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ngsLCA: ngsLCA.cpp:60: void mod_db(int*, int*, int2int&, int2char&, int2char&): Assertion `parent.count(out[i])==1' #24

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itpcas-zcb opened this issue Aug 2, 2024 · 1 comment
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ngsLCA: ngsLCA.cpp:60: void mod_db(int*, int*, int2int&, int2char&, int2char&): Assertion `parent.count(out[i])==1' #24

itpcas-zcb opened this issue Aug 2, 2024 · 1 comment

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@itpcas-zcb
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I used sequencing data to align with Bowtie2 to the GTDB database, and then I used the gtdb_to_taxdump.py and acc2gtdb_tax.py scripts to generate name, nodes, and acc2tax files. However, I encountered an error when using ngsLCA to annotate the bam file: ngsLCA: ngsLCA.cpp:60: void mod_db(int*, int*, int2int&, int2char&, int2char&): Assertion `parent.count(out[i])==1' failed
@nick-youngblut
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What is ngsLCA?

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@nick-youngblut @itpcas-zcb