updated paired_end function

Author: niekwit

workflow/Snakefile

@@ -23,7 +23,7 @@ csv = pd.read_csv("config/samples.csv")
 resources = Resources(config["genome"], config["ensembl_genome_build"])
 
 # Get paired-end status and bam extension
-paired_end, BAM_EXT = paired_end()
+paired_end = paired_end()
 
 # Get fusion protein (to be masked in fasta file)
 maskedgenes = masked_genes()

workflow/rules/deeptools.smk

@@ -25,7 +25,7 @@ rule multiBigwigSummary_bedgraph:
 
 use rule multiBigwigSummary_bedgraph as multiBigwigSummary_bam with:
     input:
-        expand("results/bigwig/bam2bigwig/{dir}/{sample}{bamext}.bw", dir=DIRS , sample=SAMPLES, bamext=BAM_EXT),
+        expand("results/bigwig/bam2bigwig/{dir}/{sample}.bw", dir=DIRS , sample=SAMPLES),
     output:
         "results/deeptools/scores_per_bin_bam.npz",
     params: