From 99792bec75275f6929a7099d2bf5285b49b4b542 Mon Sep 17 00:00:00 2001
From: David Linke <dr.david.linke@gmail.com>
Date: Sun, 5 Jan 2025 17:08:30 +0100
Subject: [PATCH 1/2] Upgrade pyproject for poetry 2.0

---
 poetry.lock    | 402 ++++++++++++++++++++++++++++++++++++++-----------
 pyproject.toml |  58 ++++---
 2 files changed, 351 insertions(+), 109 deletions(-)

diff --git a/poetry.lock b/poetry.lock
index 8d8c7cc..c95053c 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -1,4 +1,4 @@
-# This file is automatically @generated by Poetry 1.8.5 and should not be changed by hand.
+# This file is automatically @generated by Poetry 2.0.0 and should not be changed by hand.
 
 [[package]]
 name = "annotated-types"
@@ -6,6 +6,7 @@ version = "0.7.0"
 description = "Reusable constraint types to use with typing.Annotated"
 optional = false
 python-versions = ">=3.8"
+groups = ["main"]
 files = [
     {file = "annotated_types-0.7.0-py3-none-any.whl", hash = "sha256:1f02e8b43a8fbbc3f3e0d4f0f4bfc8131bcb4eebe8849b8e5c773f3a1c582a53"},
     {file = "annotated_types-0.7.0.tar.gz", hash = "sha256:aff07c09a53a08bc8cfccb9c85b05f1aa9a2a6f23728d790723543408344ce89"},
@@ -15,8 +16,10 @@ files = [
 name = "antlr4-python3-runtime"
 version = "4.9.3"
 description = "ANTLR 4.9.3 runtime for Python 3.7"
-optional = false
+optional = true
 python-versions = "*"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "antlr4-python3-runtime-4.9.3.tar.gz", hash = "sha256:f224469b4168294902bb1efa80a8bf7855f24c99aef99cbefc1bcd3cce77881b"},
 ]
@@ -25,8 +28,10 @@ files = [
 name = "arrow"
 version = "1.3.0"
 description = "Better dates & times for Python"
-optional = false
+optional = true
 python-versions = ">=3.8"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "arrow-1.3.0-py3-none-any.whl", hash = "sha256:c728b120ebc00eb84e01882a6f5e7927a53960aa990ce7dd2b10f39005a67f80"},
     {file = "arrow-1.3.0.tar.gz", hash = "sha256:d4540617648cb5f895730f1ad8c82a65f2dad0166f57b75f3ca54759c4d67a85"},
@@ -46,6 +51,7 @@ version = "24.2.0"
 description = "Classes Without Boilerplate"
 optional = false
 python-versions = ">=3.7"
+groups = ["main"]
 files = [
     {file = "attrs-24.2.0-py3-none-any.whl", hash = "sha256:81921eb96de3191c8258c199618104dd27ac608d9366f5e35d011eae1867ede2"},
     {file = "attrs-24.2.0.tar.gz", hash = "sha256:5cfb1b9148b5b086569baec03f20d7b6bf3bcacc9a42bebf87ffaaca362f6346"},
@@ -63,8 +69,10 @@ tests-mypy = ["mypy (>=1.11.1)", "pytest-mypy-plugins"]
 name = "beautifulsoup4"
 version = "4.12.3"
 description = "Screen-scraping library"
-optional = false
+optional = true
 python-versions = ">=3.6.0"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "beautifulsoup4-4.12.3-py3-none-any.whl", hash = "sha256:b80878c9f40111313e55da8ba20bdba06d8fa3969fc68304167741bbf9e082ed"},
     {file = "beautifulsoup4-4.12.3.tar.gz", hash = "sha256:74e3d1928edc070d21748185c46e3fb33490f22f52a3addee9aee0f4f7781051"},
@@ -84,8 +92,10 @@ lxml = ["lxml"]
 name = "bioregistry"
 version = "0.11.19"
 description = "Integrated registry of biological databases and nomenclatures"
-optional = false
+optional = true
 python-versions = ">=3.9"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "bioregistry-0.11.19-py3-none-any.whl", hash = "sha256:c0d591c823c13f84d30cd52e25041b3352fc2b4943544c99002bbf13c4ceef95"},
     {file = "bioregistry-0.11.19.tar.gz", hash = "sha256:1dd70d1be18c50465e6417cb567c3b7a0f25e93b6966f69f3dc9a3fcf63c46d3"},
@@ -114,8 +124,10 @@ web = ["a2wsgi", "bootstrap-flask (<=2.0.0)", "curies[fastapi]", "fastapi", "fla
 name = "cachetools"
 version = "5.5.0"
 description = "Extensible memoizing collections and decorators"
-optional = false
+optional = true
 python-versions = ">=3.7"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "cachetools-5.5.0-py3-none-any.whl", hash = "sha256:02134e8439cdc2ffb62023ce1debca2944c3f289d66bb17ead3ab3dede74b292"},
     {file = "cachetools-5.5.0.tar.gz", hash = "sha256:2cc24fb4cbe39633fb7badd9db9ca6295d766d9c2995f245725a46715d050f2a"},
@@ -127,6 +139,7 @@ version = "2024.8.30"
 description = "Python package for providing Mozilla's CA Bundle."
 optional = false
 python-versions = ">=3.6"
+groups = ["main"]
 files = [
     {file = "certifi-2024.8.30-py3-none-any.whl", hash = "sha256:922820b53db7a7257ffbda3f597266d435245903d80737e34f8a45ff3e3230d8"},
     {file = "certifi-2024.8.30.tar.gz", hash = "sha256:bec941d2aa8195e248a60b31ff9f0558284cf01a52591ceda73ea9afffd69fd9"},
@@ -136,8 +149,10 @@ files = [
 name = "cfgraph"
 version = "0.2.1"
 description = "rdflib collections flattening graph"
-optional = false
+optional = true
 python-versions = "*"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "CFGraph-0.2.1.tar.gz", hash = "sha256:b57fe7044a10b8ff65aa3a8a8ddc7d4cd77bf511b42e57289cd52cbc29f8fe74"},
 ]
@@ -149,8 +164,10 @@ rdflib = ">=0.4.2"
 name = "chardet"
 version = "5.2.0"
 description = "Universal encoding detector for Python 3"
-optional = false
+optional = true
 python-versions = ">=3.7"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "chardet-5.2.0-py3-none-any.whl", hash = "sha256:e1cf59446890a00105fe7b7912492ea04b6e6f06d4b742b2c788469e34c82970"},
     {file = "chardet-5.2.0.tar.gz", hash = "sha256:1b3b6ff479a8c414bc3fa2c0852995695c4a026dcd6d0633b2dd092ca39c1cf7"},
@@ -162,6 +179,7 @@ version = "3.4.0"
 description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet."
 optional = false
 python-versions = ">=3.7.0"
+groups = ["main"]
 files = [
     {file = "charset_normalizer-3.4.0-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:4f9fc98dad6c2eaa32fc3af1417d95b5e3d08aff968df0cd320066def971f9a6"},
     {file = "charset_normalizer-3.4.0-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:0de7b687289d3c1b3e8660d0741874abe7888100efe14bd0f9fd7141bcbda92b"},
@@ -276,6 +294,7 @@ version = "8.1.7"
 description = "Composable command line interface toolkit"
 optional = false
 python-versions = ">=3.7"
+groups = ["main"]
 files = [
     {file = "click-8.1.7-py3-none-any.whl", hash = "sha256:ae74fb96c20a0277a1d615f1e4d73c8414f5a98db8b799a7931d1582f3390c28"},
     {file = "click-8.1.7.tar.gz", hash = "sha256:ca9853ad459e787e2192211578cc907e7594e294c7ccc834310722b41b9ca6de"},
@@ -290,6 +309,8 @@ version = "0.4.6"
 description = "Cross-platform colored terminal text."
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7"
+groups = ["main"]
+markers = "platform_system == \"Windows\" or sys_platform == \"win32\""
 files = [
     {file = "colorama-0.4.6-py2.py3-none-any.whl", hash = "sha256:4f1d9991f5acc0ca119f9d443620b77f9d6b33703e51011c16baf57afb285fc6"},
     {file = "colorama-0.4.6.tar.gz", hash = "sha256:08695f5cb7ed6e0531a20572697297273c47b8cae5a63ffc6d6ed5c201be6e44"},
@@ -301,6 +322,7 @@ version = "0.8.0"
 description = "Idiomatic conversion between URIs and compact URIs (CURIEs)"
 optional = false
 python-versions = ">=3.9"
+groups = ["main"]
 files = [
     {file = "curies-0.8.0-py3-none-any.whl", hash = "sha256:da2f47270a778cc3ac5e573c1fcaab5c7f7ea91d9b542ada50d5fafb240997cd"},
     {file = "curies-0.8.0.tar.gz", hash = "sha256:be743facd2cc33cf3f827e318f846dcc192e7f7787a2bf215cb4c317e94ac02d"},
@@ -323,8 +345,10 @@ tests = ["coverage", "pytest"]
 name = "daff"
 version = "1.3.46"
 description = "Diff and patch tables"
-optional = false
+optional = true
 python-versions = "*"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "daff-1.3.46.tar.gz", hash = "sha256:22d0da9fd6a3275b54c926a9c97b180f9258aad65113ea18f3fec52cbadcd818"},
 ]
@@ -335,6 +359,7 @@ version = "1.2.14"
 description = "Python @deprecated decorator to deprecate old python classes, functions or methods."
