AWSmegatests are failing

[FriederikeHanssen]

Description of the bug

Hey! I noticed the megatests are not passing. I bumped the memory for SAMTOOLS_SORT which helps, but it now fails at a subsequent step MISO RUN: https://cloud.seqera.io/orgs/nf-core/workspaces/AWSmegatests/watch/4X2hsSILSFWbba

I have attempted both with and with scratch = true for this step.

here is a PR were I started addressing the memory bump: #143

Command used and terminal output

No response

Relevant files

No response

System information

No response

[jma1991]

Hi Friederike,

Sorry for the slow reply, and thanks for flagging the test failure! Could you point me to where I can see the mega tests failing? The link you shared just brings me to an empty Seqera Cloud dashboard for my GitHub account. Thanks so much!

[FriederikeHanssen]

I think I need to add you to the workspace. Which email would work for you?

[jma1991]

Okay, no problem. Please could you add [email protected] email?

[FriederikeHanssen]

Added you :)

[jma1991]

Thank you so much! I've raised an issue with the MISO developers since the error is a bit puzzling. Hopefully, with their help, we'll be able to get it sorted out soon.