diff --git a/em_workflows/dm_conversion/flow.py b/em_workflows/dm_conversion/flow.py index dd735b81..dfa4b526 100644 --- a/em_workflows/dm_conversion/flow.py +++ b/em_workflows/dm_conversion/flow.py @@ -2,7 +2,7 @@ from typing import Optional from prefect import flow, task, unmapped, allow_failure -from pytools.meta import is_int16 +from pytools.meta import is_int16, is_16bit from pytools.convert import file_to_uint8 from em_workflows.utils import utils @@ -66,7 +66,7 @@ def convert_if_int16_tiff(file_path: FilePath) -> None: """ if not ( file_path.fp_in.suffix.strip(".").lower() in TIFS_EXT - and is_int16(file_path.fp_in) + and is_16bit(file_path.fp_in) ): return tif_8_bit = file_path.gen_output_fp(out_fname="as_8_bit.tif") diff --git a/requirements.txt b/requirements.txt index f5d65e4f..65ec8f1b 100644 --- a/requirements.txt +++ b/requirements.txt @@ -3,4 +3,4 @@ prefect==2.19.1 prefect[dask] dask-jobqueue natsort -pytools@https://github.com/niaid/tomojs-pytools/releases/download/v3.1.1/pytools-3.1.1-py3-none-any.whl +pytools@https://github.com/niaid/tomojs-pytools/releases/download/v3.2.0/pytools-3.2.0-py3-none-any.whl