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Implement conversion from GTF to the UCSC format required by rose #3

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nictru opened this issue Apr 20, 2024 · 0 comments · Fixed by #5
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Implement conversion from GTF to the UCSC format required by rose #3

nictru opened this issue Apr 20, 2024 · 0 comments · Fixed by #5
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nictru commented Apr 20, 2024 •
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Description of feature

The UCSC format required by Rose is a rather exotic file format and the developers only provide files for mouse and human. There is an nf-core module for converting GTF to genePred files available here. After this we should be able to follow the guide from the issue in the ROSE repo
@nictru nictru added the enhancement New feature or request label Apr 20, 2024
@nictru nictru self-assigned this Apr 24, 2024
@nictru nictru linked a pull request Apr 25, 2024 that will close this issue
Simplify rose #5
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@nictru nictru closed this as completed in #5 May 1, 2024
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Simplify rose nf-core/tfactivity
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