book.bib

@book{adler2010,
  title = {R in a Nutshell},
  author = {Adler, Joseph},
  date = {2010},
  publisher = {{O'Reilly}},
  location = {{Sebastopol, CA}},
  isbn = {978-0-596-80170-0},
  langid = {english}
}

@article{aitchison1982,
  title = {The {{Statistical Analysis}} of {{Compositional Data}}},
  author = {Aitchison, J.},
  date = {1982-01},
  journaltitle = {Journal of the Royal Statistical Society: Series B (Methodological)},
  volume = {44},
  number = {2},
  pages = {139--160},
  issn = {00359246},
  doi = {10.1111/j.2517-6161.1982.tb01195.x},
  langid = {english}
}

@book{aitchison1986,
  title = {The {{Statistical Analysis}} of {{Compositional Data}}},
  author = {Aitchison, J.},
  date = {1986},
  series = {Monographs on Statistics and Applied Probability},
  publisher = {{Chapman and Hall}},
  location = {{Londres, UK ; New York, USA}},
  doi = {10.1007/978-94-009-4109-0},
  isbn = {978-94-009-4109-0},
  langid = {english},
  pagetotal = {416}
}

@article{aitchison2005,
  title = {The Role of Perturbation in Compositional Data Analysis},
  author = {Aitchison, J. and Ng, K. W.},
  date = {2005-07},
  journaltitle = {Statistical Modelling: An International Journal},
  volume = {5},
  number = {2},
  pages = {173--185},
  issn = {1471-082X, 1477-0342},
  doi = {10.1191/1471082X05st091oa},
  abstract = {In standard multivariate statistical analysis, common hypotheses of interest concern changes in mean vectors and subvectors. In compositional data analysis it is now well established that compositional change is most readily described in terms of the simplicial operation of perturbation and that subcompositions replace the marginal concept of subvectors. Against the background of two motivating experimental studies in the food industry, involving the compositions of cow’s milk and chicken carcasses, this paper emphasizes the importance of recognizing this fundamental operation of change in the associated simplex sample space. Well-defined hypotheses about the nature of any compositional effect can be expressed, for example, in terms of perturbation values and subcompositional stability and testing procedures developed. These procedures are applied to lattices of such hypotheses in the two practical situations. We identify the two problems as being the counterpart of the analysis of paired comparison or split plot experiments and of separate sample comparative experiments in the jargon of standard multivariate analysis.},
  langid = {english}
}

@article{almiron2009,
  title = {The Reliability of Statistical Functions in Four Software Packages Freely Used in Numerical Computation},
  author = {Almiron, Marcelo G. and Almeida, Eliana S. and Miranda, Marcio N.},
  date = {2009-12-01},
  journaltitle = {Brazilian Journal of Probability and Statistics},
  shortjournal = {Braz. J. Probab. Stat.},
  volume = {23},
  number = {2},
  issn = {0103-0752},
  doi = {10.1214/08-BJPS017},
  langid = {english}
}

@article{anderson1947,
  title = {Radiocarbon {{From Cosmic Radiation}}},
  author = {Anderson, E. C. and Libby, W. F. and Weinhouse, S. and Reid, A. F. and Kirshenbaum, A. D. and Grosse, A. V.},
  date = {1947-05-30},
  journaltitle = {Science},
  volume = {105},
  number = {2735},
  pages = {576--577},
  issn = {0036-8075, 1095-9203},
  doi = {10.1126/science.105.2735.576},
  langid = {english}
}

@article{arnold1949,
  title = {Age {{Determinations}} by {{Radiocarbon Content}}: {{Checks}} with {{Samples}} of {{Known Age}}},
  shorttitle = {Age {{Determinations}} by {{Radiocarbon Content}}},
  author = {Arnold, J. R. and Libby, W. F.},
  date = {1949-12-23},
  journaltitle = {Science},
  volume = {110},
  number = {2869},
  pages = {678--680},
  issn = {0036-8075, 1095-9203},
  doi = {10.1126/science.110.2869.678},
  langid = {english}
}

@article{baggerly2009,
  title = {Deriving Chemosensitivity from Cell Lines: {{Forensic}} Bioinformatics and Reproducible Research in High-Throughput Biology},
  shorttitle = {Deriving Chemosensitivity from Cell Lines},
  author = {Baggerly, Keith A. and Coombes, Kevin R.},
  date = {2009-12-01},
  journaltitle = {The Annals of Applied Statistics},
  shortjournal = {Ann. Appl. Stat.},
  volume = {3},
  number = {4},
  issn = {1932-6157},
  doi = {10.1214/09-AOAS291}
}

@article{baker2016,
  title = {Muddled Meanings Hamper Efforts to Fix Reproducibility Crisis},
  author = {Baker, Monya},
  date = {2016-06-14},
  journaltitle = {Nature},
  shortjournal = {Nature},
  issn = {0028-0836, 1476-4687},
  doi = {10.1038/nature.2016.20076},
  langid = {english}
}

@article{barnes2010,
  title = {Publish Your Computer Code: It Is Good Enough},
  shorttitle = {Publish Your Computer Code},
  author = {Barnes, Nick},
  date = {2010-10},
  journaltitle = {Nature},
  shortjournal = {Nature},
  volume = {467},
  number = {7317},
  pages = {753--753},
  issn = {0028-0836, 1476-4687},
  doi = {10.1038/467753a},
  langid = {english}
}

@book{barnier2021,
  title = {Introduction à R et au tidyverse},
  author = {Barnier, Julien},
  date = {2021},
  url = {https://juba.github.io/tidyverse},
  langid = {french}
}

@inproceedings{bateman2010,
  title = {Useful Junk? {{The}} Effects of Visual Embellishment on Comprehension and Memorability of Charts},
  shorttitle = {Useful Junk?},
  booktitle = {Proceedings of the 28th International Conference on {{Human}} Factors in Computing Systems - {{CHI}} '10},
  author = {Bateman, Scott and Mandryk, Regan L. and Gutwin, Carl and Genest, Aaron and McDine, David and Brooks, Christopher},
  date = {2010},
  pages = {2573},
  publisher = {{ACM Press}},
  location = {{Atlanta, Georgia, USA}},
  doi = {10.1145/1753326.1753716},
  eventtitle = {The 28th International Conference},
  isbn = {978-1-60558-929-9},
  langid = {english}
}

@book{baxter2003,
  title = {Statistics in Archaeology},
  author = {Baxter, Michael},
  date = {2003},
  series = {Arnold Applications of Statistics},
  edition = {1. publ},
  publisher = {{Arnold}},
  location = {{London}},
  isbn = {978-0-340-76299-8},
  langid = {english},
  pagetotal = {292}
}

@book{bertin1977,
  title = {La graphique et le traitement graphique de l'information},
  author = {Bertin, Jacques},
  date = {1977},
  series = {Nouvelle Bibliothèque Scientifique},
  publisher = {{Flammarion}},
  location = {{Paris}},
  isbn = {2-08-211112-1},
  langid = {french},
  pagetotal = {273},
  keywords = {TODO}
}

@article{bond-lamberty2016,
  title = {Running an Open Experiment: Transparency and Reproducibility in Soil and Ecosystem Science},
  shorttitle = {Running an Open Experiment},
  author = {Bond-Lamberty, Ben and Smith, A Peyton and Bailey, Vanessa},
  date = {2016-08-01},
  journaltitle = {Environmental Research Letters},
  shortjournal = {Environ. Res. Lett.},
  volume = {11},
  number = {8},
  pages = {084004},
  issn = {1748-9326},
  doi = {10.1088/1748-9326/11/8/084004}
}

@article{borer2009,
  title = {Some {{Simple Guidelines}} for {{Effective Data Management}}},
  author = {Borer, Elizabeth T. and Seabloom, Eric W. and Jones, Matthew B. and Schildhauer, Mark},
  date = {2009-04},
  journaltitle = {Bulletin of the Ecological Society of America},
  shortjournal = {Bulletin of the Ecological Society of America},
  volume = {90},
  number = {2},
  pages = {205--214},
  issn = {0012-9623},
  doi = {10.1890/0012-9623-90.2.205},
  langid = {english}
}

@book{bryan2020,
  title = {{{STAT}} 545: {{Data}} Wrangling, Exploration, and Analysis with {{R}}},
  author = {Bryan, Jenny},
  date = {2020},
  url = {https://stat545.com/},
  abstract = {A book on data wrangling, exploration, \& analysis with R.},
  langid = {english}
}

@book{bryan2021,
  title = {Happy {{Git}} and {{GitHub}} for the {{useR}}},
  author = {Bryan, Jenny},
  date = {2021},
  url = {https://happygitwithr.com/},
  abstract = {Using Git and GitHub with R, Rstudio, and R Markdown.},
  langid = {english}
}

@article{calabrisotto2017,
  title = {Strategies for {{Sampling Difficult Archaeological Contexts}} and {{Improving}} the {{Quality}} of {{Radiocarbon Data}}: {{The Case}} of {{Erimi Laonin Tou Porakou}}, {{Cyprus}}},
  shorttitle = {Strategies for {{Sampling Difficult Archaeological Contexts}} and {{Improving}} the {{Quality}} of {{Radiocarbon Data}}},
  author = {Calabrisotto, C Scirè and Amadio, M and Fedi, M E and Liccioli, L and Bombardieri, L},
  date = {2017-12},
  journaltitle = {Radiocarbon},
  shortjournal = {Radiocarbon},
  volume = {59},
  number = {6},
  pages = {1919--1930},
  issn = {0033-8222, 1945-5755},
  doi = {10.1017/RDC.2017.92},
  abstract = {After decades of collaborative experience between archaeologists and radiocarbon scientists, with the aim at producing radiocarbon dates capable of answering the most various research questions, it is now widely recognized that an accurate sampling strategy is the cornerstone of a solid 14C-based chronology. In this paper, we discuss the sampling criteria required to obtain good quality 14C data within a challenging archaeological context like the Bronze Age site of Erimi Laonin tou Porakou (Limassol, Cyprus). Following a dedicated sampling strategy, in the productive complex of the settlement, charcoal samples were collected from secure contexts according to stratigraphic examination of excavated strata and analysis of associated features and material culture. Micromorphology was also applied for a more accurate interpretation of individual deposits and reconstruction of depositional and post-depositional processes. In the necropolis, bone samples were selected among the fragmentary and commingled human remains through evaluation of the preservation state and the minimum number of individuals (MNI). A discrepancy between the charcoal and the bone 14C determinations was encountered, probably due to old wood issues. The 14C dates were analyzed using a Bayesian model that incorporates the archaeological information, and a preliminary 14C-based chronology was defined for this site.},
  langid = {english}
}

