diff --git a/subworkflows/local/peaks.nf b/subworkflows/local/peaks.nf index c6cce2b..f838164 100644 --- a/subworkflows/local/peaks.nf +++ b/subworkflows/local/peaks.nf @@ -1,7 +1,6 @@ // Modules include { GAWK as CLEAN_BED } from '../../modules/nf-core/gawk/main' include { BEDTOOLS_SORT as SORT_PEAKS } from '../../modules/nf-core/bedtools/sort/main' -include { BEDTOOLS_SUBTRACT as BLACKLIST } from '../../modules/nf-core/bedtools/subtract/main' include { STARE } from '../../modules/local/stare/main' include { COMBINE_TABLES as AFFINITY_MEAN } from '../../modules/local/combine_tables/main' include { COMBINE_TABLES as AFFINITY_RATIO} from '../../modules/local/combine_tables/main' diff --git a/subworkflows/local/ranking.nf b/subworkflows/local/ranking.nf index 4b9fe5f..25c46b4 100644 --- a/subworkflows/local/ranking.nf +++ b/subworkflows/local/ranking.nf @@ -32,6 +32,11 @@ workflow RANKING { .map{ rankings -> [[id: "all"], rankings]} ) + ch_versions = ch_versions.mix(TF_TG_SCORE.out.versions, + CREATE_RANKING.out.versions, + COMBINE_RANKINGS.out.versions + ) + emit: assay_specific = CREATE_RANKING.out.ranking