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.test/config/config.yaml

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@@ -39,16 +39,16 @@ peak_calling_perl:
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step: 0.01 # Stepping for quantiles
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unified_peaks: max # Method for calling peak overlaps. 'min': call minimum overlapping peak area. 'max': call maximum overlap as peak
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extra: ""
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overlapping_peaks:
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max_size: 10 # Maximum size of peaks to be extended
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extend_by: 40 # Number of bp to extend peaks on either side
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keep: 2 # Minimum number peaks that must overlap to keep
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peak_calling_macs2:
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run: False
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mode: narrow
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qvalue: 0.05
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broad_cutoff: 0.1
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extra: ""
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consensus_peaks:
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max_size: 10 # Maximum size of peaks to be extended
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extend_by: 40 # Number of bp to extend peaks on either side
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keep: 2 # Minimum number peaks that must overlap to keep
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resources: # computing resources
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trim:
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cpu: 8

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