@article{carswell1992,
  title = {Choosing {{Specifiers}}: {{An Evaluation}} of the {{Basic Tasks Model}} of {{Graphical Perception}}},
  shorttitle = {Choosing {{Specifiers}}},
  author = {Carswell, C. Melody},
  date = {1992-10},
  journaltitle = {Human Factors: The Journal of the Human Factors and Ergonomics Society},
  shortjournal = {Hum Factors},
  volume = {34},
  number = {5},
  pages = {535--554},
  issn = {0018-7208, 1547-8181},
  doi = {10.1177/001872089203400503},
  abstract = {Effect sizes obtained from 39 experiments were used to evaluate the predictions of the basic tasks model of graphical efficacy. This model predicts that performance will be attenuated with graphical displays as a function of the particular specifier, or visual dimension, used to code data values. In this review the basic tasks model predicted performance more accurately than did Tufte's data-ink principle. In addition, variability in effect sizes across studies revealed that the model was more successful at predicting performance in local (focusing) tasks than in global information synthesis tasks. Furthermore, the model was better at predicting performance in tasks requiring the use of physically present rather than remembered graphs. Further differences in effect sizes resulted from variability in the exact specifiers used in experimental graphs. Minimal differences were obtained among graphs that used position, length, or angle as specifiers. However, graphs that used area or volume to represent quantitative values were associated with consistently worse performance than found with other formats.},
  langid = {english}
}

@book{chang2012,
  title = {R Graphics Cookbook},
  author = {Chang, Winston},
  date = {2012},
  publisher = {{O'Reilly Media}},
  location = {{Sebastopol, CA}},
  isbn = {978-1-4493-1695-2},
  langid = {english}
}

@article{chayes1960,
  title = {On Correlation between Variables of Constant Sum},
  author = {Chayes, F.},
  date = {1960-12},
  journaltitle = {Journal of Geophysical Research},
  volume = {65},
  number = {12},
  pages = {4185--4193},
  issn = {01480227},
  doi = {10.1029/JZ065i012p04185},
  abstract = {Composition data are subject to the condition that the sum of the parent variables in any item is constant. This imposes a linear restraint which suppresses positive and increases negative covariance. Neither the resulting ‘spurious’ correlation itself nor the difficulty it creates with regard to the interpretation of composition data has been adequately described, and no general remedy has yet been suggested. This note describes some of the more important effects of a constant item-sum on correlation. It also proposes a test against the alternative of ‘spurious’ correlation arising from interaction between variables of equal variance, and a modification that may prove applicable to arrays characterized by inhomogeneous variance.},
  langid = {english}
}

@article{cleveland1984,
  title = {Graphical {{Perception}}: {{Theory}}, {{Experimentation}}, and {{Application}} to the {{Development}} of {{Graphical Methods}}},
  shorttitle = {Graphical {{Perception}}},
  author = {Cleveland, William S. and McGill, Robert},
  date = {1984-09},
  journaltitle = {Journal of the American Statistical Association},
  shortjournal = {Journal of the American Statistical Association},
  volume = {79},
  number = {387},
  pages = {531--554},
  issn = {0162-1459, 1537-274X},
  doi = {10.1080/01621459.1984.10478080},
  langid = {english}
}

@article{colman1987,
  title = {Suggested {{Terminology}} for {{Quaternary Dating Methods}}},
  author = {Colman, Steven M. and Pierce, Kenneth L. and Birkeland, Peter W.},
  date = {1987-09},
  journaltitle = {Quaternary Research},
  volume = {28},
  number = {2},
  pages = {314--319},
  issn = {0033-5894, 1096-0287},
  doi = {10.1016/0033-5894(87)90070-6},
  langid = {english}
}

@article{cortes2009,
  title = {On the {{Harker Variation Diagrams}}; {{A Comment}} on “{{The Statistical Analysis}} of {{Compositional Data}}. {{Where Are We}} and {{Where Should We Be Heading}}?” By {{Aitchison}} and {{Egozcue}} (2005)},
  shorttitle = {On the {{Harker Variation Diagrams}}},
  author = {Cortés, Joaquín A.},
  date = {2009-10},
  journaltitle = {Mathematical Geosciences},
  volume = {41},
  number = {7},
  pages = {817--828},
  issn = {1874-8961, 1874-8953},
  doi = {10.1007/s11004-009-9222-8},
  abstract = {The current theoretical development of the analysis of compositional data in the article by Aitchison and Egozcue neglects the use of Harker’s variation diagrams and other similar plots as “meaningless” or “useless” on compositional data. In this work, it is shown that variation diagrams essentially are not a correlation tool but a graphical representation of the mass actions and mass balances principles in the context of a given geological system, and, when they are used correctly, they provide vital information for the igneous petrologist. The qualitative validity of the “spurious trends” in these diagrams is also shown, when they are interpreted in their proper geological framework. The example previously used by Rollinson to test the usefulness of the log-ratio transformation in the Aitchison and Egozcue article is revisited here in order to fully illustrate the proper use of this tool.},
  langid = {english}
}

@article{damon1989,
  title = {Radiocarbon Dating of the {{Shroud}} of {{Turin}}},
  author = {Damon, P. E. and Donahue, D. J. and Gore, B. H. and Hatheway, A. L. and Jull, A. J. T. and Linick, T. W. and Sercel, P. J. and Toolin, L. J. and Bronk, C. R. and Hall, E. T. and Hedges, R. E. M. and Housley, R. and Law, I. A. and Perry, C. and Bonani, G. and Trumbore, S. and Woelfli, W. and Ambers, J. C. and Bowman, S. G. E. and Leese, M. N. and Tite, M. S.},
  date = {1989-02-16},
  journaltitle = {Nature},
  volume = {337},
  number = {6208},
  pages = {611--615},
  issn = {0028-0836},
  doi = {10.1038/337611a0}
}

@incollection{dean1978,
  title = {Independent {{Dating}} in {{Archaeological Analysis}}},
  booktitle = {Advances in {{Archaeological Method}} and {{Theory}}},
  author = {Dean, Jeffrey S.},
  date = {1978},
  pages = {223--255},
  publisher = {{Elsevier}},
  doi = {10.1016/B978-0-12-003101-6.50013-5},
  isbn = {978-0-12-003101-6},
  langid = {english}
}

@book{drennan2009,
  title = {Statistics for {{Archaeologists}}},
  author = {Drennan, Robert D.},
  date = {2009},
  series = {Interdisciplinary {{Contributions}} to {{Archaeology}}},
  publisher = {{Springer US}},
  location = {{Boston, MA}},
  doi = {10.1007/978-1-4419-0413-3},
  isbn = {978-1-4419-0412-6}
}

@article{feldman-stewart2000,
  title = {Perception of {{Quantitative Information}} for {{Treatment Decisions}}},
  author = {Feldman-Stewart, Deb and Kocovski, Nancy and McConnell, Beth A. and Brundage, Michael D. and Mackillop, William J.},
  date = {2000-04},
  journaltitle = {Medical Decision Making},
  shortjournal = {Med Decis Making},
  volume = {20},
  number = {2},
  pages = {228--238},
  issn = {0272-989X, 1552-681X},
  doi = {10.1177/0272989X0002000208},
  abstract = {The study was designed to determine which formats for displaying quantities, such as probabilities of treatment risks and benefits, are perceived most accurately and easily by patients. Accuracy and speed of processing were compared for six different presentation formats: pie charts, vertical bars, horizontal bars, numbers, systematic ovals, and random ovals. Quantities were used in two tasks: a choice task that required larger/smaller judgments and an estimate task that required more precise evaluation. The impacts of blue-yellow color and of a treatment-decision context on performance in the two tasks were also investigated. The study included four experiments. Taken together the results suggest that the formats best for making a choice differ from those best for estimating the size of an amount. For making a choice, vertical bars, horizontal bars, numbers, and systematic ovals were equally well perceived; pie charts and random ovals caused slower and less accurate performances. For estimating, numbers led to the most accurate estimates, followed by systematic ovals. The other four formats led to the least accurate estimates. Color and context did not alter which formats were best. Key words: decision making; quantitative information presentation; questionnaire format. (Med Decis Making 2000;20:228-238)},
  langid = {english}
}

@inproceedings{ferris1999,
  title = {What’s in a {{Name}}? {{The Implications}} of {{Archaeological Terminology Used}} in {{Nonarchaeological Contexts}}},
  shorttitle = {What’s in a {{Name}}?},
  booktitle = {Taming the {{Taxonomy}}: {{Toward}} a {{New Understanding}} of {{Great Lakes Archaeology}}},
  author = {Ferris, Neal},
  editor = {Williamson, Ronald and Watts, Christopher},
  date = {1999},
  pages = {111--121},
  publisher = {{Eastendbooks}},
  location = {{Toronto}},
  eventtitle = {1997 {{Ontario Archaeological Society Midwest Archaeological Conference Symposium}} in {{Toronto}}},
  isbn = {978-1-896973-18-0},
  langid = {english}
}

@article{filzmoser2005,
  title = {Multivariate Outlier Detection in Exploration Geochemistry},
  author = {Filzmoser, Peter and Garrett, Robert G. and Reimann, Clemens},
  date = {2005-06},
  journaltitle = {Computers \& Geosciences},
  volume = {31},
  number = {5},
  pages = {579--587},
  issn = {00983004},
  doi = {10.1016/j.cageo.2004.11.013},
  langid = {english}
}

@article{filzmoser2008,
  title = {Outlier {{Detection}} for {{Compositional Data Using Robust Methods}}},
  author = {Filzmoser, Peter and Hron, Karel},
  date = {2008-04},
  journaltitle = {Mathematical Geosciences},
  volume = {40},
  number = {3},
  pages = {233--248},
  issn = {1874-8961, 1874-8953},
  doi = {10.1007/s11004-007-9141-5},
  abstract = {Outlier detection based on the Mahalanobis distance (MD) requires an appropriate transformation in case of compositional data. For the family of logratio transformations (additive, centered and isometric logratio transformation) it is shown that the MDs based on classical estimates are invariant to these transformations, and that the MDs based on affine equivariant estimators of location and covariance are the same for additive and isometric logratio transformation. Moreover, for 3-dimensional compositions the data structure can be visualized by contour lines. In higher dimension the MDs of closed and opened data give an impression of the multivariate data behavior.},
  langid = {english}
}

