From dad7ffdde7f3a88bda6616206649f0700fccddd7 Mon Sep 17 00:00:00 2001 From: jesseangelis Date: Thu, 6 Jun 2024 09:43:24 +0200 Subject: [PATCH] Update dIF definition --- docs/usage.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/usage.md b/docs/usage.md index b675d44..797c542 100644 --- a/docs/usage.md +++ b/docs/usage.md @@ -191,7 +191,7 @@ Prior to DEXSeq DTU analysis, filtering of genes and features with low expressio ### IsoformSwitchAnalyzeR IsoformSwitchAnalyzeR as described by [Vitting-Seerup et al., 2019](https://doi.org/10.1093/bioinformatics/btz247) performs a genome-wide analysis of splicing patterns and identifies isoform switches. It takes a salmon results directory as input so either `--source fastq` or `--source salmon_results` must be given. Two parameters can be set: -`--isoformswitchanalyzer_alpha` sets the significance threshold and `--isoformswitchanalyzer_dIF` sets the minimum absolute difference in isoform expression. +`--isoformswitchanalyzer_alpha` sets the significance threshold and `--isoformswitchanalyzer_dIF` sets the minimum absolute difference in isoform usage. ## Event based approaches