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
+groups = ["main"]
 files = [
     {file = "Deprecated-1.2.14-py2.py3-none-any.whl", hash = "sha256:6fac8b097794a90302bdbb17b9b815e732d3c4720583ff1b198499d78470466c"},
     {file = "Deprecated-1.2.14.tar.gz", hash = "sha256:e5323eb936458dccc2582dc6f9c322c852a775a27065ff2b0c4970b9d53d01b3"},
@@ -350,8 +375,10 @@ dev = ["PyTest", "PyTest-Cov", "bump2version (<1)", "sphinx (<2)", "tox"]
 name = "editorconfig"
 version = "0.12.4"
 description = "EditorConfig File Locator and Interpreter for Python"
-optional = false
+optional = true
 python-versions = "*"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "EditorConfig-0.12.4.tar.gz", hash = "sha256:24857fa1793917dd9ccf0c7810a07e05404ce9b823521c7dce22a4fb5d125f80"},
 ]
@@ -360,8 +387,10 @@ files = [
 name = "et-xmlfile"
 version = "1.1.0"
 description = "An implementation of lxml.xmlfile for the standard library"
-optional = false
+optional = true
 python-versions = ">=3.6"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "et_xmlfile-1.1.0-py3-none-any.whl", hash = "sha256:a2ba85d1d6a74ef63837eed693bcb89c3f752169b0e3e7ae5b16ca5e1b3deada"},
     {file = "et_xmlfile-1.1.0.tar.gz", hash = "sha256:8eb9e2bc2f8c97e37a2dc85a09ecdcdec9d8a396530a6d5a33b30b9a92da0c5c"},
@@ -373,6 +402,8 @@ version = "1.2.2"
 description = "Backport of PEP 654 (exception groups)"
 optional = false
 python-versions = ">=3.7"
+groups = ["main"]
+markers = "python_version < \"3.11\""
 files = [
     {file = "exceptiongroup-1.2.2-py3-none-any.whl", hash = "sha256:3111b9d131c238bec2f8f516e123e14ba243563fb135d3fe885990585aa7795b"},
     {file = "exceptiongroup-1.2.2.tar.gz", hash = "sha256:47c2edf7c6738fafb49fd34290706d1a1a2f4d1c6df275526b62cbb4aa5393cc"},
@@ -385,8 +416,10 @@ test = ["pytest (>=6)"]
 name = "fqdn"
 version = "1.5.1"
 description = "Validates fully-qualified domain names against RFC 1123, so that they are acceptable to modern bowsers"
-optional = false
+optional = true
 python-versions = ">=2.7, !=3.0, !=3.1, !=3.2, !=3.3, !=3.4, <4"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "fqdn-1.5.1-py3-none-any.whl", hash = "sha256:3a179af3761e4df6eb2e026ff9e1a3033d3587bf980a0b1b2e1e5d08d7358014"},
     {file = "fqdn-1.5.1.tar.gz", hash = "sha256:105ed3677e767fb5ca086a0c1f4bb66ebc3c100be518f0e0d755d9eae164d89f"},
@@ -396,8 +429,10 @@ files = [
 name = "ghp-import"
 version = "2.1.0"
 description = "Copy your docs directly to the gh-pages branch."
-optional = false
+optional = true
 python-versions = "*"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "ghp-import-2.1.0.tar.gz", hash = "sha256:9c535c4c61193c2df8871222567d7fd7e5014d835f97dc7b7439069e2413d343"},
     {file = "ghp_import-2.1.0-py3-none-any.whl", hash = "sha256:8337dd7b50877f163d4c0289bc1f1c7f127550241988d568c1db512c4324a619"},
@@ -413,8 +448,10 @@ dev = ["flake8", "markdown", "twine", "wheel"]
 name = "google"
 version = "3.0.0"
 description = "Python bindings to the Google search engine."
-optional = false
+optional = true
 python-versions = "*"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "google-3.0.0-py2.py3-none-any.whl", hash = "sha256:889cf695f84e4ae2c55fbc0cfdaf4c1e729417fa52ab1db0485202ba173e4935"},
     {file = "google-3.0.0.tar.gz", hash = "sha256:143530122ee5130509ad5e989f0512f7cb218b2d4eddbafbad40fd10e8d8ccbe"},
@@ -427,8 +464,10 @@ beautifulsoup4 = "*"
 name = "google-api-core"
 version = "2.21.0"
 description = "Google API client core library"
-optional = false
+optional = true
 python-versions = ">=3.7"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "google_api_core-2.21.0-py3-none-any.whl", hash = "sha256:6869eacb2a37720380ba5898312af79a4d30b8bca1548fb4093e0697dc4bdf5d"},
     {file = "google_api_core-2.21.0.tar.gz", hash = "sha256:4a152fd11a9f774ea606388d423b68aa7e6d6a0ffe4c8266f74979613ec09f81"},
@@ -451,8 +490,10 @@ grpcio-gcp = ["grpcio-gcp (>=0.2.2,<1.0.dev0)"]
 name = "google-api-python-client"
 version = "2.149.0"
 description = "Google API Client Library for Python"
-optional = false
+optional = true
 python-versions = ">=3.7"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "google_api_python_client-2.149.0-py2.py3-none-any.whl", hash = "sha256:1a5232e9cfed8c201799d9327e4d44dc7ea7daa3c6e1627fca41aa201539c0da"},
     {file = "google_api_python_client-2.149.0.tar.gz", hash = "sha256:b9d68c6b14ec72580d66001bd33c5816b78e2134b93ccc5cf8f624516b561750"},
@@ -469,8 +510,10 @@ uritemplate = ">=3.0.1,<5"
 name = "google-auth"
 version = "2.35.0"
 description = "Google Authentication Library"
-optional = false
+optional = true
 python-versions = ">=3.7"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "google_auth-2.35.0-py2.py3-none-any.whl", hash = "sha256:25df55f327ef021de8be50bad0dfd4a916ad0de96da86cd05661c9297723ad3f"},
     {file = "google_auth-2.35.0.tar.gz", hash = "sha256:f4c64ed4e01e8e8b646ef34c018f8bf3338df0c8e37d8b3bba40e7f574a3278a"},
@@ -492,8 +535,10 @@ requests = ["requests (>=2.20.0,<3.0.0.dev0)"]
 name = "google-auth-httplib2"
 version = "0.2.0"
 description = "Google Authentication Library: httplib2 transport"
-optional = false
+optional = true
 python-versions = "*"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "google-auth-httplib2-0.2.0.tar.gz", hash = "sha256:38aa7badf48f974f1eb9861794e9c0cb2a0511a4ec0679b1f886d108f5640e05"},
     {file = "google_auth_httplib2-0.2.0-py2.py3-none-any.whl", hash = "sha256:b65a0a2123300dd71281a7bf6e64d65a0759287df52729bdd1ae2e47dc311a3d"},
@@ -507,8 +552,10 @@ httplib2 = ">=0.19.0"
 name = "google-auth-oauthlib"
 version = "1.2.1"
 description = "Google Authentication Library"
-optional = false
+optional = true
 python-versions = ">=3.6"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "google_auth_oauthlib-1.2.1-py2.py3-none-any.whl", hash = "sha256:2d58a27262d55aa1b87678c3ba7142a080098cbc2024f903c62355deb235d91f"},
     {file = "google_auth_oauthlib-1.2.1.tar.gz", hash = "sha256:afd0cad092a2eaa53cd8e8298557d6de1034c6cb4a740500b5357b648af97263"},
@@ -525,8 +572,10 @@ tool = ["click (>=6.0.0)"]
 name = "googleapis-common-protos"
 version = "1.65.0"
 description = "Common protobufs used in Google APIs"
-optional = false
+optional = true
 python-versions = ">=3.7"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "googleapis_common_protos-1.65.0-py2.py3-none-any.whl", hash = "sha256:2972e6c496f435b92590fd54045060867f3fe9be2c82ab148fc8885035479a63"},
     {file = "googleapis_common_protos-1.65.0.tar.gz", hash = "sha256:334a29d07cddc3aa01dee4988f9afd9b2916ee2ff49d6b757155dc0d197852c0"},
@@ -542,8 +591,10 @@ grpc = ["grpcio (>=1.44.0,<2.0.0.dev0)"]
 name = "graphviz"
 version = "0.20.3"
 description = "Simple Python interface for Graphviz"
-optional = false
+optional = true
 python-versions = ">=3.8"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "graphviz-0.20.3-py3-none-any.whl", hash = "sha256:81f848f2904515d8cd359cc611faba817598d2feaac4027b266aa3eda7b3dde5"},
     {file = "graphviz-0.20.3.zip", hash = "sha256:09d6bc81e6a9fa392e7ba52135a9d49f1ed62526f96499325930e87ca1b5925d"},
@@ -558,8 +609,10 @@ test = ["coverage", "pytest (>=7,<8.1)", "pytest-cov", "pytest-mock (>=3)"]
 name = "greenlet"
 version = "3.1.1"
 description = "Lightweight in-process concurrent programming"
-optional = false
+optional = true
 python-versions = ">=3.7"
+groups = ["main"]
+markers = "(extra == \"docs\" or extra == \"dev\") and (platform_machine == \"aarch64\" or platform_machine == \"ppc64le\" or platform_machine == \"x86_64\" or platform_machine == \"amd64\" or platform_machine == \"AMD64\" or platform_machine == \"win32\" or platform_machine == \"WIN32\") and python_version < \"3.13\""
 files = [
     {file = "greenlet-3.1.1-cp310-cp310-macosx_11_0_universal2.whl", hash = "sha256:0bbae94a29c9e5c7e4a2b7f0aae5c17e8e90acbfd3bf6270eeba60c39fce3563"},
     {file = "greenlet-3.1.1-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:0fde093fb93f35ca72a556cf72c92ea3ebfda3d79fc35bb19fbe685853869a83"},
@@ -644,8 +697,10 @@ test = ["objgraph", "psutil"]
 name = "gspread"
 version = "6.1.4"
 description = "Google Spreadsheets Python API"
-optional = false
+optional = true
 python-versions = ">=3.8"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "gspread-6.1.4-py3-none-any.whl", hash = "sha256:c34781c426031a243ad154952b16f21ac56a5af90687885fbee3d1fba5280dcd"},
     {file = "gspread-6.1.4.tar.gz", hash = "sha256:b8eec27de7cadb338bb1b9f14a9be168372dee8965c0da32121816b5050ac1de"},
@@ -659,8 +714,10 @@ google-auth-oauthlib = ">=0.4.1"
 name = "gspread-formatting"
 version = "1.2.0"
 description = "Complete Google Sheets formatting support for gspread worksheets"
-optional = false
+optional = true
 python-versions = "*"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "gspread-formatting-1.2.0.tar.gz", hash = "sha256:ba88eab6940e8f37580fc3073e89848ab7a6eaab4ed91f43b731579280c14086"},
     {file = "gspread_formatting-1.2.0-py2.py3-none-any.whl", hash = "sha256:9400a2369021ae6f6b31ed12eeddea35e5cfe1fd6c795487ed228eaf10fafad5"},
@@ -675,6 +732,7 @@ version = "0.9.1"
 description = "Honey Badger reader - a generic file/url/string open and read tool"
 optional = false
 python-versions = ">=3.7"
+groups = ["main"]
 files = [
     {file = "hbreader-0.9.1-py3-none-any.whl", hash = "sha256:9a6e76c9d1afc1b977374a5dc430a1ebb0ea0488205546d4678d6e31cc5f6801"},
     {file = "hbreader-0.9.1.tar.gz", hash = "sha256:d2c132f8ba6276d794c66224c3297cec25c8079d0a4cf019c061611e0a3b94fa"},
@@ -686,6 +744,7 @@ version = "1.2"
 description = "HTML parser based on the WHATWG HTML specification"
 optional = false
 python-versions = ">=3.8"
+groups = ["main"]
 files = [
     {file = "html5lib_modern-1.2-py2.py3-none-any.whl", hash = "sha256:3458b6e31525ede4fcaac0ff42d9eeb5efaf755473768103cb56e0275caa8d99"},
     {file = "html5lib_modern-1.2.tar.gz", hash = "sha256:1fadbfc27ea955431270e4e79a4a4c290ba11c3a3098a95cc22dc73e312a1768"},
@@ -701,8 +760,10 @@ lxml = ["lxml (>=3.4.0)"]
 name = "httplib2"
 version = "0.22.0"
 description = "A comprehensive HTTP client library."
