From 0e5f2eca5ab8ebaab17cd294b2981959dec1e1de Mon Sep 17 00:00:00 2001 From: maxulysse Date: Tue, 10 Oct 2023 11:27:53 +0200 Subject: [PATCH] add zenodo doi --- README.md | 5 ++--- lib/WorkflowMain.groovy | 5 ++--- nextflow.config | 2 +- 3 files changed, 5 insertions(+), 7 deletions(-) diff --git a/README.md b/README.md index 4c673db..b5b3d8c 100644 --- a/README.md +++ b/README.md @@ -1,7 +1,7 @@ # ![nf-core/rnasplice](docs/images/nf-core-rnasplice_logo_light.png#gh-light-mode-only) ![nf-core/rnasplice](docs/images/nf-core-rnasplice_logo_dark.png#gh-dark-mode-only) [![GitHub Actions CI Status](https://github.com/nf-core/rnasplice/workflows/nf-core%20CI/badge.svg)](https://github.com/nf-core/rnasplice/actions?query=workflow%3A%22nf-core+CI%22) -[![GitHub Actions Linting Status](https://github.com/nf-core/rnasplice/workflows/nf-core%20linting/badge.svg)](https://github.com/nf-core/rnasplice/actions?query=workflow%3A%22nf-core+linting%22)[![AWS CI](https://img.shields.io/badge/CI%20tests-full%20size-FF9900?labelColor=000000&logo=Amazon%20AWS)](https://nf-co.re/rnasplice/results)[![Cite with Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.XXXXXXX-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.XXXXXXX) +[![GitHub Actions Linting Status](https://github.com/nf-core/rnasplice/workflows/nf-core%20linting/badge.svg)](https://github.com/nf-core/rnasplice/actions?query=workflow%3A%22nf-core+linting%22)[![AWS CI](https://img.shields.io/badge/CI%20tests-full%20size-FF9900?labelColor=000000&logo=Amazon%20AWS)](https://nf-co.re/rnasplice/results)[![Cite with Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.8424632-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.8424632) [![Nextflow](https://img.shields.io/badge/nextflow%20DSL2-%E2%89%A523.04.0-23aa62.svg)](https://www.nextflow.io/) [![run with conda](http://img.shields.io/badge/run%20with-conda-3EB049?labelColor=000000&logo=anaconda)](https://docs.conda.io/en/latest/) @@ -115,8 +115,7 @@ For further information or help, don't hesitate to get in touch on the [Slack `# ## Citations - - +If you use nf-core/rnasplice for your analysis, please cite it using the following doi: [10.5281/zenodo.8424632](https://doi.org/10.5281/zenodo.8424632) An extensive list of references for the tools used by the pipeline can be found in the [`CITATIONS.md`](CITATIONS.md) file. diff --git a/lib/WorkflowMain.groovy b/lib/WorkflowMain.groovy index 1fa8a71..64fe5bb 100755 --- a/lib/WorkflowMain.groovy +++ b/lib/WorkflowMain.groovy @@ -11,9 +11,8 @@ class WorkflowMain { // public static String citation(workflow) { return "If you use ${workflow.manifest.name} for your analysis please cite:\n\n" + - // TODO nf-core: Add Zenodo DOI for pipeline after first release - //"* The pipeline\n" + - //" https://doi.org/10.5281/zenodo.XXXXXXX\n\n" + + "* The pipeline\n" + + " https://doi.org/10.5281/zenodo.8424632\n\n" + "* The nf-core framework\n" + " https://doi.org/10.1038/s41587-020-0439-x\n\n" + "* Software dependencies\n" + diff --git a/nextflow.config b/nextflow.config index 88bac93..8560c12 100644 --- a/nextflow.config +++ b/nextflow.config @@ -353,7 +353,7 @@ manifest { mainScript = 'main.nf' nextflowVersion = '!>=23.04.0' version = '1.0.0' - doi = '' + doi = '10.5281/zenodo.8424632' } // Load modules.config for DSL2 module specific options