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README.md

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@@ -260,16 +260,16 @@ printshellcmds: True
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show-failed-logs: True
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```
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When running on a slurm-based HPC, the following lines can be included in `config.yaml`:
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When running on a slurm-based HPC, the following lines should be included in `config.yaml`:
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```yaml
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executor: slurm
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jobs: 100
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apptainer-args: "--bind '/parent_dir/of/analysis'" # if analysis in not in /home/$USER
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default-resources:
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slurm_partition: icelake
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slurm_account: <ACCOUNT>
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```
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Snakemake supports between workflow caching, so that certain resource files, such as the Bowtie2 index, can be re-used between different analyses.
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## Dry-run of the analysis
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