-optional = false
+optional = true
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "httplib2-0.22.0-py3-none-any.whl", hash = "sha256:14ae0a53c1ba8f3d37e9e27cf37eabb0fb9980f435ba405d546948b009dd64dc"},
     {file = "httplib2-0.22.0.tar.gz", hash = "sha256:d7a10bc5ef5ab08322488bde8c726eeee5c8618723fdb399597ec58f3d82df81"},
@@ -717,6 +778,7 @@ version = "3.10"
 description = "Internationalized Domain Names in Applications (IDNA)"
 optional = false
 python-versions = ">=3.6"
+groups = ["main"]
 files = [
     {file = "idna-3.10-py3-none-any.whl", hash = "sha256:946d195a0d259cbba61165e88e65941f16e9b36ea6ddb97f00452bae8b1287d3"},
     {file = "idna-3.10.tar.gz", hash = "sha256:12f65c9b470abda6dc35cf8e63cc574b1c52b11df2c86030af0ac09b01b13ea9"},
@@ -729,8 +791,10 @@ all = ["flake8 (>=7.1.1)", "mypy (>=1.11.2)", "pytest (>=8.3.2)", "ruff (>=0.6.2
 name = "importlib-metadata"
 version = "8.5.0"
 description = "Read metadata from Python packages"
-optional = false
+optional = true
 python-versions = ">=3.8"
+groups = ["main"]
+markers = "extra == \"docs\" and python_version < \"3.10\" or extra == \"dev\" and python_version < \"3.10\""
 files = [
     {file = "importlib_metadata-8.5.0-py3-none-any.whl", hash = "sha256:45e54197d28b7a7f1559e60b95e7c567032b602131fbd588f1497f47880aa68b"},
     {file = "importlib_metadata-8.5.0.tar.gz", hash = "sha256:71522656f0abace1d072b9e5481a48f07c138e00f079c38c8f883823f9c26bd7"},
@@ -754,6 +818,7 @@ version = "2.0.0"
 description = "brain-dead simple config-ini parsing"
 optional = false
 python-versions = ">=3.7"
+groups = ["main"]
 files = [
     {file = "iniconfig-2.0.0-py3-none-any.whl", hash = "sha256:b6a85871a79d2e3b22d2d1b94ac2824226a63c6b741c88f7ae975f18b6778374"},
     {file = "iniconfig-2.0.0.tar.gz", hash = "sha256:2d91e135bf72d31a410b17c16da610a82cb55f6b0477d1a902134b24a455b8b3"},
@@ -765,6 +830,8 @@ version = "0.7.2"
 description = "An ISO 8601 date/time/duration parser and formatter"
 optional = false
 python-versions = ">=3.7"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\" or python_version < \"3.11\""
 files = [
     {file = "isodate-0.7.2-py3-none-any.whl", hash = "sha256:28009937d8031054830160fce6d409ed342816b543597cece116d966c6d99e15"},
     {file = "isodate-0.7.2.tar.gz", hash = "sha256:4cd1aa0f43ca76f4a6c6c0292a85f40b35ec2e43e315b59f06e6d32171a953e6"},
@@ -774,8 +841,10 @@ files = [
 name = "isoduration"
 version = "20.11.0"
 description = "Operations with ISO 8601 durations"
-optional = false
+optional = true
 python-versions = ">=3.7"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "isoduration-20.11.0-py3-none-any.whl", hash = "sha256:b2904c2a4228c3d44f409c8ae8e2370eb21a26f7ac2ec5446df141dde3452042"},
     {file = "isoduration-20.11.0.tar.gz", hash = "sha256:ac2f9015137935279eac671f94f89eb00584f940f5dc49462a0c4ee692ba1bd9"},
@@ -788,8 +857,10 @@ arrow = ">=0.15.0"
 name = "jinja2"
 version = "3.1.5"
 description = "A very fast and expressive template engine."
-optional = false
+optional = true
 python-versions = ">=3.7"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "jinja2-3.1.5-py3-none-any.whl", hash = "sha256:aba0f4dc9ed8013c424088f68a5c226f7d6097ed89b246d7749c2ec4175c6adb"},
     {file = "jinja2-3.1.5.tar.gz", hash = "sha256:8fefff8dc3034e27bb80d67c671eb8a9bc424c0ef4c0826edbff304cceff43bb"},
@@ -805,8 +876,10 @@ i18n = ["Babel (>=2.7)"]
 name = "jsbeautifier"
 version = "1.15.1"
 description = "JavaScript unobfuscator and beautifier."
-optional = false
+optional = true
 python-versions = "*"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "jsbeautifier-1.15.1.tar.gz", hash = "sha256:ebd733b560704c602d744eafc839db60a1ee9326e30a2a80c4adb8718adc1b24"},
 ]
@@ -821,6 +894,7 @@ version = "0.1.9"
 description = "Python library for denormalizing nested dicts or json objects to tables and back"
 optional = false
 python-versions = ">=3.7.0"
+groups = ["main"]
 files = [
     {file = "json_flattener-0.1.9-py3-none-any.whl", hash = "sha256:6b027746f08bf37a75270f30c6690c7149d5f704d8af1740c346a3a1236bc941"},
     {file = "json_flattener-0.1.9.tar.gz", hash = "sha256:84cf8523045ffb124301a602602201665fcb003a171ece87e6f46ed02f7f0c15"},
@@ -834,8 +908,10 @@ pyyaml = "*"
 name = "jsonasobj"
 version = "1.3.1"
 description = "JSON as python objects"
-optional = false
+optional = true
 python-versions = "*"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "jsonasobj-1.3.1-py3-none-any.whl", hash = "sha256:b9e329dc1ceaae7cf5d5b214684a0b100e0dad0be6d5bbabac281ec35ddeca65"},
     {file = "jsonasobj-1.3.1.tar.gz", hash = "sha256:d52e0544a54a08f6ea3f77fa3387271e3648655e0eace2f21e825c26370e44a2"},
@@ -847,6 +923,7 @@ version = "1.0.4"
 description = "JSON as python objects - version 2"
 optional = false
 python-versions = ">=3.6"
+groups = ["main"]
 files = [
     {file = "jsonasobj2-1.0.4-py3-none-any.whl", hash = "sha256:12e86f86324d54fcf60632db94ea74488d5314e3da554c994fe1e2c6f29acb79"},
     {file = "jsonasobj2-1.0.4.tar.gz", hash = "sha256:f50b1668ef478004aa487b2d2d094c304e5cb6b79337809f4a1f2975cc7fbb4e"},
@@ -859,8 +936,10 @@ hbreader = "*"
 name = "jsonpatch"
 version = "1.33"
 description = "Apply JSON-Patches (RFC 6902)"
-optional = false
+optional = true
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*, !=3.6.*"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "jsonpatch-1.33-py2.py3-none-any.whl", hash = "sha256:0ae28c0cd062bbd8b8ecc26d7d164fbbea9652a1a3693f3b956c1eae5145dade"},
     {file = "jsonpatch-1.33.tar.gz", hash = "sha256:9fcd4009c41e6d12348b4a0ff2563ba56a2923a7dfee731d004e212e1ee5030c"},
@@ -873,8 +952,10 @@ jsonpointer = ">=1.9"
 name = "jsonpath-ng"
 version = "1.7.0"
 description = "A final implementation of JSONPath for Python that aims to be standard compliant, including arithmetic and binary comparison operators and providing clear AST for metaprogramming."
-optional = false
+optional = true
 python-versions = "*"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "jsonpath-ng-1.7.0.tar.gz", hash = "sha256:f6f5f7fd4e5ff79c785f1573b394043b39849fb2bb47bcead935d12b00beab3c"},
 ]
@@ -886,8 +967,10 @@ ply = "*"
 name = "jsonpointer"
 version = "3.0.0"
 description = "Identify specific nodes in a JSON document (RFC 6901)"
-optional = false
+optional = true
 python-versions = ">=3.7"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "jsonpointer-3.0.0-py2.py3-none-any.whl", hash = "sha256:13e088adc14fca8b6aa8177c044e12701e6ad4b28ff10e65f2267a90109c9942"},
     {file = "jsonpointer-3.0.0.tar.gz", hash = "sha256:2b2d729f2091522d61c3b31f82e11870f60b68f43fbc705cb76bf4b832af59ef"},
@@ -899,6 +982,7 @@ version = "4.23.0"
 description = "An implementation of JSON Schema validation for Python"
 optional = false
 python-versions = ">=3.8"
+groups = ["main"]
 files = [
     {file = "jsonschema-4.23.0-py3-none-any.whl", hash = "sha256:fbadb6f8b144a8f8cf9f0b89ba94501d143e50411a1278633f56a7acf7fd5566"},
     {file = "jsonschema-4.23.0.tar.gz", hash = "sha256:d71497fef26351a33265337fa77ffeb82423f3ea21283cd9467bb03999266bc4"},
@@ -928,6 +1012,7 @@ version = "2024.10.1"
 description = "The JSON Schema meta-schemas and vocabularies, exposed as a Registry"
 optional = false
 python-versions = ">=3.9"
+groups = ["main"]
 files = [
     {file = "jsonschema_specifications-2024.10.1-py3-none-any.whl", hash = "sha256:a09a0680616357d9a0ecf05c12ad234479f549239d0f5b55f3deea67475da9bf"},
     {file = "jsonschema_specifications-2024.10.1.tar.gz", hash = "sha256:0f38b83639958ce1152d02a7f062902c41c8fd20d558b0c34344292d417ae272"},
@@ -940,8 +1025,10 @@ referencing = ">=0.31.0"
 name = "linkml"
 version = "1.8.5"
 description = "Linked Open Data Modeling Language"
-optional = false
+optional = true
 python-versions = "<4.0.0,>=3.8.1"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "linkml-1.8.5-py3-none-any.whl", hash = "sha256:5a45577a4bb380f3a128f45764545cb2da92dd3310a110de7dc5355796d5ac43"},
     {file = "linkml-1.8.5.tar.gz", hash = "sha256:8f31834560ade4b7f1aebc973d22b31951d7061643d32bdcba258a650db9b140"},
@@ -983,8 +1070,10 @@ tests = ["black (>=24.0.0)", "numpydantic (>=1.6.1)", "pyshacl (>=0.25.0,<0.26.0
 name = "linkml-dataops"
 version = "0.1.0"
 description = "LinkML Data Operations API"
-optional = false
+optional = true
 python-versions = ">=3.7"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "linkml_dataops-0.1.0-py3-none-any.whl", hash = "sha256:193cf7f659e5f07946d2c2761896910d5f7151d91282543b1363801f68307f4c"},
     {file = "linkml_dataops-0.1.0.tar.gz", hash = "sha256:4550eab65e78b70dc3b9c651724a94ac2b1d1edb2fbe576465f1d6951a54ed04"},
@@ -1003,6 +1092,7 @@ version = "1.8.3"
 description = "Runtime environment for LinkML, the Linked open data modeling language"
 optional = false
 python-versions = "<4.0,>=3.8"
+groups = ["main"]
 files = [
     {file = "linkml_runtime-1.8.3-py3-none-any.whl", hash = "sha256:0750920f1348fffa903d99e7b5834ce425a2a538285aff9068dbd96d05caabd1"},
     {file = "linkml_runtime-1.8.3.tar.gz", hash = "sha256:5b7f682eef54aaf0a59c50eeacdb11463b43b124a044caf496cde59936ac05c8"},
@@ -1027,8 +1117,10 @@ requests = "*"
 name = "markdown"
 version = "3.7"
 description = "Python implementation of John Gruber's Markdown."