@article{filzmoser2012,
  title = {Interpretation of Multivariate Outliers for Compositional Data},
  author = {Filzmoser, Peter and Hron, Karel and Reimann, Clemens},
  date = {2012-02},
  journaltitle = {Computers \& Geosciences},
  volume = {39},
  pages = {77--85},
  issn = {00983004},
  doi = {10.1016/j.cageo.2011.06.014},
  abstract = {Compositional data—and most data in geochemistry are of this type—carry relative rather than absolute information. For multivariate outlier detection methods this implies that not the given data but appropriately transformed data need to be used. We use the isometric logratio (ilr) transformation, which seems to be generally the most proper one for theoretical and practical reasons. In this space it is difficult to interpret the outliers, because the reason for outlyingness can be complex. Therefore we introduce tools that support the interpretation of outliers by representing multivariate information in biplots, maps, and univariate scatterplots.},
  langid = {english},
  keywords = {TODO}
}

@book{fletcher1991,
  title = {Digging Numbers: Elementary Statistics for Archaeologists},
  shorttitle = {Digging Numbers},
  author = {Fletcher, Mike and Lock, Gary R.},
  date = {1991},
  series = {Monographs / {{Oxford University Committee}} for {{Archaeology}}},
  number = {33},
  publisher = {{Oxford Univ. Comm. for Archaeology}},
  location = {{Oxford}},
  isbn = {978-0-947816-33-9},
  langid = {english},
  pagetotal = {187}
}

@article{frerebeau2021,
  title = {Calibrer des âges radiocarbone avec R},
  author = {Frerebeau, Nicolas and Lebrun, Brice},
  date = {2021-03-24},
  journaltitle = {The Programming Historian en français},
  number = {3},
  issn = {2631-9462},
  doi = {10.46430/phfr0016},
  abstract = {Cette leçon vous apprend à calibrer des âges radiocarbone avec R. Après un rappel sur le principe du radiocarbone et les enjeux de la calibration, cette leçon explique pas à pas comment réaliser la calibration d'un ensemble de dates et comment explorer et présenter les résultats.},
  langid = {french}
}

@book{gandrud2018,
  title = {Reproducible {{Research}} with {{R}} and {{RStudio}}},
  author = {Gandrud, Christopher},
  date = {2018-09-03},
  edition = {2},
  publisher = {{Chapman and Hall/CRC}},
  doi = {10.1201/9781315382548},
  isbn = {978-1-315-38254-8},
  langid = {english}
}

@article{garrett1989,
  title = {The Chi-Square Plot: A Tool for Multivariate Outlier Recognition},
  shorttitle = {The Chi-Square Plot},
  author = {Garrett, Robert G.},
  date = {1989-04},
  journaltitle = {Journal of Geochemical Exploration},
  shortjournal = {Journal of Geochemical Exploration},
  volume = {32},
  number = {1-3},
  pages = {319--341},
  issn = {03756742},
  doi = {10.1016/0375-6742(89)90071-X},
  langid = {english}
}

@article{gentleman2007,
  title = {Statistical {{Analyses}} and {{Reproducible Research}}},
  author = {Gentleman, Robert and Temple Lang, Duncan},
  date = {2007-03},
  journaltitle = {Journal of Computational and Graphical Statistics},
  shortjournal = {Journal of Computational and Graphical Statistics},
  volume = {16},
  number = {1},
  pages = {1--23},
  issn = {1061-8600, 1537-2715},
  doi = {10.1198/106186007X178663},
  langid = {english}
}

@inproceedings{gillan1992,
  title = {Minimalism in Graphics},
  booktitle = {Posters and Short Talks of the 1992 {{SIGCHI}} Conference on {{Human}} Factors in Computing Systems  - {{CHI}} '92},
  author = {Gillan, Douglas J. and Richman, Edward and Neary, Michael},
  date = {1992},
  pages = {75},
  publisher = {{ACM Press}},
  location = {{Monterey, California}},
  doi = {10.1145/1125021.1125090},
  eventtitle = {Posters and Short Talks of the 1992 {{SIGCHI}} Conference},
  langid = {english}
}

@article{gillan1994,
  title = {Minimalism and the {{Syntax}} of {{Graphs}}},
  author = {Gillan, Douglas J. and Richman, Edward H.},
  date = {1994-12},
  journaltitle = {Human Factors: The Journal of the Human Factors and Ergonomics Society},
  shortjournal = {Hum Factors},
  volume = {36},
  number = {4},
  pages = {619--644},
  issn = {0018-7208, 1547-8181},
  doi = {10.1177/001872089403600405},
  abstract = {Four experiments examined Tufte's syntactic rule that graphs should have maximal data-ink ratios produced by erasing non-data-ink and redundant data-ink. In Experiment 1, the data-ink ratios of bar and line graphs affected the accuracy and response times for comparison, difference, and mean questions: the higher the data-ink ratio, the faster the response time and the greater the accuracy. Experiments 2 and 3 showed that the effects of ink in the syntactic elements of a graph depend on the location and function of the element: redundant ink in the indicators had limited effects on performance, pictorial backgrounds generally increased response time and decreased accuracy, y axis tick marks generally increased response time, and the y axis line and the x axis generally decreased response time. The effect of each graphical element was conditional on the type of graph and task and the presence of other graphical elements. The discussion focuses on psychological principles that may underlie the effects of each syntactic element.},
  langid = {english}
}

@book{gillespie2016,
  title = {Efficient {{R}} Programming: A Practical Guide to Smarter Programming},
  author = {Gillespie, Colin},
  date = {2016},
  publisher = {{O'Reilly Media}},
  location = {{Sebastopol, CA}},
  isbn = {978-1-4919-5078-4},
  langid = {english}
}

@article{goodman2016,
  title = {What Does Research Reproducibility Mean?},
  author = {Goodman, Steven N. and Fanelli, Daniele and Ioannidis, John P. A.},
  date = {2016-06},
  journaltitle = {Science Translational Medicine},
  shortjournal = {Sci. Transl. Med.},
  volume = {8},
  number = {341},
  issn = {1946-6234, 1946-6242},
  doi = {10.1126/scitranslmed.aaf5027},
  abstract = {The language and conceptual framework of “research reproducibility” are nonstandard and unsettled across the sciences.           ,              The language and conceptual framework of “research reproducibility” are nonstandard and unsettled across the sciences. In this Perspective, we review an array of explicit and implicit definitions of reproducibility and related terminology, and discuss how to avoid potential misunderstandings when these terms are used as a surrogate for “truth.”},
  langid = {english}
}

@book{grolemund2015,
  title = {Hands-on {{Programming}} with {{R}}},
  author = {Grolemund, Garrett},
  date = {2015},
  publisher = {{O'Reilly}},
  location = {{Cambridge}},
  isbn = {978-1-4493-5901-0},
  langid = {english},
  pagetotal = {232}
}

@article{hampton2013,
  title = {Big Data and the Future of Ecology},
  author = {Hampton, Stephanie E and Strasser, Carly A and Tewksbury, Joshua J and Gram, Wendy K and Budden, Amber E and Batcheller, Archer L and Duke, Clifford S and Porter, John H},
  date = {2013-04},
  journaltitle = {Frontiers in Ecology and the Environment},
  shortjournal = {Frontiers in Ecology and the Environment},
  volume = {11},
  number = {3},
  pages = {156--162},
  issn = {1540-9295},
  doi = {10.1890/120103},
  langid = {english}
}

@article{hampton2015,
  title = {The {{Tao}} of Open Science for Ecology},
  author = {Hampton, Stephanie E. and Anderson, Sean S. and Bagby, Sarah C. and Gries, Corinna and Han, Xueying and Hart, Edmund M. and Jones, Matthew B. and Lenhardt, W. Christopher and MacDonald, Andrew and Michener, William K. and Mudge, Joe and Pourmokhtarian, Afshin and Schildhauer, Mark P. and Woo, Kara H. and Zimmerman, Naupaka},
  date = {2015-07},
  journaltitle = {Ecosphere},
  shortjournal = {Ecosphere},
  volume = {6},
  number = {7},
  pages = {art120},
  issn = {2150-8925},
  doi = {10.1890/ES14-00402.1},
  langid = {english}
}

@book{harker1909,
  title = {The {{Natural History}} of {{Igneous Rocks}}},
  author = {Harker, Alfred},
  date = {1909},
  publisher = {{Macmillan}},
  location = {{New York}},
  langid = {english}
}

@inproceedings{heer2010,
  title = {Crowdsourcing Graphical Perception: Using Mechanical Turk to Assess Visualization Design},
  shorttitle = {Crowdsourcing Graphical Perception},
  booktitle = {Proceedings of the 28th International Conference on {{Human}} Factors in Computing Systems - {{CHI}} '10},
  author = {Heer, Jeffrey and Bostock, Michael},
  date = {2010},
  pages = {203},
  publisher = {{ACM Press}},
  location = {{Atlanta, Georgia, USA}},
  doi = {10.1145/1753326.1753357},
  eventtitle = {The 28th International Conference},
  isbn = {978-1-60558-929-9},
  langid = {english}
}

@article{herndon2014,
  title = {Does High Public Debt Consistently Stifle Economic Growth? {{A}} Critique of {{Reinhart}} and {{Rogoff}}},
  shorttitle = {Does High Public Debt Consistently Stifle Economic Growth?},
  author = {Herndon, T. and Ash, M. and Pollin, R.},
  date = {2014-03-01},
  journaltitle = {Cambridge Journal of Economics},
  shortjournal = {Cambridge Journal of Economics},
  volume = {38},
  number = {2},
  pages = {257--279},
  issn = {0309-166X, 1464-3545},
  doi = {10.1093/cje/bet075},
  langid = {english}
}

@incollection{hoefling2014,
  title = {Reproducible {{Research}} for {{Large-Scale Data Analysis}}},
  booktitle = {Implementing {{Reproducible Research}}},
  author = {Hoefling, Holger and Rossini, Anthony},
  editor = {Stodden, Victoria and Leisch, Friedrich and Peng, Roger D.},
  date = {2014},
  series = {The {{R Series}}},
  publisher = {{Chapman and Hall/CRC}},
  location = {{New York}},
  isbn = {978-0-367-57617-2},
  langid = {english}
}

@article{hullman2011,
  title = {Benefitting {{InfoVis}} with {{Visual Difficulties}}},
  author = {Hullman, J. and Adar, E. and Shah, P.},
  date = {2011-12},
  journaltitle = {IEEE Transactions on Visualization and Computer Graphics},
  shortjournal = {IEEE Trans. Visual. Comput. Graphics},
  volume = {17},
  number = {12},
  pages = {2213--2222},
  issn = {1077-2626},
  doi = {10.1109/TVCG.2011.175}
}

@article{hyndman1996,
  title = {Computing and {{Graphing Highest Density Regions}}},
  author = {Hyndman, Rob J.},
  date = {1996-05},
  journaltitle = {The American Statistician},
  shortjournal = {The American Statistician},
  volume = {50},
  number = {2},
  pages = {120},
  issn = {00031305},
  doi = {10.2307/2684423}
}

