diff --git a/modules/local/rmats_prep_single.nf b/modules/local/rmats_prep_single.nf index cf52b37..4373796 100644 --- a/modules/local/rmats_prep_single.nf +++ b/modules/local/rmats_prep_single.nf @@ -57,7 +57,7 @@ process RMATS_PREP_SINGLE { """ rmats.py \\ - --b1 $bam_group1 \\ + --b1 $bam1 \\ -t $read_type \\ --libType $strandedness \\ --nthread $task.cpus \\