-optional = false
+optional = true
 python-versions = ">=3.8"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "Markdown-3.7-py3-none-any.whl", hash = "sha256:7eb6df5690b81a1d7942992c97fad2938e956e79df20cbc6186e9c3a77b1c803"},
     {file = "markdown-3.7.tar.gz", hash = "sha256:2ae2471477cfd02dbbf038d5d9bc226d40def84b4fe2986e49b59b6b472bbed2"},
@@ -1045,8 +1137,10 @@ testing = ["coverage", "pyyaml"]
 name = "markupsafe"
 version = "3.0.2"
 description = "Safely add untrusted strings to HTML/XML markup."
-optional = false
+optional = true
 python-versions = ">=3.9"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "MarkupSafe-3.0.2-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:7e94c425039cde14257288fd61dcfb01963e658efbc0ff54f5306b06054700f8"},
     {file = "MarkupSafe-3.0.2-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:9e2d922824181480953426608b81967de705c3cef4d1af983af849d7bd619158"},
@@ -1115,8 +1209,10 @@ files = [
 name = "mergedeep"
 version = "1.3.4"
 description = "A deep merge function for 🐍."
-optional = false
+optional = true
 python-versions = ">=3.6"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "mergedeep-1.3.4-py3-none-any.whl", hash = "sha256:70775750742b25c0d8f36c55aed03d24c3384d17c951b3175d898bd778ef0307"},
     {file = "mergedeep-1.3.4.tar.gz", hash = "sha256:0096d52e9dad9939c3d975a774666af186eda617e6ca84df4c94dec30004f2a8"},
@@ -1126,8 +1222,10 @@ files = [
 name = "mkdocs"
 version = "1.6.1"
 description = "Project documentation with Markdown."
-optional = false
+optional = true
 python-versions = ">=3.8"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "mkdocs-1.6.1-py3-none-any.whl", hash = "sha256:db91759624d1647f3f34aa0c3f327dd2601beae39a366d6e064c03468d35c20e"},
     {file = "mkdocs-1.6.1.tar.gz", hash = "sha256:7b432f01d928c084353ab39c57282f29f92136665bdd6abf7c1ec8d822ef86f2"},
@@ -1157,8 +1255,10 @@ min-versions = ["babel (==2.9.0)", "click (==7.0)", "colorama (==0.4)", "ghp-imp
 name = "mkdocs-get-deps"
 version = "0.2.0"
 description = "MkDocs extension that lists all dependencies according to a mkdocs.yml file"
-optional = false
+optional = true
 python-versions = ">=3.8"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "mkdocs_get_deps-0.2.0-py3-none-any.whl", hash = "sha256:2bf11d0b133e77a0dd036abeeb06dec8775e46efa526dc70667d8863eefc6134"},
     {file = "mkdocs_get_deps-0.2.0.tar.gz", hash = "sha256:162b3d129c7fad9b19abfdcb9c1458a651628e4b1dea628ac68790fb3061c60c"},
@@ -1174,8 +1274,10 @@ pyyaml = ">=5.1"
 name = "mkdocs-material"
 version = "8.5.11"
 description = "Documentation that simply works"
-optional = false
+optional = true
 python-versions = ">=3.7"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "mkdocs_material-8.5.11-py3-none-any.whl", hash = "sha256:c907b4b052240a5778074a30a78f31a1f8ff82d7012356dc26898b97559f082e"},
     {file = "mkdocs_material-8.5.11.tar.gz", hash = "sha256:b0ea0513fd8cab323e8a825d6692ea07fa83e917bb5db042e523afecc7064ab7"},
@@ -1194,8 +1296,10 @@ requests = ">=2.26"
 name = "mkdocs-material-extensions"
 version = "1.3.1"
 description = "Extension pack for Python Markdown and MkDocs Material."
-optional = false
+optional = true
 python-versions = ">=3.8"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "mkdocs_material_extensions-1.3.1-py3-none-any.whl", hash = "sha256:adff8b62700b25cb77b53358dad940f3ef973dd6db797907c49e3c2ef3ab4e31"},
     {file = "mkdocs_material_extensions-1.3.1.tar.gz", hash = "sha256:10c9511cea88f568257f960358a467d12b970e1f7b2c0e5fb2bb48cab1928443"},
@@ -1205,8 +1309,10 @@ files = [
 name = "mkdocs-mermaid2-plugin"
 version = "1.1.1"
 description = "A MkDocs plugin for including mermaid graphs in markdown sources"
-optional = false
+optional = true
 python-versions = ">=3.6"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "mkdocs-mermaid2-plugin-1.1.1.tar.gz", hash = "sha256:bea5f3cbe6cb76bad21b81e49a01e074427ed466666c5d404e62fe8698bc2d7c"},
     {file = "mkdocs_mermaid2_plugin-1.1.1-py3-none-any.whl", hash = "sha256:4e25876b59d1e151ca33a467207b346404b4a246f4f24af5e44c32408e175882"},
@@ -1227,8 +1333,10 @@ test = ["mkdocs-material"]
 name = "more-click"
 version = "0.1.2"
 description = "More click."
-optional = false
+optional = true
 python-versions = ">=3.7"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "more_click-0.1.2-py3-none-any.whl", hash = "sha256:f6387af37ef7e7423bd94b72a81a53c79c5086a3bfe5cc035da534ff0c2a0a9e"},
     {file = "more_click-0.1.2.tar.gz", hash = "sha256:085da66d5a9b823c5d912a888dca1fa0c8b3a14ed1b21ea9c8a1b814857a3981"},
@@ -1244,8 +1352,10 @@ tests = ["coverage", "pytest"]
 name = "oauthlib"
 version = "3.2.2"
 description = "A generic, spec-compliant, thorough implementation of the OAuth request-signing logic"
-optional = false
+optional = true
 python-versions = ">=3.6"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "oauthlib-3.2.2-py3-none-any.whl", hash = "sha256:8139f29aac13e25d502680e9e19963e83f16838d48a0d71c287fe40e7067fbca"},
     {file = "oauthlib-3.2.2.tar.gz", hash = "sha256:9859c40929662bec5d64f34d01c99e093149682a3f38915dc0655d5a633dd918"},
@@ -1260,8 +1370,10 @@ signedtoken = ["cryptography (>=3.0.0)", "pyjwt (>=2.0.0,<3)"]
 name = "ontodev-cogs"
 version = "0.3.3"
 description = "COGS Operates Google Sheets"
-optional = false
+optional = true
 python-versions = ">=3.6, <4"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "ontodev-cogs-0.3.3.tar.gz", hash = "sha256:04cf448eda59e0645c6626453f7617a6b2be3129c8586c4d4a515ad031f61a18"},
     {file = "ontodev_cogs-0.3.3-py3-none-any.whl", hash = "sha256:b3299b7884891d00e016f9cb0329a1a0dc8af4bfba45dce3815f654360b1f333"},
@@ -1281,8 +1393,10 @@ termcolor = "*"
 name = "openpyxl"
 version = "3.1.5"
 description = "A Python library to read/write Excel 2010 xlsx/xlsm files"
-optional = false
+optional = true
 python-versions = ">=3.8"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "openpyxl-3.1.5-py2.py3-none-any.whl", hash = "sha256:5282c12b107bffeef825f4617dc029afaf41d0ea60823bbb665ef3079dc79de2"},
     {file = "openpyxl-3.1.5.tar.gz", hash = "sha256:cf0e3cf56142039133628b5acffe8ef0c12bc902d2aadd3e0fe5878dc08d1050"},
@@ -1297,6 +1411,7 @@ version = "24.1"
 description = "Core utilities for Python packages"
 optional = false
 python-versions = ">=3.8"
+groups = ["main"]
 files = [
     {file = "packaging-24.1-py3-none-any.whl", hash = "sha256:5b8f2217dbdbd2f7f384c41c628544e6d52f2d0f53c6d0c3ea61aa5d1d7ff124"},
     {file = "packaging-24.1.tar.gz", hash = "sha256:026ed72c8ed3fcce5bf8950572258698927fd1dbda10a5e981cdf0ac37f4f002"},
@@ -1306,8 +1421,10 @@ files = [
 name = "parse"
 version = "1.20.2"
 description = "parse() is the opposite of format()"
-optional = false
+optional = true
 python-versions = "*"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "parse-1.20.2-py2.py3-none-any.whl", hash = "sha256:967095588cb802add9177d0c0b6133b5ba33b1ea9007ca800e526f42a85af558"},
     {file = "parse-1.20.2.tar.gz", hash = "sha256:b41d604d16503c79d81af5165155c0b20f6c8d6c559efa66b4b695c3e5a0a0ce"},
@@ -1317,8 +1434,10 @@ files = [
 name = "pathspec"
 version = "0.12.1"
 description = "Utility library for gitignore style pattern matching of file paths."