@inproceedings{inbar2007,
  title = {Minimalism in Information Visualization: Attitudes towards Maximizing the Data-Ink Ratio},
  shorttitle = {Minimalism in Information Visualization},
  booktitle = {Proceedings of the 14th {{European}} Conference on {{Cognitive}} Ergonomics Invent! Explore! - {{ECCE}} '07},
  author = {Inbar, Ohad and Tractinsky, Noam and Meyer, Joachim},
  date = {2007},
  pages = {185},
  publisher = {{ACM Press}},
  location = {{London, United Kingdom}},
  doi = {10.1145/1362550.1362587},
  eventtitle = {The 14th {{European}} Conference},
  isbn = {978-1-84799-849-1},
  langid = {english}
}

@article{ince2012,
  title = {The Case for Open Computer Programs},
  author = {Ince, Darrel C. and Hatton, Leslie and Graham-Cumming, John},
  date = {2012-02},
  journaltitle = {Nature},
  shortjournal = {Nature},
  volume = {482},
  number = {7386},
  pages = {485--488},
  issn = {0028-0836, 1476-4687},
  doi = {10.1038/nature10836},
  langid = {english}
}

@article{keeling2007,
  title = {A Comparative Study of the Reliability of Nine Statistical Software Packages},
  author = {Keeling, Kellie B. and Pavur, Robert J.},
  date = {2007-05},
  journaltitle = {Computational Statistics \& Data Analysis},
  shortjournal = {Computational Statistics \& Data Analysis},
  volume = {51},
  number = {8},
  pages = {3811--3831},
  issn = {01679473},
  doi = {10.1016/j.csda.2006.02.013},
  langid = {english}
}

@book{keller2000,
  title = {Applied Statistics with {{Microsoft Excel}}.},
  author = {Keller, Gerald},
  date = {2000},
  publisher = {{Duxbury}},
  location = {{Pacific Grove, CA}},
  isbn = {978-0-534-37112-8},
  langid = {english},
  pagetotal = {784}
}

@article{kelly1989,
  title = {The {{Data-Ink Ratio}} and {{Accuracy}} of {{Newspaper Graphs}}},
  author = {Kelly, James D.},
  date = {1989-09},
  journaltitle = {Journalism Quarterly},
  shortjournal = {Journalism Quarterly},
  volume = {66},
  number = {3},
  pages = {632--639},
  issn = {0022-5533},
  doi = {10.1177/107769908906600315},
  langid = {english}
}

@incollection{kleindienst2006,
  title = {On {{Naming Things}}: {{Behavioral Changes}} in the {{Later Middle}} to {{Earlier Late Pleistocene}}, {{Viewed From}} the {{Eastern Sahara}}},
  shorttitle = {On {{Naming Things}}},
  booktitle = {Transitions {{Before}} the {{Transition}}},
  author = {Kleindienst, M. R.},
  editor = {Hovers, Erella and Kuhn, Steven L.},
  date = {2006},
  series = {Interdisciplinary {{Contributions To Archaeology}}},
  pages = {13--28},
  publisher = {{Springer US}},
  location = {{Boston, MA}},
  doi = {10.1007/0-387-24661-4_2},
  isbn = {978-0-387-24658-1},
  langid = {english}
}

@article{knuth1984,
  title = {Literate {{Programming}}},
  author = {Knuth, Donald E.},
  date = {1984-02-01},
  journaltitle = {The Computer Journal},
  shortjournal = {The Computer Journal},
  volume = {27},
  number = {2},
  pages = {97--111},
  issn = {0010-4620, 1460-2067},
  doi = {10.1093/comjnl/27.2.97},
  langid = {english}
}

@book{knuth1992,
  title = {Literate Programming},
  author = {Knuth, Donald E.},
  date = {1992},
  series = {{{CSLI}} Lecture Notes},
  edition = {Repr.},
  number = {27},
  publisher = {{CSLI}},
  location = {{Stanford}},
  isbn = {978-0-937073-80-3},
  langid = {english},
  pagetotal = {368}
}

@article{koenker2009,
  title = {On Reproducible Econometric Research},
  author = {Koenker, Roger and Zeileis, Achim},
  date = {2009-08},
  journaltitle = {Journal of Applied Econometrics},
  shortjournal = {J. Appl. Econ.},
  volume = {24},
  number = {5},
  pages = {833--847},
  issn = {08837252},
  doi = {10.1002/jae.1083},
  langid = {english}
}

@inproceedings{kosara2010,
  title = {Do {{Mechanical Turks}} Dream of Square Pie Charts?},
  booktitle = {Proceedings of the 3rd {{BELIV}}'10 {{Workshop}} on {{BEyond}} Time and Errors: Novel {{evaLuation}} Methods for {{Information Visualization}} - {{BELIV}} '10},
  author = {Kosara, Robert and Ziemkiewicz, Caroline},
  date = {2010},
  pages = {63--70},
  publisher = {{ACM Press}},
  location = {{Atlanta, Georgia}},
  doi = {10.1145/2110192.2110202},
  eventtitle = {The 3rd {{BELIV}}'10 {{Workshop}}},
  isbn = {978-1-4503-0007-0},
  langid = {english}
}

@article{kosslyn1992,
  title = {Minding Information Graphics: {{Knowing}} a Little about Human Perception Can Help Make Your Graphics a Lot More Informative},
  author = {Kosslyn, S. M. and Chabris, C. F.},
  date = {1992-02},
  journaltitle = {Folio},
  volume = {21},
  pages = {69--71},
  langid = {english}
}

@thesis{kulla-mader2007,
  type = {mathesis},
  title = {Graphs via {{Ink}}: {{Understanding How}} the {{Amount}} of {{Non-Data-Ink}} in a {{Graph Affects Perception}} and {{Learning}}},
  author = {Kulla-Mader, Julia},
  date = {2007},
  institution = {{Department of Information and Library Science, University of North Carolina}},
  langid = {english}
}

@article{li2014,
  title = {Is "Chart Junk" Useful? {{An}} Extended Examination of Visual Embellishment},
  shorttitle = {Is "Chart Junk" Useful?},
  author = {Li, Huiyang and Moacdieh, Nadine},
  date = {2014-09},
  journaltitle = {Proceedings of the Human Factors and Ergonomics Society Annual Meeting},
  shortjournal = {Proceedings of the Human Factors and Ergonomics Society Annual Meeting},
  volume = {58},
  number = {1},
  pages = {1516--1520},
  issn = {2169-5067, 1071-1813},
  doi = {10.1177/1541931214581316},
  abstract = {Although many well-cited theories or guidelines for visualization design advocate ‘minimalism’, designers tend to include a wide variety of visual embellishments in their charts. Researchers have examined the effects of visual embellishment on comprehension and memorability of charts under specific conditions, such as charts with a small number of data points that were viewed with no time limit (Bateman et al., 2010). This paper extends previous studies and investigates the effects of visual embellishment given different time limits for viewing these charts. Similar to the Bateman et al. (2010) study, we compared embellished charts (selected from the work of Nigel Holmes) and plain, grayscale charts, but we limited our selection to those that consisted of larger data sets (10 or more data points). Results showed that the presence of a time limit affected comprehension and short-term recall performance, while the type of chart significantly affected short-term recall. In addition, the type of chart affected the time needed to review the chart while answering the questions. Participants found Holmes charts more attractive and memorable.},
  langid = {english}
}

@article{libby1949,
  title = {Age {{Determination}} by {{Radiocarbon Content}}: {{World-Wide Assay}} of {{Natural Radiocarbon}}},
  shorttitle = {Age {{Determination}} by {{Radiocarbon Content}}},
  author = {Libby, W. F. and Anderson, E. C. and Arnold, J. R.},
  date = {1949-03-04},
  journaltitle = {Science},
  volume = {109},
  number = {2827},
  pages = {227--228},
  issn = {0036-8075, 1095-9203},
  doi = {10.1126/science.109.2827.227},
  langid = {english}
}

@unpublished{libby1960,
  title = {Radiocarbon Dating},
  author = {Libby, Willard F.},
  date = {1960-12-12},
  url = {http://www.nobelprize.org/nobel_prizes/chemistry/laureates/1960/libby-lecture.html},
  eventtitle = {Nobel {{Lecture}}},
  langid = {english},
  venue = {{Stockholm}}
}

@book{long2019,
  title = {R Cookbook : Proven Recipes for Data Analysis, Statistics, and Graphics},
  author = {Long, J. D.},
  date = {2019},
  publisher = {{O'Reilly Media}},
  location = {{Sebastopol, CA}},
  isbn = {978-1-4920-4068-2},
  langid = {english}
}

@book{lovelace2020,
  title = {Geocomputation with r},
  author = {Lovelace, Robin},
  date = {2020},
  publisher = {{CRC Press}},
  location = {{Boca Raton, FL}},
  isbn = {978-0-367-67057-3},
  langid = {english}
}

@article{lowndes2017,
  title = {Our Path to Better Science in Less Time Using Open Data Science Tools},
  author = {Lowndes, Julia S. Stewart and Best, Benjamin D. and Scarborough, Courtney and Afflerbach, Jamie C. and Frazier, Melanie R. and O’Hara, Casey C. and Jiang, Ning and Halpern, Benjamin S.},
  date = {2017-06},
  journaltitle = {Nature Ecology \& Evolution},
  shortjournal = {Nat Ecol Evol},
  volume = {1},
  number = {6},
  pages = {0160},
  issn = {2397-334X},
  doi = {10.1038/s41559-017-0160},
  langid = {english}
}

@article{marwick2016,
  title = {Early Modern Human Lithic Technology from {{Jerimalai}}, {{East Timor}}},
  author = {Marwick, Ben and Clarkson, Chris and O'Connor, Sue and Collins, Sophie},
  date = {2016-12},
  journaltitle = {Journal of Human Evolution},
  shortjournal = {Journal of Human Evolution},
  volume = {101},
  pages = {45--64},
  issn = {00472484},
  doi = {10.1016/j.jhevol.2016.09.004},
  langid = {english}
}

@article{marwick2017,
  title = {Computational {{Reproducibility}} in {{Archaeological Research}}: {{Basic Principles}} and a {{Case Study}} of {{Their Implementation}}},
  shorttitle = {Computational {{Reproducibility}} in {{Archaeological Research}}},
  author = {Marwick, Ben},
  date = {2017-06},
  journaltitle = {Journal of Archaeological Method and Theory},
  shortjournal = {J Archaeol Method Theory},
  volume = {24},
  number = {2},
  pages = {424--450},
  issn = {1072-5369, 1573-7764},
  doi = {10.1007/s10816-015-9272-9},
  langid = {english}
}

@online{matloff2019,
  title = {An Opinionated View of the {{Tidyverse}} "Dialect" of the {{R}} Language},
  author = {Matloff, Norm},
  date = {2019},
  url = {https://github.com/matloff/TidyverseSkeptic},
  urldate = {2022-02-12},
  langid = {english},
  organization = {{TidyverseSkeptic}}
}

