       " ' 11 steps, tau:    8.0000, sigma:  0.2500 energy: -0.951542061061\\n',\n",
       " ' 12 steps, tau:   16.0000, sigma:  0.2500 energy: -0.951703313680\\n',\n",
       " ' 13 steps, tau:    8.0000, sigma:  0.2500 energy: -0.951775067735\\n',\n",
       " ' 14 steps, tau:    8.0000, sigma:  0.2500 energy: -0.951830082114\\n',\n",
       " ' 15 steps, tau:   32.0000, sigma:  0.2500 energy: -0.951899431437\\n',\n",
       " ' 16 steps, tau:    2.0000, sigma:  0.2500 energy: -0.951901176766\\n',\n",
       " ' 17 steps, tau:    0.5000, sigma:  0.1250 energy: -0.951901942348\\n',\n",
       " ' 18 steps, tau:    0.2500, sigma:  0.0625 energy: -0.951904300986\\n',\n",
       " ' 19 steps, tau:    0.2500, sigma:  0.0312 energy: -0.951909884031\\n',\n",
       " ' 20 steps, tau:    0.1250, sigma:  0.0156 energy: -0.951911694419\\n',\n",
       " ' 21 steps, tau:    0.1250, sigma:  8.e-03 energy: -0.951928249440\\n',\n",
       " ' 22 steps, tau:    0.2500, sigma:  8.e-03 energy: -0.951942384247\\n',\n",
       " ' 23 steps, tau:    0.5000, sigma:  8.e-03 energy: -0.951961036485\\n',\n",
       " ' 24 steps, tau:    0     , sigma:  8.e-03 energy: -0.951961036485\\n',\n",
       " ' 25 steps, tau:    0     , sigma:  4.e-03 energy: -0.951961036485\\n',\n",
       " ' 26 steps, tau:    0     , sigma:  2.e-03 energy: -0.951961036485\\n',\n",
       " ' 27 steps, tau:    0     , sigma:  1.e-03 energy: -0.951961036485\\n',\n",
       " ' 28 steps, tau:    0     , sigma:  5.e-04 energy: -0.951961036485\\n',\n",
       " ' 29 steps, tau:    0     , sigma:  2.e-04 energy: -0.951961036485\\n',\n",
       " ' 30 steps, tau:    0     , sigma:  1.e-04 energy: -0.951961036485\\n',\n",
       " 'Descent needed 30 step(s).\\n',\n",
       " 'Created directory results/stage3/1-r/\\n',\n",
       " '\\n',\n",
       " '--------------------------------------------------------\\n',\n",
       " 'Registration on level 7 started\\n',\n",
       " '--------------------------------------------------------\\n',\n",
       " '\\n',\n",
       " 'Initial energy: -0.943239941641\\n',\n",
       " '  1 steps, tau:   16.0000, sigma:  1.0000 energy: -0.971750538384\\n',\n",
       " '  2 steps, tau:    8.0000, sigma:  1.0000 energy: -0.979236131371\\n',\n",
       " '  3 steps, tau:   16.0000, sigma:  1.0000 energy: -0.981503531965\\n',\n",
       " '  4 steps, tau:    8.0000, sigma:  1.0000 energy: -0.982258375005\\n',\n",
       " '  5 steps, tau:    8.0000, sigma:  1.0000 energy: -0.982487799638\\n',\n",
       " '  6 steps, tau:   32.0000, sigma:  1.0000 energy: -0.983685301129\\n',\n",
       " '  7 steps, tau:    2.0000, sigma:  1.0000 energy: -0.984046349346\\n',\n",
       " '  8 steps, tau:    0.5000, sigma:  1.0000 energy: -0.984106340817\\n',\n",
       " '  9 steps, tau:    0.2500, sigma:  1.0000 energy: -0.984132823206\\n',\n",
       " ' 10 steps, tau:    0.5000, sigma:  1.0000 energy: -0.984169001707\\n',\n",
       " ' 11 steps, tau:    8.0000, sigma:  1.0000 energy: -0.984491884620\\n',\n",
       " ' 12 steps, tau:   16.0000, sigma:  1.0000 energy: -0.984733411772\\n',\n",
       " ' 13 steps, tau:   16.0000, sigma:  1.0000 energy: -0.984982586210\\n',\n",
       " ' 14 steps, tau:   16.0000, sigma:  1.0000 energy: -0.985099981260\\n',\n",
       " ' 15 steps, tau:    2.0000, sigma:  1.0000 energy: -0.985122727473\\n',\n",
       " ' 16 steps, tau:    0     , sigma:  1.0000 energy: -0.985122727473\\n',\n",
       " ' 17 steps, tau:    0     , sigma:  0.5000 energy: -0.985122727473\\n',\n",
       " ' 18 steps, tau:    1.0000, sigma:  0.2500 energy: -0.985152071602\\n',\n",
       " ' 19 steps, tau:    0.2500, sigma:  0.2500 energy: -0.985161539283\\n',\n",
       " ' 20 steps, tau:    0.5000, sigma:  0.1250 energy: -0.985205791905\\n',\n",
       " ' 21 steps, tau:    2.0000, sigma:  0.1250 energy: -0.985266197699\\n',\n",
       " ' 22 steps, tau:    0.1250, sigma:  0.1250 energy: -0.985269139940\\n',\n",