-optional = false
+optional = true
 python-versions = ">=3.8"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "pathspec-0.12.1-py3-none-any.whl", hash = "sha256:a0d503e138a4c123b27490a4f7beda6a01c6f288df0e4a8b79c7eb0dc7b4cc08"},
     {file = "pathspec-0.12.1.tar.gz", hash = "sha256:a482d51503a1ab33b1c67a6c3813a26953dbdc71c31dacaef9a838c4e29f5712"},
@@ -1328,8 +1447,10 @@ files = [
 name = "platformdirs"
 version = "4.3.6"
 description = "A small Python package for determining appropriate platform-specific dirs, e.g. a `user data dir`."
-optional = false
+optional = true
 python-versions = ">=3.8"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "platformdirs-4.3.6-py3-none-any.whl", hash = "sha256:73e575e1408ab8103900836b97580d5307456908a03e92031bab39e4554cc3fb"},
     {file = "platformdirs-4.3.6.tar.gz", hash = "sha256:357fb2acbc885b0419afd3ce3ed34564c13c9b95c89360cd9563f73aa5e2b907"},
@@ -1346,6 +1467,7 @@ version = "1.5.0"
 description = "plugin and hook calling mechanisms for python"
 optional = false
 python-versions = ">=3.8"
+groups = ["main"]
 files = [
     {file = "pluggy-1.5.0-py3-none-any.whl", hash = "sha256:44e1ad92c8ca002de6377e165f3e0f1be63266ab4d554740532335b9d75ea669"},
     {file = "pluggy-1.5.0.tar.gz", hash = "sha256:2cffa88e94fdc978c4c574f15f9e59b7f4201d439195c3715ca9e2486f1d0cf1"},
@@ -1359,8 +1481,10 @@ testing = ["pytest", "pytest-benchmark"]
 name = "ply"
 version = "3.11"
 description = "Python Lex & Yacc"
-optional = false
+optional = true
 python-versions = "*"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "ply-3.11-py2.py3-none-any.whl", hash = "sha256:096f9b8350b65ebd2fd1346b12452efe5b9607f7482813ffca50c22722a807ce"},
     {file = "ply-3.11.tar.gz", hash = "sha256:00c7c1aaa88358b9c765b6d3000c6eec0ba42abca5351b095321aef446081da3"},
@@ -1372,6 +1496,7 @@ version = "0.1.12"
 description = "A python API for working with ID prefixes"
 optional = false
 python-versions = ">=3.7,<4.0"
+groups = ["main"]
 files = [
     {file = "prefixcommons-0.1.12-py3-none-any.whl", hash = "sha256:16dbc0a1f775e003c724f19a694fcfa3174608f5c8b0e893d494cf8098ac7f8b"},
     {file = "prefixcommons-0.1.12.tar.gz", hash = "sha256:22c4e2d37b63487b3ab48f0495b70f14564cb346a15220f23919eb0c1851f69f"},
@@ -1389,6 +1514,7 @@ version = "0.2.6"
 description = "A python library for retrieving semantic prefix maps"
 optional = false
 python-versions = "<4.0,>=3.8"
+groups = ["main"]
 files = [
     {file = "prefixmaps-0.2.6-py3-none-any.whl", hash = "sha256:f6cef28a7320fc6337cf411be212948ce570333a0ce958940ef684c7fb192a62"},
     {file = "prefixmaps-0.2.6.tar.gz", hash = "sha256:7421e1244eea610217fa1ba96c9aebd64e8162a930dc0626207cd8bf62ecf4b9"},
@@ -1402,8 +1528,10 @@ pyyaml = ">=5.3.1"
 name = "proto-plus"
 version = "1.25.0"
 description = "Beautiful, Pythonic protocol buffers."
-optional = false
+optional = true
 python-versions = ">=3.7"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "proto_plus-1.25.0-py3-none-any.whl", hash = "sha256:c91fc4a65074ade8e458e95ef8bac34d4008daa7cce4a12d6707066fca648961"},
     {file = "proto_plus-1.25.0.tar.gz", hash = "sha256:fbb17f57f7bd05a68b7707e745e26528b0b3c34e378db91eef93912c54982d91"},
@@ -1419,8 +1547,10 @@ testing = ["google-api-core (>=1.31.5)"]
 name = "protobuf"
 version = "5.28.3"
 description = ""
-optional = false
+optional = true
 python-versions = ">=3.8"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "protobuf-5.28.3-cp310-abi3-win32.whl", hash = "sha256:0c4eec6f987338617072592b97943fdbe30d019c56126493111cf24344c1cc24"},
     {file = "protobuf-5.28.3-cp310-abi3-win_amd64.whl", hash = "sha256:91fba8f445723fcf400fdbe9ca796b19d3b1242cd873907979b9ed71e4afe868"},
@@ -1439,8 +1569,10 @@ files = [
 name = "pyasn1"
 version = "0.6.1"
 description = "Pure-Python implementation of ASN.1 types and DER/BER/CER codecs (X.208)"
-optional = false
+optional = true
 python-versions = ">=3.8"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "pyasn1-0.6.1-py3-none-any.whl", hash = "sha256:0d632f46f2ba09143da3a8afe9e33fb6f92fa2320ab7e886e2d0f7672af84629"},
     {file = "pyasn1-0.6.1.tar.gz", hash = "sha256:6f580d2bdd84365380830acf45550f2511469f673cb4a5ae3857a3170128b034"},
@@ -1450,8 +1582,10 @@ files = [
 name = "pyasn1-modules"
 version = "0.4.1"
 description = "A collection of ASN.1-based protocols modules"
-optional = false
+optional = true
 python-versions = ">=3.8"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "pyasn1_modules-0.4.1-py3-none-any.whl", hash = "sha256:49bfa96b45a292b711e986f222502c1c9a5e1f4e568fc30e2574a6c7d07838fd"},
     {file = "pyasn1_modules-0.4.1.tar.gz", hash = "sha256:c28e2dbf9c06ad61c71a075c7e0f9fd0f1b0bb2d2ad4377f240d33ac2ab60a7c"},
@@ -1466,6 +1600,7 @@ version = "2.9.2"
 description = "Data validation using Python type hints"
 optional = false
 python-versions = ">=3.8"
+groups = ["main"]
 files = [
     {file = "pydantic-2.9.2-py3-none-any.whl", hash = "sha256:f048cec7b26778210e28a0459867920654d48e5e62db0958433636cde4254f12"},
     {file = "pydantic-2.9.2.tar.gz", hash = "sha256:d155cef71265d1e9807ed1c32b4c8deec042a44a50a4188b25ac67ecd81a9c0f"},
@@ -1489,6 +1624,7 @@ version = "2.23.4"
 description = "Core functionality for Pydantic validation and serialization"
 optional = false
 python-versions = ">=3.8"
+groups = ["main"]
 files = [
     {file = "pydantic_core-2.23.4-cp310-cp310-macosx_10_12_x86_64.whl", hash = "sha256:b10bd51f823d891193d4717448fab065733958bdb6a6b351967bd349d48d5c9b"},
     {file = "pydantic_core-2.23.4-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:4fc714bdbfb534f94034efaa6eadd74e5b93c8fa6315565a222f7b6f42ca1166"},
@@ -1588,8 +1724,10 @@ typing-extensions = ">=4.6.0,<4.7.0 || >4.7.0"
 name = "pygments"
 version = "2.18.0"
 description = "Pygments is a syntax highlighting package written in Python."
-optional = false
+optional = true
 python-versions = ">=3.8"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "pygments-2.18.0-py3-none-any.whl", hash = "sha256:b8e6aca0523f3ab76fee51799c488e38782ac06eafcf95e7ba832985c8e7b13a"},
     {file = "pygments-2.18.0.tar.gz", hash = "sha256:786ff802f32e91311bff3889f6e9a86e81505fe99f2735bb6d60ae0c5004f199"},
@@ -1602,8 +1740,10 @@ windows-terminal = ["colorama (>=0.4.6)"]
 name = "pyjsg"
 version = "0.11.10"
 description = "Python JSON Schema Grammar interpreter"
-optional = false
+optional = true
 python-versions = "*"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "PyJSG-0.11.10-py3-none-any.whl", hash = "sha256:10af60ff42219be7e85bf7f11c19b648715b0b29eb2ddbd269e87069a7c3f26d"},
     {file = "PyJSG-0.11.10.tar.gz", hash = "sha256:4bd6e3ff2833fa2b395bbe803a2d72a5f0bab5b7285bccd0da1a1bc0aee88bfa"},
@@ -1617,8 +1757,10 @@ jsonasobj = ">=1.2.1"
 name = "pymdown-extensions"
 version = "10.11.2"
 description = "Extension pack for Python Markdown."
-optional = false
+optional = true
 python-versions = ">=3.8"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "pymdown_extensions-10.11.2-py3-none-any.whl", hash = "sha256:41cdde0a77290e480cf53892f5c5e50921a7ee3e5cd60ba91bf19837b33badcf"},
     {file = "pymdown_extensions-10.11.2.tar.gz", hash = "sha256:bc8847ecc9e784a098efd35e20cba772bc5a1b529dfcef9dc1972db9021a1049"},
@@ -1637,6 +1779,7 @@ version = "3.2.0"
 description = "pyparsing module - Classes and methods to define and execute parsing grammars"
 optional = false
 python-versions = ">=3.9"
+groups = ["main"]
 files = [
     {file = "pyparsing-3.2.0-py3-none-any.whl", hash = "sha256:93d9577b88da0bbea8cc8334ee8b918ed014968fd2ec383e868fb8afb1ccef84"},
     {file = "pyparsing-3.2.0.tar.gz", hash = "sha256:cbf74e27246d595d9a74b186b810f6fbb86726dbf3b9532efb343f6d7294fe9c"},
@@ -1649,8 +1792,10 @@ diagrams = ["jinja2", "railroad-diagrams"]
 name = "pyshex"
 version = "0.8.1"
 description = "Python ShEx Implementation"
-optional = false
+optional = true
 python-versions = ">=3.6"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "PyShEx-0.8.1-py3-none-any.whl", hash = "sha256:6da1b10123e191abf8dcb6bf3e54aa3e1fcf771df5d1a0ed453217c8900c8e6a"},
     {file = "PyShEx-0.8.1.tar.gz", hash = "sha256:3c5c4d45fe27faaadae803cb008c41acf8ee784da7868b04fd84967e75be70d0"},
@@ -1671,8 +1816,10 @@ urllib3 = "*"
 name = "pyshexc"
 version = "0.9.1"
 description = "PyShExC - Python ShEx compiler"
-optional = false
+optional = true
 python-versions = ">=3.7"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "PyShExC-0.9.1-py2.py3-none-any.whl", hash = "sha256:efc55ed5cb2453e9df569b03e282505e96bb06597934288f3b23dd980ef10028"},
     {file = "PyShExC-0.9.1.tar.gz", hash = "sha256:35a9975d4b9afeb20ef710fb6680871756381d0c39fbb5470b3b506581a304d3"},
@@ -1690,8 +1837,10 @@ shexjsg = ">=0.8.1"
 name = "pystow"
 version = "0.5.6"
 description = "Easily pick a place to store data for your python package."