@article{mccullough2008,
  title = {On the Accuracy of Statistical Procedures in {{Microsoft Excel}} 2007},
  author = {McCullough, B.D. and Heiser, David A.},
  date = {2008-06},
  journaltitle = {Computational Statistics \& Data Analysis},
  shortjournal = {Computational Statistics \& Data Analysis},
  volume = {52},
  number = {10},
  pages = {4570--4578},
  issn = {01679473},
  doi = {10.1016/j.csda.2008.03.004},
  langid = {english}
}

@thesis{mcgurgan2015,
  type = {mathesis},
  title = {Data-{{Ink Ratio}} and {{Task Complexity}} in {{Graph Comprehension}}},
  author = {McGurgan, Kevin},
  date = {2015},
  institution = {{Department of Psychology, Rochester Institute of Technology}},
  langid = {english}
}

@article{meyer1997,
  title = {Multiple {{Factors}} That {{Determine Performance}} with {{Tables}} and {{Graphs}}},
  author = {Meyer, Joachim and Shinar, David and Leiser, David},
  date = {1997-06},
  journaltitle = {Human Factors: The Journal of the Human Factors and Ergonomics Society},
  shortjournal = {Hum Factors},
  volume = {39},
  number = {2},
  pages = {268--286},
  issn = {0018-7208, 1547-8181},
  doi = {10.1518/001872097778543921},
  abstract = {Two experiments assessed the relative efficiency of line graphs, bar graphs, and tables, applying a multiple-factors approach to study the effects of the type of the required information, the complexity of the data, and the user's familiarity with the display. information extraction tasks included reading exact values, comparing values, identifying trends, and reading maximum values. Tables led to faster responses for all tasks, and the accuracy for tables was equally high or higher than for graphs. Bar graphs and line graphs differed in their relative efficiency for the different tasks. The complexity of the data also affected the tasks differentially, as did prior familiarity with the display. Performance for most conditions improved with experience. Our findings demonstrate the benefits of a multiple-factors approach to the study of displays. Generalizations about the relative efficiency of displays and computational models of the task performance with displays must consider the various relevant factors if they are to serve as valid design aids.},
  langid = {english}
}

@article{millard2014,
  title = {Conventions for {{Reporting Radiocarbon Determinations}}},
  author = {Millard, Andrew R},
  date = {2014},
  journaltitle = {Radiocarbon},
  shortjournal = {Radiocarbon},
  volume = {56},
  number = {2},
  pages = {555--559},
  issn = {0033-8222, 1945-5755},
  doi = {10.2458/56.17455},
  abstract = {Current conventions for reporting radiocarbon determinations do not cover the reporting of calibrated dates. This article proposes revised conventions that have been endorsed by many               14               C scientists. For every determination included in a scientific paper, the following should apply: (1) the laboratory measurement should be reported as a conventional radiocarbon age in               14               C yr BP or a fractionation-corrected fraction modern (F               14               C) value; (2) the laboratory code for the determination should be included; and (3) the sample material dated, the pretreatment method applied, and quality control measurements should be reported. In addition, for every calibrated determination or modeled date, the following should be reported: (4) the calibration curve and any reservoir offset used; (5) the software used for calibration, including version number, the options and/or models used, and wherever possible a citation of a published description of the software; and (6) the calibrated date given as a range (or ranges) with an associated probability on a clearly identifiable calendar timescale.},
  langid = {english}
}

@book{millot2014,
  title = {Comprendre et réaliser les tests statistiques à l'aide de R - Manuel de biostatistique},
  shorttitle = {Comprendre et réaliser les tests statistiques à l'aide de R},
  author = {Millot, Gaël},
  date = {2014},
  edition = {troisième édition},
  publisher = {{De Boeck}},
  location = {{Louvain-la-Neuve}},
  abstract = {Ce livre s'adresse aux étudiants, médecins et chercheurs désirant réaliser des tests alors qu'ils débutent en statistique. Une approche simple et détaillée. Illustré par 76 figures et accompagné d'exercices avec correction, l'ouvrage aborde la statistique de la manière la plus simple qui soit, sans démonstration mathématique, mais en insistant sur les détails, afin de bien maîtriser toutes les subtilités des tests. Des notions essentielles traitées en profondeur. L'ouvrage explore des points fondamentaux en statistique : la check-list à effectuer avant de réaliser un test, la gestion des individus extrêmes, l'origine de la p value, la puissance ou la conclusion d'un test. Il explique comment choisir un test à partir de ses propres données. Il décrit 35 tests statistiques sous forme de fiches, dont 24 non paramétriques, ce qui couvre la plupart des tests à une ou deux variables observées. Il traite de toutes les subtilités des tests, comme les corrections de continuité, les corrections de Welch pour le test t et l'anova, ou les corrections de p value lors des comparaisons multiples. Il propose un exemple d'application de chaque test à l'aide de R, en incluant toutes les étapes du test, et notamment l'analyse graphique des données. R, le logiciel de référence. L'originalité de ce manuel est de proposer non seulement une explication très détaillée sur l'utilisation des tests les plus classiques, mais aussi la possibilité de réaliser ces tests à l'aide de R, logiciel de référence en statistique, gratuit, disponible sur Internet et compatible avec Windows, Mac OS et Linux. Ce livre parlera également à ceux qui ne souhaitent pas utiliser R, car tous les exemples d'application des tests sont réalisés à partir d'un même fichier de données, qui peut facilement être adapté à un autre logiciel de statistique.},
  isbn = {978-2-8041-8498-8},
  langid = {french},
  pagetotal = {806}
}

@article{morin2012,
  title = {Shining {{Light}} into {{Black Boxes}}},
  author = {Morin, A. and Urban, J. and Adams, P. D. and Foster, I. and Sali, A. and Baker, D. and Sliz, P.},
  date = {2012-04-13},
  journaltitle = {Science},
  shortjournal = {Science},
  volume = {336},
  number = {6078},
  pages = {159--160},
  issn = {0036-8075, 1095-9203},
  doi = {10.1126/science.1218263},
  abstract = {Funders, publishers, and research institutions must act to ensure that research computer code is made widely available.           ,              The publication and open exchange of knowledge and material form the backbone of scientific progress and reproducibility and are obligatory for publicly funded research. Despite increasing reliance on computing in every domain of scientific endeavor, the computer source code critical to understanding and evaluating computer programs is commonly withheld, effectively rendering these programs “black boxes” in the research work flow. Exempting from basic publication and disclosure standards such a ubiquitous category of research tool carries substantial negative consequences. Eliminating this disparity will require concerted policy action by funding agencies and journal publishers, as well as changes in the way research institutions receiving public funds manage their intellectual property (IP).},
  langid = {english}
}

@online{munroe2009,
  title = {Correlation},
  author = {Munroe, Randall},
  date = {2009-03-06},
  url = {https://xkcd.com/552/},
  langid = {english},
  organization = {{xkcd}}
}

@online{munroe2013,
  title = {Log {{Scale}}},
  author = {Munroe, Randall},
  date = {2013-01-18},
  url = {https://xkcd.com/1162/},
  langid = {english},
  organization = {{xkcd}}
}

@online{munroe2014,
  title = {Documents},
  author = {Munroe, Randall},
  date = {2014-12-12},
  url = {https://xkcd.com/1459/},
  langid = {english},
  organization = {{xkcd}}
}

@online{munroe2018,
  title = {Curve-{{Fitting}}},
  author = {Munroe, Randall},
  date = {2018-09-19},
  url = {https://xkcd.com/2048/},
  langid = {english},
  organization = {{xkcd}}
}

@online{munroe2019,
  title = {.{{NORM Normal File Format}}},
  author = {Munroe, Randall},
  date = {2019-02-25},
  url = {https://xkcd.com/2116/},
  langid = {english},
  organization = {{xkcd}}
}

@online{munroe2020,
  title = {Dependency},
  author = {Munroe, Randall},
  date = {2020-08-17},
  url = {https://xkcd.com/2347/},
  langid = {english},
  organization = {{xkcd}}
}

@online{munroe2022,
  title = {Sea {{Chase}}},
  author = {Munroe, Randall},
  date = {2022-02-04},
  url = {https://xkcd.com/2577/},
  langid = {english},
  organization = {{xkcd}}
}

@book{murrell2019,
  title = {R Graphics},
  author = {Murrell, Paul},
  date = {2019},
  publisher = {{CRC Press, Taylor \& Francis Group}},
  location = {{Boca Raton}},
  isbn = {978-1-4987-8905-9},
  langid = {english}
}

@article{noble2009,
  title = {A {{Quick Guide}} to {{Organizing Computational Biology Projects}}},
  author = {Noble, William Stafford},
  editor = {Lewitter, Fran},
  date = {2009-07-31},
  journaltitle = {PLoS Computational Biology},
  shortjournal = {PLoS Comput Biol},
  volume = {5},
  number = {7},
  pages = {e1000424},
  issn = {1553-7358},
  doi = {10.1371/journal.pcbi.1000424},
  langid = {english}
}

@article{nosek2015,
  title = {Promoting an Open Research Culture},
  author = {Nosek, B. A. and Alter, G. and Banks, G. C. and Borsboom, D. and Bowman, S. D. and Breckler, S. J. and Buck, S. and Chambers, C. D. and Chin, G. and Christensen, G. and Contestabile, M. and Dafoe, A. and Eich, E. and Freese, J. and Glennerster, R. and Goroff, D. and Green, D. P. and Hesse, B. and Humphreys, M. and Ishiyama, J. and Karlan, D. and Kraut, A. and Lupia, A. and Mabry, P. and Madon, T. and Malhotra, N. and Mayo-Wilson, E. and McNutt, M. and Miguel, E. and Paluck, E. Levy and Simonsohn, U. and Soderberg, C. and Spellman, B. A. and Turitto, J. and VandenBos, G. and Vazire, S. and Wagenmakers, E. J. and Wilson, R. and Yarkoni, T.},
  date = {2015-06-26},
  journaltitle = {Science},
  shortjournal = {Science},
  volume = {348},
  number = {6242},
  pages = {1422--1425},
  issn = {0036-8075, 1095-9203},
  doi = {10.1126/science.aab2374},
  abstract = {Author guidelines for journals could help to promote transparency, openness, and reproducibility           ,                             Transparency, openness, and reproducibility are readily recognized as vital features of science (                                1                              ,                                2                              ). When asked, most scientists embrace these features as disciplinary norms and values (                                3                              ). Therefore, one might expect that these valued features would be routine in daily practice. Yet, a growing body of evidence suggests that this is not the case (                                4                              –                                6                              ).},
  langid = {english}
}

