Commit 6f3fa2b 1 parent bcb65b3 commit 6f3fa2b Copy full SHA for 6f3fa2b
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lines changed Original file line number Diff line number Diff line change @@ -39,16 +39,16 @@ peak_calling_perl:
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step : 0.01 # Stepping for quantiles
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unified_peaks : max # Method for calling peak overlaps. 'min': call minimum overlapping peak area. 'max': call maximum overlap as peak
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extra : " "
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- overlapping_peaks :
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- max_size : 10 # Maximum size of peaks to be extended
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- extend_by : 40 # Number of bp to extend peaks on either side
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- keep : 2 # Minimum number peaks that must overlap to keep
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peak_calling_macs2 :
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run : False
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mode : narrow
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qvalue : 0.05
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broad_cutoff : 0.1
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extra : " "
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+ consensus_peaks :
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+ max_size : 10 # Maximum size of peaks to be extended
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+ extend_by : 40 # Number of bp to extend peaks on either side
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+ keep : 2 # Minimum number peaks that must overlap to keep
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resources : # computing resources
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trim :
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cpu : 8
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