-optional = false
+optional = true
 python-versions = ">=3.7"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "pystow-0.5.6-py3-none-any.whl", hash = "sha256:3a44349dccc1260238e8f4c8f2dec5d72e2952a126fb897df663e94e6a910c86"},
     {file = "pystow-0.5.6.tar.gz", hash = "sha256:db567e82a5b7aea34cdcf4ae00ba822cd64a51ae2f465b1995599676e4cdbff2"},
@@ -1716,6 +1865,7 @@ version = "8.3.3"
 description = "pytest: simple powerful testing with Python"
 optional = false
 python-versions = ">=3.8"
+groups = ["main"]
 files = [
     {file = "pytest-8.3.3-py3-none-any.whl", hash = "sha256:a6853c7375b2663155079443d2e45de913a911a11d669df02a50814944db57b2"},
     {file = "pytest-8.3.3.tar.gz", hash = "sha256:70b98107bd648308a7952b06e6ca9a50bc660be218d53c257cc1fc94fda10181"},
@@ -1738,6 +1888,7 @@ version = "2015.11.4"
 description = "Configures logging and allows tweaking the log level with a py.test flag"
 optional = false
 python-versions = "*"
+groups = ["main"]
 files = [
     {file = "pytest-logging-2015.11.4.tar.gz", hash = "sha256:cec5c85ecf18aab7b2ead5498a31b9f758680ef5a902b9054ab3f2bdbb77c896"},
 ]
@@ -1749,8 +1900,10 @@ pytest = ">=2.8.1"
 name = "python-dateutil"
 version = "2.9.0.post0"
 description = "Extensions to the standard Python datetime module"
-optional = false
+optional = true
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,>=2.7"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "python-dateutil-2.9.0.post0.tar.gz", hash = "sha256:37dd54208da7e1cd875388217d5e00ebd4179249f90fb72437e91a35459a0ad3"},
     {file = "python_dateutil-2.9.0.post0-py2.py3-none-any.whl", hash = "sha256:a8b2bc7bffae282281c8140a97d3aa9c14da0b136dfe83f850eea9a5f7470427"},
@@ -1765,6 +1918,7 @@ version = "0.4.0"
 description = "A pure Python implementation of the trie data structure."
 optional = false
 python-versions = "*"
+groups = ["main"]
 files = [
     {file = "PyTrie-0.4.0.tar.gz", hash = "sha256:8f4488f402d3465993fb6b6efa09866849ed8cda7903b50647b7d0342b805379"},
 ]
@@ -1778,6 +1932,7 @@ version = "6.0.2"
 description = "YAML parser and emitter for Python"
 optional = false
 python-versions = ">=3.8"
+groups = ["main"]
 files = [
     {file = "PyYAML-6.0.2-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:0a9a2848a5b7feac301353437eb7d5957887edbf81d56e903999a75a3d743086"},
     {file = "PyYAML-6.0.2-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:29717114e51c84ddfba879543fb232a6ed60086602313ca38cce623c1d62cfbf"},
@@ -1838,8 +1993,10 @@ files = [
 name = "pyyaml-env-tag"
 version = "0.1"
 description = "A custom YAML tag for referencing environment variables in YAML files. "
-optional = false
+optional = true
 python-versions = ">=3.6"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "pyyaml_env_tag-0.1-py3-none-any.whl", hash = "sha256:af31106dec8a4d68c60207c1886031cbf839b68aa7abccdb19868200532c2069"},
     {file = "pyyaml_env_tag-0.1.tar.gz", hash = "sha256:70092675bda14fdec33b31ba77e7543de9ddc88f2e5b99160396572d11525bdb"},
@@ -1854,6 +2011,7 @@ version = "7.1.0"
 description = "RDFLib is a Python library for working with RDF, a simple yet powerful language for representing information."
 optional = false
 python-versions = "<4.0.0,>=3.8.1"
+groups = ["main"]
 files = [
     {file = "rdflib-7.1.0-py3-none-any.whl", hash = "sha256:240c25c6e1b573ffa67aed23aae128e253c443c15291c9a01d8d392ea80c05b6"},
     {file = "rdflib-7.1.0.tar.gz", hash = "sha256:a29a8fccebd3d3a5f1b7e88d92dace1c89829018c7d29a6114fff4449c188b3b"},
@@ -1874,8 +2032,10 @@ orjson = ["orjson (>=3.9.14,<4)"]
 name = "rdflib-jsonld"
 version = "0.6.1"
 description = "rdflib extension adding JSON-LD parser and serializer"
-optional = false
+optional = true
 python-versions = "*"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "rdflib-jsonld-0.6.1.tar.gz", hash = "sha256:eda5a42a2e09f80d4da78e32b5c684bccdf275368f1541e6b7bcddfb1382a0e0"},
     {file = "rdflib_jsonld-0.6.1-py2.py3-none-any.whl", hash = "sha256:bcf84317e947a661bae0a3f2aee1eced697075fc4ac4db6065a3340ea0f10fc2"},
@@ -1888,8 +2048,10 @@ rdflib = ">=5.0.0"
 name = "rdflib-shim"
 version = "1.0.3"
 description = "Shim for rdflib 5 and 6 incompatibilities"
-optional = false
+optional = true
 python-versions = ">=3.7"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "rdflib_shim-1.0.3-py3-none-any.whl", hash = "sha256:7a853e7750ef1e9bf4e35dea27d54e02d4ed087de5a9e0c329c4a6d82d647081"},
     {file = "rdflib_shim-1.0.3.tar.gz", hash = "sha256:d955d11e2986aab42b6830ca56ac6bc9c893abd1d049a161c6de2f1b99d4fc0d"},
@@ -1905,6 +2067,7 @@ version = "0.35.1"
 description = "JSON Referencing + Python"
 optional = false
 python-versions = ">=3.8"
+groups = ["main"]
 files = [
     {file = "referencing-0.35.1-py3-none-any.whl", hash = "sha256:eda6d3234d62814d1c64e305c1331c9a3a6132da475ab6382eaa997b21ee75de"},
     {file = "referencing-0.35.1.tar.gz", hash = "sha256:25b42124a6c8b632a425174f24087783efb348a6f1e0008e63cd4466fedf703c"},
@@ -1920,6 +2083,7 @@ version = "2.32.3"
 description = "Python HTTP for Humans."
 optional = false
 python-versions = ">=3.8"
+groups = ["main"]
 files = [
     {file = "requests-2.32.3-py3-none-any.whl", hash = "sha256:70761cfe03c773ceb22aa2f671b4757976145175cdfca038c02654d061d6dcc6"},
     {file = "requests-2.32.3.tar.gz", hash = "sha256:55365417734eb18255590a9ff9eb97e9e1da868d4ccd6402399eaf68af20a760"},
@@ -1939,8 +2103,10 @@ use-chardet-on-py3 = ["chardet (>=3.0.2,<6)"]
 name = "requests-oauthlib"
 version = "2.0.0"
 description = "OAuthlib authentication support for Requests."