@book{obrien2002,
  title = {Seriation, {{Stratigraphy}}, and {{Index Fossils}}: {{The Backbone}} of {{Archaeological Dating}}},
  shorttitle = {Seriation, {{Stratigraphy}}, and {{Index Fossils}}},
  author = {O'Brien, Michael J and Lyman, R. Lee},
  date = {2002},
  publisher = {{Springer}},
  location = {{Dordrecht}},
  isbn = {978-0-306-47168-1},
  langid = {english}
}

@article{pearson1896,
  title = {Mathematical {{Contributions}} to the {{Theory}} of {{Evolution}} – {{On}} a {{Form}} of {{Spurious Correlation Which May Arise When Indices Are Used}} in the {{Measurement}} of {{Organs}}},
  shorttitle = {Mathematical {{Contributions}} to the {{Theory}} of {{Evolution}}},
  author = {Pearson, Karl},
  date = {1896},
  journaltitle = {Proceedings of the Royal Society of London (1854-1905)},
  volume = {60},
  number = {1},
  pages = {489--498},
  issn = {0370-1662},
  doi = {10.1098/rspl.1896.0076},
  langid = {english}
}

@article{plesser2018,
  title = {Reproducibility vs. {{Replicability}}: {{A Brief History}} of a {{Confused Terminology}}},
  shorttitle = {Reproducibility vs. {{Replicability}}},
  author = {Plesser, Hans E.},
  date = {2018-01-18},
  journaltitle = {Frontiers in Neuroinformatics},
  shortjournal = {Front. Neuroinform.},
  volume = {11},
  pages = {76},
  issn = {1662-5196},
  doi = {10.3389/fninf.2017.00076}
}

@article{prinz2011,
  title = {Believe It or Not: How Much Can We Rely on Published Data on Potential Drug Targets?},
  shorttitle = {Believe It or Not},
  author = {Prinz, Florian and Schlange, Thomas and Asadullah, Khusru},
  date = {2011-09},
  journaltitle = {Nature Reviews Drug Discovery},
  shortjournal = {Nat Rev Drug Discov},
  volume = {10},
  number = {9},
  pages = {712--712},
  issn = {1474-1776, 1474-1784},
  doi = {10.1038/nrd3439-c1},
  langid = {english}
}

@article{racine2012,
  title = {{{RStudio}}: {{A Platform-Independent IDE}} for {{R}} and {{Sweave}}: {{SOFTWARE REVIEW}}},
  shorttitle = {{{RStudio}}},
  author = {Racine, Jeffrey S.},
  date = {2012-01},
  journaltitle = {Journal of Applied Econometrics},
  shortjournal = {J. Appl. Econ.},
  volume = {27},
  number = {1},
  pages = {167--172},
  issn = {08837252},
  doi = {10.1002/jae.1278},
  langid = {english}
}

@article{rangecroft2003,
  title = {As Easy as Pie},
  author = {Rangecroft, Margaret},
  date = {2003-11},
  journaltitle = {Behaviour \& Information Technology},
  shortjournal = {Behaviour \& Information Technology},
  volume = {22},
  number = {6},
  pages = {421--426},
  issn = {0144-929X, 1362-3001},
  doi = {10.1080/01449290310001615437},
  langid = {english}
}

@article{reichman2011,
  title = {Challenges and {{Opportunities}} of {{Open Data}} in {{Ecology}}},
  author = {Reichman, O. J. and Jones, Matthew B. and Schildhauer, Mark P.},
  date = {2011-02-11},
  journaltitle = {Science},
  shortjournal = {Science},
  volume = {331},
  number = {6018},
  pages = {703--705},
  issn = {0036-8075, 1095-9203},
  doi = {10.1126/science.1197962},
  abstract = {Ecology is a synthetic discipline benefiting from open access to data from the earth, life, and social sciences. Technological challenges exist, however, due to the dispersed and heterogeneous nature of these data. Standardization of methods and development of robust metadata can increase data access but are not sufficient. Reproducibility of analyses is also important, and executable workflows are addressing this issue by capturing data provenance. Sociological challenges, including inadequate rewards for sharing data, must also be resolved. The establishment of well-curated, federated data repositories will provide a means to preserve data while promoting attribution and acknowledgement of its use.},
  langid = {english}
}

@article{reimann2005,
  title = {Background and Threshold: Critical Comparison of Methods of Determination},
  shorttitle = {Background and Threshold},
  author = {Reimann, Clemens and Filzmoser, Peter and Garrett, Robert G.},
  date = {2005-06},
  journaltitle = {Science of The Total Environment},
  shortjournal = {Science of The Total Environment},
  volume = {346},
  number = {1-3},
  pages = {1--16},
  issn = {00489697},
  doi = {10.1016/j.scitotenv.2004.11.023},
  langid = {english}
}

@article{reimer2009,
  title = {{{IntCal09}} and {{Marine09 Radiocarbon Age Calibration Curves}}, 0–50,000 {{Years}} Cal {{BP}}},
  author = {Reimer, P. J. and Baillie, M. G. L. and Bard, E. and Bayliss, A. and Beck, J. W. and Blackwell, P G and Bronk Ramsey, C and Buck, C E and Burr, G S and Edwards, R L and Friedrich, M and Grootes, P M and Guilderson, T P and Hajdas, I and Heaton, T J and Hogg, A G and Hughen, K A and Kaiser, K F and Kromer, B and McCormac, F G and Manning, S W and Reimer, R W and Richards, D A and Southon, J R and Talamo, S and Turney, C S M and family=Plicht, given=J, prefix=van der, useprefix=true and Weyhenmeyer, C E},
  date = {2009},
  journaltitle = {Radiocarbon},
  volume = {51},
  number = {4},
  pages = {1111--1150},
  issn = {0033-8222, 1945-5755},
  doi = {10.1017/S0033822200034202},
  langid = {english}
}

@article{reimer2013,
  title = {{{IntCal13}} and {{Marine13 Radiocarbon Age Calibration Curves}} 0-50,000 {{Years}} Cal {{BP}}},
  author = {Reimer, Paula J. and Bard, Edouard and Bayliss, Alex and Beck, J. Warren and Blackwell, Paul G. and Bronk Ramsey, Christopher and Buck, Caitlin E. and Cheng, Hai and Edwards, R. Lawrence and Friedrich, Michael and Grootes, Pieter M. and Guilderson, Thomas P. and Haflidason, Haflidi and Hajdas, Irka and Hatté, Christine and Heaton, Timothy J. and Hoffmann, Dirk L. and Hogg, Alan G. and Hughen, Konrad A. and Kaiser, K. Felix and Kromer, Bernd and Manning, Sturt W. and Niu, Mu and Reimer, Ron W. and Richards, David A. and Scott, E. Marian and Southon, John R. and Staff, Richard A. and Turney, Christian S. M. and family=Plicht, given=Johannes, prefix=van der, useprefix=true},
  date = {2013-11},
  journaltitle = {Radiocarbon},
  volume = {55},
  number = {4},
  pages = {1869--1887},
  issn = {00338222},
  doi = {10.2458/azu_js_rc.55.16947},
  abstract = {The IntCal09 and Marine09 radiocarbon calibration curves have been revised utilizing newly available and updated data sets from 14C measurements on tree rings, plant macrofossils, speleothems, corals, and foraminifera. The calibration curves were derived from the data using the random walk model (RWM) used to generate IntCal09 and Marine09, which has been revised to account for additional uncertainties and error structures. The new curves were ratified at the 21st International Radiocarbon conference in July 2012 and are available as Supplemental Material at www.radiocarbon.org. The database can be accessed at http://intcal.qub.ac.uk/intcal13/.}
}

@article{reimer2020,
  title = {The {{IntCal20 Northern Hemisphere Radiocarbon Age Calibration Curve}} (0-55 Cal {{kBP}})},
  author = {Reimer, Paula J. and Austin, William E. N. and Bard, Edouard and Bayliss, Alex and Blackwell, Paul G. and Bronk Ramsey, Christopher and Butzin, Martin and Cheng, Hai and Edwards, R Lawrence and Friedrich, Michael and Grootes, Pieter M and Guilderson, Thomas P and Hajdas, Irka and Heaton, Timothy J and Hogg, Alan G and Hughen, Konrad A and Kromer, Bernd and Manning, Sturt W and Muscheler, Raimund and Palmer, Jonathan G and Pearson, Charlotte and family=Plicht, given=Johannes, prefix=van der, useprefix=true and Reimer, Ron W and Richards, David A and Scott, E Marian and Southon, John R and Turney, Christian S M and Wacker, Lukas and Adolphi, Florian and Büntgen, Ulf and Capano, Manuela and Fahrni, Simon M and Fogtmann-Schulz, Alexandra and Friedrich, Ronny and Köhler, Peter and Kudsk, Sabrina and Miyake, Fusa and Olsen, Jesper and Reinig, Frederick and Sakamoto, Minoru and Sookdeo, Adam and Talamo, Sahra},
  date = {2020},
  journaltitle = {Radiocarbon},
  pages = {1--33},
  issn = {0033-8222, 1945-5755},
  doi = {10.1017/RDC.2020.41},
  langid = {english}
}

@book{robbins2005,
  title = {Creating More Effective Graphs},
  author = {Robbins, Naomi B.},
  date = {2005},
  publisher = {{Wiley-Interscience}},
  location = {{Hoboken, N.J}},
  isbn = {978-0-471-27402-5},
  langid = {english},
  pagetotal = {402}
}

@article{rossini2003,
  title = {On the {{Edge}}: {{Statistics}} \& {{Computing}}: {{Reproducible Statistical Research}}},
  shorttitle = {On the {{Edge}}},
  author = {Rossini, A. J. and Lumley, Thomas and Leisch, Friedrich},
  date = {2003-03},
  journaltitle = {CHANCE},
  shortjournal = {CHANCE},
  volume = {16},
  number = {2},
  pages = {41--45},
  issn = {0933-2480, 1867-2280},
  doi = {10.1080/09332480.2003.10554848},
  langid = {english}
}

@article{rousseeuw1990,
  title = {Unmasking {{Multivariate Outliers}} and {{Leverage Points}}},
  author = {Rousseeuw, Peter J. and family=Zomeren, given=Bert C., prefix=van, useprefix=true},
  date = {1990-09},
  journaltitle = {Journal of the American Statistical Association},
  shortjournal = {Journal of the American Statistical Association},
  volume = {85},
  number = {411},
  pages = {633--639},
  issn = {0162-1459, 1537-274X},
  doi = {10.1080/01621459.1990.10474920},
  langid = {english}
}

