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Welcome to the CLdb Wiki!

This wiki is a guide to database creation and performing workflows with the database.

Help

• Getting help

For the impatient

• Quick tutorial

Starting out

• Requirements
• Database setup
• Initial data loading

Workflows

General data retrieval

• Get summary info
• Get a fasta

Leaders

• Find and load leaders

Spacer blast

• blast vs genome
• blast vs nt
• GFF3 of blast hits

PAMs

• get PAMs

Plotting loci

• make input tables
• plotting

Classifying arrays based on direct repeats