-optional = false
+optional = true
 python-versions = ">=3.4"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "requests-oauthlib-2.0.0.tar.gz", hash = "sha256:b3dffaebd884d8cd778494369603a9e7b58d29111bf6b41bdc2dcd87203af4e9"},
     {file = "requests_oauthlib-2.0.0-py2.py3-none-any.whl", hash = "sha256:7dd8a5c40426b779b0868c404bdef9768deccf22749cde15852df527e6269b36"},
@@ -1957,8 +2123,10 @@ rsa = ["oauthlib[signedtoken] (>=3.0.0)"]
 name = "rfc3339-validator"
 version = "0.1.4"
 description = "A pure python RFC3339 validator"
-optional = false
+optional = true
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "rfc3339_validator-0.1.4-py2.py3-none-any.whl", hash = "sha256:24f6ec1eda14ef823da9e36ec7113124b39c04d50a4d3d3a3c2859577e7791fa"},
     {file = "rfc3339_validator-0.1.4.tar.gz", hash = "sha256:138a2abdf93304ad60530167e51d2dfb9549521a836871b88d7f4695d0022f6b"},
@@ -1971,8 +2139,10 @@ six = "*"
 name = "rfc3987"
 version = "1.3.8"
 description = "Parsing and validation of URIs (RFC 3986) and IRIs (RFC 3987)"
-optional = false
+optional = true
 python-versions = "*"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "rfc3987-1.3.8-py2.py3-none-any.whl", hash = "sha256:10702b1e51e5658843460b189b185c0366d2cf4cff716f13111b0ea9fd2dce53"},
     {file = "rfc3987-1.3.8.tar.gz", hash = "sha256:d3c4d257a560d544e9826b38bc81db676890c79ab9d7ac92b39c7a253d5ca733"},
@@ -1984,6 +2154,7 @@ version = "0.20.0"
 description = "Python bindings to Rust's persistent data structures (rpds)"
 optional = false
 python-versions = ">=3.8"
+groups = ["main"]
 files = [
     {file = "rpds_py-0.20.0-cp310-cp310-macosx_10_12_x86_64.whl", hash = "sha256:3ad0fda1635f8439cde85c700f964b23ed5fc2d28016b32b9ee5fe30da5c84e2"},
     {file = "rpds_py-0.20.0-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:9bb4a0d90fdb03437c109a17eade42dfbf6190408f29b2744114d11586611d6f"},
@@ -2094,8 +2265,10 @@ files = [
 name = "rsa"
 version = "4.9"
 description = "Pure-Python RSA implementation"
-optional = false
+optional = true
 python-versions = ">=3.6,<4"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "rsa-4.9-py3-none-any.whl", hash = "sha256:90260d9058e514786967344d0ef75fa8727eed8a7d2e43ce9f4bcf1b536174f7"},
     {file = "rsa-4.9.tar.gz", hash = "sha256:e38464a49c6c85d7f1351b0126661487a7e0a14a50f1675ec50eb34d4f20ef21"},
@@ -2108,8 +2281,10 @@ pyasn1 = ">=0.1.3"
 name = "ruamel-yaml"
 version = "0.18.6"
 description = "ruamel.yaml is a YAML parser/emitter that supports roundtrip preservation of comments, seq/map flow style, and map key order"
-optional = false
+optional = true
 python-versions = ">=3.7"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "ruamel.yaml-0.18.6-py3-none-any.whl", hash = "sha256:57b53ba33def16c4f3d807c0ccbc00f8a6081827e81ba2491691b76882d0c636"},
     {file = "ruamel.yaml-0.18.6.tar.gz", hash = "sha256:8b27e6a217e786c6fbe5634d8f3f11bc63e0f80f6a5890f28863d9c45aac311b"},
@@ -2126,8 +2301,10 @@ jinja2 = ["ruamel.yaml.jinja2 (>=0.2)"]
 name = "ruamel-yaml-clib"
 version = "0.2.12"
 description = "C version of reader, parser and emitter for ruamel.yaml derived from libyaml"
-optional = false
+optional = true
 python-versions = ">=3.9"
+groups = ["main"]
+markers = "(extra == \"docs\" or extra == \"dev\") and python_version < \"3.13\" and platform_python_implementation == \"CPython\""
 files = [
     {file = "ruamel.yaml.clib-0.2.12-cp310-cp310-macosx_13_0_arm64.whl", hash = "sha256:11f891336688faf5156a36293a9c362bdc7c88f03a8a027c2c1d8e0bcde998e5"},
     {file = "ruamel.yaml.clib-0.2.12-cp310-cp310-manylinux2014_aarch64.whl", hash = "sha256:a606ef75a60ecf3d924613892cc603b154178ee25abb3055db5062da811fd969"},
@@ -2176,8 +2353,10 @@ files = [
 name = "schemasheets"
 version = "0.1.24"
 description = "Package to author schemas using spreadsheets"
-optional = false
+optional = true
 python-versions = ">=3.9,<4.0"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "schemasheets-0.1.24-py3-none-any.whl", hash = "sha256:b7ebceb28e6cd61bbe743945d54e5d45540e794cfc0432b52cb228af8015c4cc"},
     {file = "schemasheets-0.1.24.tar.gz", hash = "sha256:af18b1012994989cd6c811b770ed547ac52067a640e04b5a4a63cf32306dab3a"},
@@ -2194,8 +2373,10 @@ ontodev-cogs = ">=0.3.3,<0.4.0"
 name = "setuptools"
 version = "75.2.0"
 description = "Easily download, build, install, upgrade, and uninstall Python packages"
-optional = false
+optional = true
 python-versions = ">=3.8"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "setuptools-75.2.0-py3-none-any.whl", hash = "sha256:a7fcb66f68b4d9e8e66b42f9876150a3371558f98fa32222ffaa5bced76406f8"},
     {file = "setuptools-75.2.0.tar.gz", hash = "sha256:753bb6ebf1f465a1912e19ed1d41f403a79173a9acf66a42e7e6aec45c3c16ec"},
@@ -2214,8 +2395,10 @@ type = ["importlib-metadata (>=7.0.2)", "jaraco.develop (>=7.21)", "mypy (==1.11
 name = "shexjsg"
 version = "0.8.2"
 description = "ShExJSG - Astract Syntax Tree for the ShEx 2.0 language"
-optional = false
+optional = true
 python-versions = "*"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "ShExJSG-0.8.2-py2.py3-none-any.whl", hash = "sha256:3b0d8432dd313bee9e1343382c5e02e9908dd941a7dd7342bf8c0200fe523766"},
     {file = "ShExJSG-0.8.2.tar.gz", hash = "sha256:f17a629fc577fa344382bdee143cd9ff86588537f9f811f66cea6f63cdbcd0b6"},
@@ -2228,8 +2411,10 @@ pyjsg = ">=0.11.10"
 name = "six"
 version = "1.16.0"
 description = "Python 2 and 3 compatibility utilities"
-optional = false
+optional = true
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "six-1.16.0-py2.py3-none-any.whl", hash = "sha256:8abb2f1d86890a2dfb989f9a77cfcfd3e47c2a354b01111771326f8aa26e0254"},
     {file = "six-1.16.0.tar.gz", hash = "sha256:1e61c37477a1626458e36f7b1d82aa5c9b094fa4802892072e49de9c60c4c926"},
@@ -2241,6 +2426,7 @@ version = "2.4.0"
 description = "Sorted Containers -- Sorted List, Sorted Dict, Sorted Set"
 optional = false
 python-versions = "*"
+groups = ["main"]
 files = [
     {file = "sortedcontainers-2.4.0-py2.py3-none-any.whl", hash = "sha256:a163dcaede0f1c021485e957a39245190e74249897e2ae4b2aa38595db237ee0"},
     {file = "sortedcontainers-2.4.0.tar.gz", hash = "sha256:25caa5a06cc30b6b83d11423433f65d1f9d76c4c6a0c90e3379eaa43b9bfdb88"},
@@ -2250,8 +2436,10 @@ files = [
 name = "soupsieve"
 version = "2.6"
 description = "A modern CSS selector implementation for Beautiful Soup."
-optional = false
+optional = true
 python-versions = ">=3.8"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "soupsieve-2.6-py3-none-any.whl", hash = "sha256:e72c4ff06e4fb6e4b5a9f0f55fe6e81514581fca1515028625d0f299c602ccc9"},
     {file = "soupsieve-2.6.tar.gz", hash = "sha256:e2e68417777af359ec65daac1057404a3c8a5455bb8abc36f1a9866ab1a51abb"},
@@ -2261,8 +2449,10 @@ files = [
 name = "sparqlslurper"
 version = "0.5.1"
 description = "SPARQL Slurper for rdflib"
-optional = false
+optional = true
 python-versions = ">=3.7.4"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "sparqlslurper-0.5.1-py3-none-any.whl", hash = "sha256:ae49b2d8ce3dd38df7a40465b228ad5d33fb7e11b3f248d195f9cadfc9cfff87"},
     {file = "sparqlslurper-0.5.1.tar.gz", hash = "sha256:9282ebb064fc6152a58269d194cb1e7b275b0f095425a578d75b96dcc851f546"},
@@ -2277,8 +2467,10 @@ sparqlwrapper = ">=1.8.2"
 name = "sparqlwrapper"
 version = "2.0.0"
 description = "SPARQL Endpoint interface to Python"
-optional = false
+optional = true
 python-versions = ">=3.7"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "SPARQLWrapper-2.0.0-py3-none-any.whl", hash = "sha256:c99a7204fff676ee28e6acef327dc1ff8451c6f7217dcd8d49e8872f324a8a20"},
     {file = "SPARQLWrapper-2.0.0.tar.gz", hash = "sha256:3fed3ebcc77617a4a74d2644b86fd88e0f32e7f7003ac7b2b334c026201731f1"},
@@ -2297,8 +2489,10 @@ pandas = ["pandas (>=1.3.5)"]
 name = "sqlalchemy"
 version = "2.0.36"
 description = "Database Abstraction Library"
-optional = false
+optional = true
 python-versions = ">=3.7"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "SQLAlchemy-2.0.36-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:59b8f3adb3971929a3e660337f5dacc5942c2cdb760afcabb2614ffbda9f9f72"},
     {file = "SQLAlchemy-2.0.36-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:37350015056a553e442ff672c2d20e6f4b6d0b2495691fa239d8aa18bb3bc908"},
@@ -2392,8 +2586,10 @@ sqlcipher = ["sqlcipher3_binary"]
 name = "tabulate"
 version = "0.9.0"
 description = "Pretty-print tabular data"
-optional = false
+optional = true
 python-versions = ">=3.7"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "tabulate-0.9.0-py3-none-any.whl", hash = "sha256:024ca478df22e9340661486f85298cff5f6dcdba14f3813e8830015b9ed1948f"},
     {file = "tabulate-0.9.0.tar.gz", hash = "sha256:0095b12bf5966de529c0feb1fa08671671b3368eec77d7ef7ab114be2c068b3c"},
@@ -2406,8 +2602,10 @@ widechars = ["wcwidth"]
 name = "termcolor"
 version = "2.5.0"
 description = "ANSI color formatting for output in terminal"
-optional = false
+optional = true
 python-versions = ">=3.9"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "termcolor-2.5.0-py3-none-any.whl", hash = "sha256:37b17b5fc1e604945c2642c872a3764b5d547a48009871aea3edd3afa180afb8"},
     {file = "termcolor-2.5.0.tar.gz", hash = "sha256:998d8d27da6d48442e8e1f016119076b690d962507531df4890fcd2db2ef8a6f"},
@@ -2422,6 +2620,8 @@ version = "2.0.2"
 description = "A lil' TOML parser"
 optional = false
 python-versions = ">=3.8"
+groups = ["main"]
+markers = "python_version < \"3.11\""
 files = [
     {file = "tomli-2.0.2-py3-none-any.whl", hash = "sha256:2ebe24485c53d303f690b0ec092806a085f07af5a5aa1464f3931eec36caaa38"},
     {file = "tomli-2.0.2.tar.gz", hash = "sha256:d46d457a85337051c36524bc5349dd91b1877838e2979ac5ced3e710ed8a60ed"},
@@ -2431,8 +2631,10 @@ files = [
 name = "tqdm"
 version = "4.66.5"
 description = "Fast, Extensible Progress Meter"
-optional = false
+optional = true
 python-versions = ">=3.7"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "tqdm-4.66.5-py3-none-any.whl", hash = "sha256:90279a3770753eafc9194a0364852159802111925aa30eb3f9d85b0e805ac7cd"},
     {file = "tqdm-4.66.5.tar.gz", hash = "sha256:e1020aef2e5096702d8a025ac7d16b1577279c9d63f8375b63083e9a5f0fcbad"},
@@ -2451,8 +2653,10 @@ telegram = ["requests"]
 name = "types-python-dateutil"
 version = "2.9.0.20241003"
 description = "Typing stubs for python-dateutil"
-optional = false
+optional = true
 python-versions = ">=3.8"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "types-python-dateutil-2.9.0.20241003.tar.gz", hash = "sha256:58cb85449b2a56d6684e41aeefb4c4280631246a0da1a719bdbe6f3fb0317446"},
     {file = "types_python_dateutil-2.9.0.20241003-py3-none-any.whl", hash = "sha256:250e1d8e80e7bbc3a6c99b907762711d1a1cdd00e978ad39cb5940f6f0a87f3d"},
@@ -2464,6 +2668,7 @@ version = "4.12.2"
 description = "Backported and Experimental Type Hints for Python 3.8+"
 optional = false
 python-versions = ">=3.8"
+groups = ["main"]
 files = [
     {file = "typing_extensions-4.12.2-py3-none-any.whl", hash = "sha256:04e5ca0351e0f3f85c6853954072df659d0d13fac324d0072316b67d7794700d"},
     {file = "typing_extensions-4.12.2.tar.gz", hash = "sha256:1a7ead55c7e559dd4dee8856e3a88b41225abfe1ce8df57b7c13915fe121ffb8"},
@@ -2473,8 +2678,10 @@ files = [
 name = "uri-template"
 version = "1.3.0"
 description = "RFC 6570 URI Template Processor"
-optional = false
+optional = true
 python-versions = ">=3.7"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "uri-template-1.3.0.tar.gz", hash = "sha256:0e00f8eb65e18c7de20d595a14336e9f337ead580c70934141624b6d1ffdacc7"},
     {file = "uri_template-1.3.0-py3-none-any.whl", hash = "sha256:a44a133ea12d44a0c0f06d7d42a52d71282e77e2f937d8abd5655b8d56fc1363"},
@@ -2487,8 +2694,10 @@ dev = ["flake8", "flake8-annotations", "flake8-bandit", "flake8-bugbear", "flake
 name = "uritemplate"
 version = "4.1.1"
 description = "Implementation of RFC 6570 URI Templates"
-optional = false
+optional = true
 python-versions = ">=3.6"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "uritemplate-4.1.1-py2.py3-none-any.whl", hash = "sha256:830c08b8d99bdd312ea4ead05994a38e8936266f84b9a7878232db50b044e02e"},
     {file = "uritemplate-4.1.1.tar.gz", hash = "sha256:4346edfc5c3b79f694bccd6d6099a322bbeb628dbf2cd86eea55a456ce5124f0"},
@@ -2500,6 +2709,7 @@ version = "2.2.3"
 description = "HTTP library with thread-safe connection pooling, file post, and more."