@article{sandve2013,
  title = {Ten {{Simple Rules}} for {{Reproducible Computational Research}}},
  author = {Sandve, Geir Kjetil and Nekrutenko, Anton and Taylor, James and Hovig, Eivind},
  editor = {Bourne, Philip E.},
  date = {2013-10-24},
  journaltitle = {PLoS Computational Biology},
  shortjournal = {PLoS Comput Biol},
  volume = {9},
  number = {10},
  pages = {e1003285},
  issn = {1553-7358},
  doi = {10.1371/journal.pcbi.1003285},
  langid = {english}
}

@article{schmidt2020,
  title = {Tool-{{Driven Revolutions}} in {{Archaeological Science}}},
  author = {Schmidt, Sophie C. and Marwick, Ben},
  date = {2020-01-28},
  journaltitle = {Journal of Computer Applications in Archaeology},
  volume = {3},
  number = {1},
  pages = {18--32},
  issn = {2514-8362},
  doi = {10.5334/jcaa.29},
  langid = {english}
}

@article{schonlau2012,
  title = {Comprehension of {{Graphs}} and {{Tables Depend}} on the {{Task}}: {{Empirical Evidence}} from {{Two Web-Based Studies}}},
  shorttitle = {Comprehension of {{Graphs}} and {{Tables Depend}} on the {{Task}}},
  author = {Schonlau, Matthias and Peters, Ellen},
  date = {2012-01-03},
  journaltitle = {Statistics, Politics, and Policy},
  volume = {3},
  number = {2},
  issn = {2151-7509},
  doi = {10.1515/2151-7509.1054}
}

@article{schulte2012,
  title = {A {{Multi-Language Computing Environment}} for {{Literate Programming}} and {{Reproducible Research}}},
  author = {Schulte, Eric and Davison, Dan and Dye, Thomas and Dominik, Carsten},
  date = {2012},
  journaltitle = {Journal of Statistical Software},
  shortjournal = {J. Stat. Soft.},
  volume = {46},
  number = {3},
  issn = {1548-7660},
  doi = {10.18637/jss.v046.i03},
  langid = {english}
}

@article{scott2007,
  title = {Error and {{Uncertainty}} in {{Radiocarbon Measurements}}},
  author = {Scott, E Marian and Cook, Gordon T and Naysmith, Philip},
  date = {2007},
  journaltitle = {Radiocarbon},
  volume = {49},
  number = {2},
  pages = {427--440},
  issn = {0033-8222, 1945-5755},
  doi = {10.1017/S0033822200042351},
  langid = {english}
}

@book{shennan2004,
  title = {Quantifying Archaeology},
  author = {Shennan, Stephen},
  date = {2004},
  publisher = {{Edinburgh University Press}},
  location = {{Edinburgh}},
  isbn = {978-0-7486-0791-4},
  langid = {english},
  pagetotal = {433}
}

@book{silge2017,
  title = {Text Mining with {{R}}: A Tidy Approach},
  author = {Silge, Julia},
  date = {2017},
  publisher = {{O'Reilly Media}},
  location = {{Sebastopol, CA}},
  isbn = {978-1-4919-8165-8},
  langid = {english}
}

@article{simkin1987,
  title = {An {{Information-Processing Analysis}} of {{Graph Perception}}},
  author = {Simkin, David and Hastie, Reid},
  date = {1987-06},
  journaltitle = {Journal of the American Statistical Association},
  shortjournal = {Journal of the American Statistical Association},
  volume = {82},
  number = {398},
  pages = {454--465},
  issn = {0162-1459, 1537-274X},
  doi = {10.1080/01621459.1987.10478448},
  langid = {english}
}

@book{south1977,
  title = {Method and {{Theory}} in {{Historical Archaeology}}},
  author = {South, S. A.},
  date = {1977},
  series = {Studies in Archeology},
  publisher = {{Academic Press}},
  location = {{New York}},
  isbn = {0-12-655750-0},
  langid = {english}
}

@article{spence1990,
  title = {Visual Psychophysics of Simple Graphical Elements.},
  author = {Spence, Ian},
  date = {1990},
  journaltitle = {Journal of Experimental Psychology: Human Perception and Performance},
  shortjournal = {Journal of Experimental Psychology: Human Perception and Performance},
  volume = {16},
  number = {4},
  pages = {683--692},
  issn = {1939-1277, 0096-1523},
  doi = {10.1037/0096-1523.16.4.683},
  langid = {english}
}

@article{spence1991,
  title = {Displaying Proportions and Percentages},
  author = {Spence, Ian and Lewandowsky, Stephan},
  date = {1991-01},
  journaltitle = {Applied Cognitive Psychology},
  shortjournal = {Appl. Cognit. Psychol.},
  volume = {5},
  number = {1},
  pages = {61--77},
  issn = {08884080, 10990720},
  doi = {10.1002/acp.2350050106},
  langid = {english}
}

@article{spence2005,
  title = {No {{Humble Pie}}: {{The Origins}} and {{Usage}} of a {{Statistical Chart}}},
  shorttitle = {No {{Humble Pie}}},
  author = {Spence, Ian},
  date = {2005-12},
  journaltitle = {Journal of Educational and Behavioral Statistics},
  shortjournal = {Journal of Educational and Behavioral Statistics},
  volume = {30},
  number = {4},
  pages = {353--368},
  issn = {1076-9986, 1935-1054},
  doi = {10.3102/10769986030004353},
  abstract = {William Playfair’s pie chart is more than 200 years old and yet its intellectual origins remain obscure. The inspiration likely derived from the logic diagrams of Llull, Bruno, Leibniz, and Euler, which were familiar to William because of the instruction of his mathematician brother John. The pie chart is broadly popular but—despite its common appeal—most experts have not been seduced, and the academy has advised avoidance; nonetheless, the masses have chosen to ignore this advice. This commentary discusses the origins of the pie chart and the appropriate uses of the form.},
  langid = {english}
}

@article{steen2013,
  title = {Why {{Has}} the {{Number}} of {{Scientific Retractions Increased}}?},
  author = {Steen, R. Grant and Casadevall, Arturo and Fang, Ferric C.},
  editor = {Derrick, Gemma Elizabeth},
  date = {2013-07-08},
  journaltitle = {PLoS ONE},
  shortjournal = {PLoS ONE},
  volume = {8},
  number = {7},
  pages = {e68397},
  issn = {1932-6203},
  doi = {10.1371/journal.pone.0068397},
  langid = {english}
}

@book{stodden2014,
  title = {Implementing {{Reproducible Research}}},
  author = {Stodden, Victoria and Leisch, Friedrich and Peng, Roger D.},
  date = {2014},
  series = {The {{R Series}}},
  publisher = {{Chapman and Hall/CRC}},
  location = {{New York}},
  abstract = {In computational science, reproducibility requires that researchers make code and data available to others so that the data can be analyzed in a similar manner as in the original publication. Code must be available to be distributed, data must be accessible in a readable format, and a platform must be available for widely distributing the data and code. In addition, both data and code need to be licensed permissively enough so that others can reproduce the work without a substantial legal burden.},
  isbn = {978-0-367-57617-2},
  langid = {english},
  pagetotal = {448}
}

@book{strange2007,
  title = {Smoke and Mirrors: How to Bend Facts and Figures to Your Advantage},
  shorttitle = {Smoke and Mirrors},
  author = {Strange, Nicholas},
  date = {2007},
  publisher = {{A. \& C. Black}},
  location = {{London}},
  isbn = {978-0-7136-7924-3},
  langid = {english},
  pagetotal = {204}
}

@article{strasser2012,
  title = {The Fractured Lab Notebook: Undergraduates and Ecological Data Management Training in the {{United States}}},
  shorttitle = {The Fractured Lab Notebook},
  author = {Strasser, C. A. and Hampton, S. E.},
  date = {2012-12},
  journaltitle = {Ecosphere},
  shortjournal = {Ecosphere},
  volume = {3},
  number = {12},
  pages = {art116},
  issn = {2150-8925},
  doi = {10.1890/ES12-00139.1},
  langid = {english}
}

@article{sutter2015,
  title = {Practical Guidance for Integrating Data Management into Long‐term Ecological Monitoring Projects},
  author = {Sutter, Robert D. and Wainscott, Susan B. and Boetsch, John R. and Palmer, Craig J. and Rugg, David J.},
  date = {2015-09},
  journaltitle = {Wildlife Society Bulletin},
  shortjournal = {Wildl. Soc. Bull.},
  volume = {39},
  number = {3},
  pages = {451--463},
  issn = {1938-5463, 1938-5463},
  doi = {10.1002/wsb.548},
  langid = {english}
}

@article{talbot2014,
  title = {Four {{Experiments}} on the {{Perception}} of {{Bar Charts}}},
  author = {Talbot, Justin and Setlur, Vidya and Anand, Anushka},
  date = {2014-12-31},
  journaltitle = {IEEE Transactions on Visualization and Computer Graphics},
  shortjournal = {IEEE Trans. Visual. Comput. Graphics},
  volume = {20},
  number = {12},
  pages = {2152--2160},
  issn = {1077-2626},
  doi = {10.1109/TVCG.2014.2346320}
}

@article{terry2000,
  title = {Quantitative Phosphorus Measurement: {{A}} Field Test Procedure for Archaeological Site Analysis at {{Piedras Negras}}, {{Guatemala}}},
  shorttitle = {Quantitative Phosphorus Measurement},
  author = {Terry, Richard E. and Nelson, Sheldon D. and Carr, Jared and Parnell, Jacob and Hardin, Perry J. and Jackson, Mark W. and Houston, Stephen D.},
  date = {2000-02},
  journaltitle = {Geoarchaeology},
  shortjournal = {Geoarchaeology},
  volume = {15},
  number = {2},
  pages = {151--166},
  issn = {0883-6353, 1520-6548},
  doi = {10.1002/(SICI)1520-6548(200002)15:2<151::AID-GEA3>3.0.CO;2-T},
  langid = {english}
}

@article{thieme2018,
  title = {R Generation},
  author = {Thieme, Nick},
  date = {2018-08},
  journaltitle = {Significance},
  shortjournal = {Significance},
  volume = {15},
  number = {4},
  pages = {14--19},
  issn = {17409705},
  doi = {10.1111/j.1740-9713.2018.01169.x},
  langid = {english}
}

@article{tufte1990,
  title = {Data-{{Ink Maximization}} and {{Graphical Design}}},
  author = {Tufte, E. R.},
  date = {1990-06},
  journaltitle = {Oikos},
  shortjournal = {Oikos},
  volume = {58},
  number = {2},
  pages = {130},
  issn = {00301299},
  doi = {10.2307/3545420},
  langid = {english}
}

@book{tufte2001,
  title = {The Visual Display of Quantitative Information},
  author = {Tufte, Edward R.},
  date = {2001},
  edition = {2nd ed},
  publisher = {{Graphics Press}},
  location = {{Cheshire, Conn}},
  isbn = {978-0-9613921-4-7},
  langid = {english},
  pagetotal = {197}
}