       " ' 23 steps, tau:    0.1250, sigma:  0.0625 energy: -0.985281748077\\n',\n",
       " ' 24 steps, tau:    0.0625, sigma:  0.0625 energy: -0.985287730716\\n',\n",
       " ' 25 steps, tau:    0.0312, sigma:  0.0312 energy: -0.985297200940\\n',\n",
       " ' 26 steps, tau:    4.e-03, sigma:  0.0156 energy: -0.985299720948\\n',\n",
       " ' 27 steps, tau:    2.e-03, sigma:  8.e-03 energy: -0.985302812756\\n',\n",
       " ' 28 steps, tau:    5.e-04, sigma:  4.e-03 energy: -0.985304144101\\n',\n",
       " ' 29 steps, tau:    5.e-04, sigma:  2.e-03 energy: -0.985305969521\\n',\n",
       " ' 30 steps, tau:    5.e-04, sigma:  1.e-03 energy: -0.985307611320\\n',\n",
       " ' 31 steps, tau:    0.0156, sigma:  5.e-04 energy: -0.985310899308\\n',\n",
       " ' 32 steps, tau:    4.e-09, sigma:  2.e-04 energy: -0.985310899308\\n',\n",
       " ' 33 steps, tau:    0     , sigma:  1.e-04 energy: -0.985310899308\\n',\n",
       " 'Descent needed 33 step(s).\\n',\n",
       " '\\n',\n",
       " '--------------------------------------------------------\\n',\n",
       " 'Registration on level 8 started\\n',\n",
       " '--------------------------------------------------------\\n',\n",
       " '\\n',\n",
       " 'Initial energy: -0.969527892957\\n',\n",
       " '  1 steps, tau:   16.0000, sigma:  1.0000 energy: -0.971036963143\\n',\n",
       " '  2 steps, tau:   64.0000, sigma:  1.0000 energy: -0.972288733726\\n',\n",
       " '  3 steps, tau:    2.0000, sigma:  1.0000 energy: -0.972481318572\\n',\n",
       " '  4 steps, tau:    2.0000, sigma:  1.0000 energy: -0.972544586280\\n',\n",
       " '  5 steps, tau:    1.0000, sigma:  1.0000 energy: -0.972565656980\\n',\n",
       " '  6 steps, tau:    1.0000, sigma:  1.0000 energy: -0.972583792603\\n',\n",
       " '  7 steps, tau:    2.0000, sigma:  1.0000 energy: -0.972611913023\\n',\n",
       " '  8 steps, tau:    8.0000, sigma:  1.0000 energy: -0.972710936355\\n',\n",
       " '  9 steps, tau:    2.0000, sigma:  1.0000 energy: -0.972786290112\\n',\n",
       " ' 10 steps, tau:    0.5000, sigma:  1.0000 energy: -0.972807552974\\n',\n",
       " ' 11 steps, tau:    8.0000, sigma:  1.0000 energy: -0.972911799811\\n',\n",
       " ' 12 steps, tau:    4.0000, sigma:  1.0000 energy: -0.972933645154\\n',\n",
       " ' 13 steps, tau:    0.0625, sigma:  1.0000 energy: -0.972934010967\\n',\n",
       " ' 14 steps, tau:    0.2500, sigma:  0.5000 energy: -0.972938082749\\n',\n",
       " ' 15 steps, tau:    0.5000, sigma:  0.2500 energy: -0.972961894706\\n',\n",
       " ' 16 steps, tau:    1.0000, sigma:  0.2500 energy: -0.972997363177\\n',\n",
       " ' 17 steps, tau:    0.5000, sigma:  0.2500 energy: -0.973019434933\\n',\n",
       " ' 18 steps, tau:    0.5000, sigma:  0.2500 energy: -0.973050823416\\n',\n",
       " ' 19 steps, tau:    0.5000, sigma:  0.2500 energy: -0.973087746706\\n',\n",
       " ' 20 steps, tau:    0.2500, sigma:  0.2500 energy: -0.973106931069\\n',\n",
       " ' 21 steps, tau:    4.0000, sigma:  0.2500 energy: -0.973199276061\\n',\n",
       " ' 22 steps, tau:   32.0000, sigma:  0.2500 energy: -0.973358369203\\n',\n",
       " ' 23 steps, tau:    1.0000, sigma:  0.2500 energy: -0.973382172011\\n',\n",
       " ' 24 steps, tau:    0.5000, sigma:  0.2500 energy: -0.973388665392\\n',\n",
       " ' 25 steps, tau:    0.0625, sigma:  0.1250 energy: -0.973389064743\\n',\n",
       " ' 26 steps, tau:    0.0625, sigma:  0.0625 energy: -0.973390233472\\n',\n",
       " ' 27 steps, tau:    0.0625, sigma:  0.0312 energy: -0.973392575163\\n',\n",
       " ' 28 steps, tau:    0.0312, sigma:  0.0156 energy: -0.973394245391\\n',\n",
       " ...]"
      ]
     },
     "execution_count": 9,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "job[\"output.log\"]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": []
  }
 ],
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