 optional = false
 python-versions = ">=3.8"
+groups = ["main"]
 files = [
     {file = "urllib3-2.2.3-py3-none-any.whl", hash = "sha256:ca899ca043dcb1bafa3e262d73aa25c465bfb49e0bd9dd5d59f1d0acba2f8fac"},
     {file = "urllib3-2.2.3.tar.gz", hash = "sha256:e7d814a81dad81e6caf2ec9fdedb284ecc9c73076b62654547cc64ccdcae26e9"},
@@ -2515,8 +2725,10 @@ zstd = ["zstandard (>=0.18.0)"]
 name = "watchdog"
 version = "5.0.3"
 description = "Filesystem events monitoring"
-optional = false
+optional = true
 python-versions = ">=3.9"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "watchdog-5.0.3-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:85527b882f3facda0579bce9d743ff7f10c3e1e0db0a0d0e28170a7d0e5ce2ea"},
     {file = "watchdog-5.0.3-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:53adf73dcdc0ef04f7735066b4a57a4cd3e49ef135daae41d77395f0b5b692cb"},
@@ -2557,8 +2769,10 @@ watchmedo = ["PyYAML (>=3.10)"]
 name = "webcolors"
 version = "24.8.0"
 description = "A library for working with the color formats defined by HTML and CSS."
-optional = false
+optional = true
 python-versions = ">=3.8"
+groups = ["main"]
+markers = "extra == \"docs\" or extra == \"dev\""
 files = [
     {file = "webcolors-24.8.0-py3-none-any.whl", hash = "sha256:fc4c3b59358ada164552084a8ebee637c221e4059267d0f8325b3b560f6c7f0a"},
     {file = "webcolors-24.8.0.tar.gz", hash = "sha256:08b07af286a01bcd30d583a7acadf629583d1f79bfef27dd2c2c5c263817277d"},
@@ -2574,6 +2788,7 @@ version = "1.16.0"
 description = "Module for decorators, wrappers and monkey patching."
 optional = false
 python-versions = ">=3.6"
+groups = ["main"]
 files = [
     {file = "wrapt-1.16.0-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:ffa565331890b90056c01db69c0fe634a776f8019c143a5ae265f9c6bc4bd6d4"},
     {file = "wrapt-1.16.0-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:e4fdb9275308292e880dcbeb12546df7f3e0f96c6b41197e0cf37d2826359020"},
@@ -2651,8 +2866,10 @@ files = [
 name = "zipp"
 version = "3.21.0"
 description = "Backport of pathlib-compatible object wrapper for zip files"
-optional = false
+optional = true
 python-versions = ">=3.9"
+groups = ["main"]
+markers = "extra == \"docs\" and python_version < \"3.10\" or extra == \"dev\" and python_version < \"3.10\""
 files = [
     {file = "zipp-3.21.0-py3-none-any.whl", hash = "sha256:ac1bbe05fd2991f160ebce24ffbac5f6d11d83dc90891255885223d42b3cd931"},
     {file = "zipp-3.21.0.tar.gz", hash = "sha256:2c9958f6430a2040341a52eb608ed6dd93ef4392e02ffe219417c1b28b5dd1f4"},
@@ -2667,9 +2884,10 @@ test = ["big-O", "importlib-resources", "jaraco.functools", "jaraco.itertools",
 type = ["pytest-mypy"]
 
 [extras]
-docs = []
+dev = ["linkml", "mkdocs-material", "mkdocs-mermaid2-plugin", "schemasheets"]
+docs = ["mkdocs-material", "mkdocs-mermaid2-plugin", "schemasheets"]
 
 [metadata]
-lock-version = "2.0"
-python-versions = "^3.9"
-content-hash = "8b05931d3e85c3a40d6a2db392774a318b4063d5ac25435fb4a4b6320f9db72f"
+lock-version = "2.1"
+python-versions = ">=3.9,<4.0"
+content-hash = "74910983e92e50abf390b3fd35e77cbe05a5587da6a432b78dd19ae07a4d0a29"
diff --git a/pyproject.toml b/pyproject.toml
index 677c2c4..ec90d7a 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,32 +1,56 @@
-
 [build-system]
 requires = ["poetry-core>=1.0.0", "poetry-dynamic-versioning"]
 build-backend = "poetry_dynamic_versioning.backend"
 
-[tool.poetry]
+[project]
 name = "pid4cat_model"
-version = "0.1.0"
 description = "LinkML model for handle-based PIDs for resources in catalysis (PID4Cat)"
-authors = ["David Linke <david.linke@catalysis.de>"]
-license = "MIT"
+authors = [
+  # Authors sorted by number of commits
+  {name = "David Linke", email = "david.linke@catalysis.de"},
+]
+maintainers = [
+  {name = "David Linke", email = "david.linke@catalysis.de"},
+]
+license = {text = "MIT"}
 readme = "README.md"
 include = ["README.md", "src/pid4cat_model/schema",  "project"]
 
+requires-python = ">=3.9"
+
+dynamic = ["version"]
+
+dependencies = [
+  # "requests (>=2.23.0,<3.0.0)"  # example
+  "linkml-runtime >=1.8.0",
+]
+
+[project.optional-dependencies]
+docs = [
+  "mkdocs-material >=8.2.8",
+  "mkdocs-mermaid2-plugin >=1.1.1",
+  "schemasheets >= 0.1.14",
+]
+dev = [
+  # "pid4cat_model[docs]",  # no support for recursive optional dependencies: poetry#3369
+  "mkdocs-material >=8.2.8",
+  "mkdocs-mermaid2-plugin >=1.1.1",
+  "schemasheets >= 0.1.14",
+  # end repeated docs extra
+  "linkml >= 1.8.5",
+]
+
+[tool.poetry]
+requires-poetry = ">=2.0"
+version = "0.0.0"
+
 [tool.poetry.dependencies]
-python = "^3.9"
-linkml-runtime = "^1.1.24"
+python = ">=3.9,<4.0"  # poetry needs an upper bound for locking
+
+[tool.poetry.requires-plugins]
+poetry-dynamic-versioning = ">=1.5.0"
 
 [tool.poetry-dynamic-versioning]
 enable = true
 vcs = "git"
 style = "pep440"
-
-[tool.poetry.group.dev.dependencies]
-linkml = "^1.8.5"
-mkdocs-material = "^8.2.8"
-mkdocs-mermaid2-plugin = "^1.1.1"
-schemasheets = "^0.1.14"
-
-[tool.poetry.extras]
-# This part is invalid. Will fix for poerty 2.0.0.
-docs = ["linkml", "mkdocs-material"]

From 3d88f97805bee33696656423cd7404e7131fc7a3 Mon Sep 17 00:00:00 2001
From: David Linke <dr.david.linke@gmail.com>
Date: Sun, 5 Jan 2025 20:20:14 +0100
Subject: [PATCH 2/2] Improve use of poetry in actions

---
 .github/workflows/main.yaml         | 5 +----
 .github/workflows/pypi-publish.yaml | 4 ----
 2 files changed, 1 insertion(+), 8 deletions(-)

diff --git a/.github/workflows/main.yaml b/.github/workflows/main.yaml
index 5ef2d4a..a009722 100644
--- a/.github/workflows/main.yaml
+++ b/.github/workflows/main.yaml
@@ -28,11 +28,8 @@ jobs:
       - name: Install Poetry
         run: pipx install poetry
 
-      - name: Install dependencies
-        run: poetry install --no-interaction --no-root
-
       - name: Install project
-        run: poetry install --no-interaction
+        run: poetry install --no-interaction -E docs -E dev
 
       - name: Run test suite
         run: make test
diff --git a/.github/workflows/pypi-publish.yaml b/.github/workflows/pypi-publish.yaml
index 26142f0..65515dd 100644
--- a/.github/workflows/pypi-publish.yaml
+++ b/.github/workflows/pypi-publish.yaml
@@ -29,10 +29,6 @@ jobs:
       - name: Install Poetry
         run: |
           pipx install poetry
-          poetry self add "poetry-dynamic-versioning[plugin]"
-
-      # - name: Install dependencies
-      #   run: poetry install --no-interaction
 
       - name: Build source and wheel archives
         run: poetry build