@article{tukey1990,
  title = {Data-{{Based Graphics}}: {{Visual Display}} in the {{Decades}} to {{Come}}},
  author = {Tukey, John W.},
  date = {1990-08},
  journaltitle = {Statistical Science},
  volume = {5},
  number = {3},
  eprint = {2245820},
  eprinttype = {jstor},
  pages = {327--339},
  url = {https://www.jstor.org/stable/2245820},
  langid = {english}
}

@book{vandenboogaart2013,
  title = {Analyzing {{Compositional Data}} with {{R}}},
  author = {family=Boogaart, given=K. Gerald, prefix=van den, useprefix=true and Tolosana-Delgado, Raimon},
  date = {2013},
  series = {Use {{R}}!},
  publisher = {{Springer-Verlag}},
  location = {{Berlin Heidelberg}},
  doi = {10.1007/978-3-642-36809-7},
  isbn = {978-3-642-36808-0},
  langid = {english},
  pagetotal = {285}
}

@article{vannoorden2011,
  title = {Science Publishing: {{The}} Trouble with Retractions},
  shorttitle = {Science Publishing},
  author = {Van Noorden, Richard},
  date = {2011-10},
  journaltitle = {Nature},
  shortjournal = {Nature},
  volume = {478},
  number = {7367},
  pages = {26--28},
  issn = {0028-0836, 1476-4687},
  doi = {10.1038/478026a},
  langid = {english}
}

@book{vanpool2010,
  title = {Quantitative {{Analysis}} in {{Archaeology}}},
  shorttitle = {Quantitative {{Analysis}} in {{Archaeology}}},
  author = {VanPool, Todd L. and Leonard, Robert D.},
  date = {2010-11-22},
  publisher = {{Wiley-Blackwell}},
  location = {{Oxford, UK}},
  doi = {10.1002/9781444390155},
  isbn = {978-1-4443-9015-5},
  langid = {english}
}

@book{verzani2012,
  title = {Getting Started with {{RStudio}}},
  author = {Verzani, John},
  date = {2012},
  edition = {2. release},
  publisher = {{O'Reilly}},
  location = {{Sebastopol, Calif.}},
  isbn = {978-1-4493-0903-9},
  langid = {english},
  pagetotal = {83}
}

@article{volk2014,
  title = {Why Is {{Data Sharing}} in {{Collaborative Natural Resource Efforts}} so {{Hard}} and {{What}} Can {{We Do}} to {{Improve}} It?},
  author = {Volk, Carol J. and Lucero, Yasmin and Barnas, Katie},
  date = {2014-05},
  journaltitle = {Environmental Management},
  shortjournal = {Environmental Management},
  volume = {53},
  number = {5},
  pages = {883--893},
  issn = {0364-152X, 1432-1009},
  doi = {10.1007/s00267-014-0258-2},
  langid = {english}
}

@article{white2013,
  title = {Nine Simple Ways to Make It Easier to (Re)Use Your Data},
  author = {White, Ethan and Baldridge, Elita and Brym, Zachary and Locey, Kenneth and McGlinn, Daniel and Supp, Sarah},
  date = {2013},
  journaltitle = {Ideas in Ecology and Evolution},
  shortjournal = {IEE},
  volume = {6},
  number = {2},
  issn = {19183178},
  doi = {10.4033/iee.2013.6b.6.f}
}

@article{wickham2014,
  title = {Tidy Data},
  author = {Wickham, Hadley},
  date = {2014},
  journaltitle = {Journal of Statistical Software},
  volume = {59},
  number = {10},
  pages = {1--23},
  doi = {10.18637/jss.v059.i10},
  abstract = {A huge amount of effort is spent cleaning data to get it ready for analysis, but there has been little research on how to make data cleaning as easy and effective as possible. This paper tackles a small, but important, component of data cleaning: data tidying. Tidy datasets are easy to manipulate, model and visualize, and have a specific structure: each variable is a column, each observation is a row, and each type of observational unit is a table. This framework makes it easy to tidy messy datasets because only a small set of tools are needed to deal with a wide range of un-tidy datasets. This structure also makes it easier to develop tidy tools for data analysis, tools that both input and output tidy datasets. The advantages of a consistent data structure and matching tools are demonstrated with a case study free from mundane data manipulation chores.},
  langid = {english}
}

@book{wickham2015,
  title = {R Packages},
  author = {Wickham, Hadley},
  date = {2015},
  publisher = {{O'Reilly Media}},
  location = {{Sebastopol, CA}},
  isbn = {978-1-4919-1059-7},
  langid = {english}
}

@book{wickham2016,
  title = {R for Data Science: Import, Tidy, Transform, Visualize, and Model Data},
  author = {Wickham, Hadley},
  date = {2016},
  publisher = {{O'Reilly Media}},
  location = {{Sebastopol, CA}},
  isbn = {978-1-4919-1039-9},
  langid = {english}
}

@book{wickham2019,
  title = {Advanced r},
  author = {Wickham, Hadley},
  date = {2019},
  publisher = {{Taylor \& Francis, CRC Press}},
  location = {{Boca Raton}},
  isbn = {978-0-8153-8457-1},
  langid = {english}
}

@article{wickham2019b,
  title = {Welcome to the Tidyverse},
  author = {Wickham, Hadley and Averick, Mara and Bryan, Jennifer and Chang, Winston and McGowan, Lucy D'Agostino and François, Romain and Grolemund, Garrett and Hayes, Alex and Henry, Lionel and Hester, Jim and Kuhn, Max and Pedersen, Thomas Lin and Miller, Evan and Bache, Stephan Milton and Müller, Kirill and Ooms, Jeroen and Robinson, David and Seidel, Dana Paige and Spinu, Vitalie and Takahashi, Kohske and Vaughan, Davis and Wilke, Claus and Woo, Kara and Yutani, Hiroaki},
  date = {2019},
  journaltitle = {Journal of Open Source Software},
  volume = {4},
  number = {43},
  pages = {1686},
  doi = {10.21105/joss.01686},
  langid = {english}
}

@book{wilke2019,
  title = {Fundamentals of Data Visualization: A Primer on Making Informative and Compelling Figures},
  author = {Wilke, Claus O.},
  date = {2019},
  publisher = {{O'Reilly Media, Inc}},
  location = {{Sebastopol, CA}},
  isbn = {978-1-4920-3108-6},
  langid = {english}
}

@book{wilkinson2005,
  title = {The {{Grammar}} of {{Graphics}}},
  author = {Wilkinson, Leland},
  date = {2005},
  series = {Statistics and {{Computing}}},
  edition = {seconde édition},
  publisher = {{Springer-Verlag}},
  location = {{New York}},
  doi = {10.1007/0-387-28695-0},
  isbn = {978-0-387-24544-7},
  langid = {english}
}

@article{wilson2014,
  title = {Best {{Practices}} for {{Scientific Computing}}},
  author = {Wilson, Greg and Aruliah, D. A. and Brown, C. Titus and Chue Hong, Neil P. and Davis, Matt and Guy, Richard T. and Haddock, Steven H. D. and Huff, Kathryn D. and Mitchell, Ian M. and Plumbley, Mark D. and Waugh, Ben and White, Ethan P. and Wilson, Paul},
  editor = {Eisen, Jonathan A.},
  date = {2014-01-07},
  journaltitle = {PLoS Biology},
  shortjournal = {PLoS Biol},
  volume = {12},
  number = {1},
  pages = {e1001745},
  issn = {1545-7885},
  doi = {10.1371/journal.pbio.1001745},
  langid = {english}
}

@book{xie2015,
  title = {Dynamic Documents with {{R}} and Knitr},
  author = {Xie, Yihui},
  date = {2015},
  series = {The {{R Series}}},
  publisher = {{Chapman and Hall/CRC}},
  location = {{Boca Raton}},
  isbn = {978-1-4987-1696-3},
  langid = {english},
  pagetotal = {266}
}

@book{xie2021,
  title = {R Markdown Cookbook},
  author = {Xie, Yihui and Dervieux, Christophe and Riederer, Emily},
  date = {2021},
  series = {The {{R Series}}},
  publisher = {{Chapman and Hall/CRC}},
  location = {{Boca Raton}},
  abstract = {This new book written by the developers of R Markdown is an essential reference that will help users learn and make full use of the software. Those new to R Markdown will appreciate the short, practical examples that address the most common issues users encounter. Frequent users will also benefit from the wide ranging tips and tricks that expose 'hidden' features, support customization and demonstrate the many new and varied applications of the software. After reading this book users will learn how to: Enhance your R Markdown content with diagrams, citations, and dynamically generated text Streamline your workflow with child documents, code chunk references, and caching Control the formatting and layout with Pandoc markdown syntax or by writing custom HTML and LaTeX templates Utilize chunk options and hooks to fine-tune how your code is processed Switch between different language engineers to seamlessly incorporate python, D3, and more into your analysis. --},
  isbn = {978-0-367-56383-7},
  langid = {english},
  pagetotal = {329}
}

@article{yalta2008,
  title = {The Accuracy of Statistical Distributions in {{Microsoft}}® {{Excel}} 2007},
  author = {Yalta, A. Talha},
  date = {2008-06},
  journaltitle = {Computational Statistics \& Data Analysis},
  shortjournal = {Computational Statistics \& Data Analysis},
  volume = {52},
  number = {10},
  pages = {4579--4586},
  issn = {01679473},
  doi = {10.1016/j.csda.2008.03.005},
  langid = {english}
}

@article{zacks1998,
  title = {Reading Bar Graphs: {{Effects}} of Extraneous Depth Cues and Graphical Context.},
  shorttitle = {Reading Bar Graphs},
  author = {Zacks, Jeff and Levy, Ellen and Tversky, Barbara and Schiano, Diane J.},
  date = {1998},
  journaltitle = {Journal of Experimental Psychology: Applied},
  shortjournal = {Journal of Experimental Psychology: Applied},
  volume = {4},
  number = {2},
  pages = {119--138},
  issn = {1076-898X},
  doi = {10.1037/1076-898X.4.2.119},
  langid = {english}
}

@inproceedings{zubiaga2015,
  title = {Knowing {{What You Dont Know}}: {{Choosing}} the {{Right Chart}} to {{Show Data Distributions}} to {{Non-Expert Users}}},
  author = {Zubiaga, Arkaitz and MacNamee, Brian},
  date = {2015},
  publisher = {{ACM}},
  eventtitle = {Web {{Science}} 2015 {{Conference}} ({{Oxford}}, {{United Kingdom}}; 28 {{June-1 July}} 2015)},
  langid = {english}
}