From dca14c5486fe2b1de4754d4b486032517ca2037b Mon Sep 17 00:00:00 2001 From: Jonathan Manning Date: Wed, 16 Oct 2024 13:59:48 +0100 Subject: [PATCH 1/3] Bump versions back to 3.17.0 after release --- CHANGELOG.md | 7 +++++++ nextflow.config | 2 +- tests/default.nf.test.snap | 4 ++-- tests/featurecounts_group_type.nf.test.snap | 4 ++-- tests/hisat2.nf.test.snap | 4 ++-- tests/kallisto.nf.test.snap | 4 ++-- tests/min_mapped_reads.nf.test.snap | 4 ++-- tests/remove_ribo_rna.nf.test.snap | 4 ++-- tests/salmon.nf.test.snap | 4 ++-- tests/skip_qc.nf.test.snap | 4 ++-- tests/skip_trimming.nf.test.snap | 2 +- tests/star_rsem.nf.test.snap | 4 ++-- workflows/rnaseq/assets/multiqc/multiqc_config.yml | 2 +- 13 files changed, 28 insertions(+), 21 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index fe18aecee..a9236eb9d 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -3,6 +3,13 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). +## dev + +### Credits + +### Enhancements & fixes + + ## [[3.16.1](https://github.com/nf-core/rnaseq/releases/tag/3.16.1)] - 2024-10-16 ### Credits diff --git a/nextflow.config b/nextflow.config index 496a9429f..84ef3cabf 100644 --- a/nextflow.config +++ b/nextflow.config @@ -327,7 +327,7 @@ manifest { description = """RNA sequencing analysis pipeline for gene/isoform quantification and extensive quality control.""" mainScript = 'main.nf' nextflowVersion = '!>=24.04.2' - version = '3.16.1' + version = '3.17.0dev' doi = 'https://doi.org/10.5281/zenodo.1400710' } diff --git a/tests/default.nf.test.snap b/tests/default.nf.test.snap index c9981b3d1..ea663624c 100644 --- a/tests/default.nf.test.snap +++ b/tests/default.nf.test.snap @@ -43,7 +43,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.16.1" + "nf-core/rnaseq": "v3.17.0dev" } }, [ @@ -227,7 +227,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.16.1" + "nf-core/rnaseq": "v3.17.0dev" } }, [ diff --git a/tests/featurecounts_group_type.nf.test.snap b/tests/featurecounts_group_type.nf.test.snap index b14b204a7..9630b4c5d 100644 --- a/tests/featurecounts_group_type.nf.test.snap +++ b/tests/featurecounts_group_type.nf.test.snap @@ -43,7 +43,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.16.1" + "nf-core/rnaseq": "v3.17.0dev" } }, [ @@ -221,7 +221,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.16.1" + "nf-core/rnaseq": "v3.17.0dev" } }, [ diff --git a/tests/hisat2.nf.test.snap b/tests/hisat2.nf.test.snap index dd6b9d23e..f6fe94c7e 100644 --- a/tests/hisat2.nf.test.snap +++ b/tests/hisat2.nf.test.snap @@ -44,7 +44,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.16.1" + "nf-core/rnaseq": "v3.17.0dev" } }, [ @@ -224,7 +224,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.16.1" + "nf-core/rnaseq": "v3.17.0dev" } }, [ diff --git a/tests/kallisto.nf.test.snap b/tests/kallisto.nf.test.snap index 4cc4ac925..215a901a4 100644 --- a/tests/kallisto.nf.test.snap +++ b/tests/kallisto.nf.test.snap @@ -56,7 +56,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.16.1" + "nf-core/rnaseq": "v3.17.0dev" } }, [ @@ -294,7 +294,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.16.1" + "nf-core/rnaseq": "v3.17.0dev" } }, [ diff --git a/tests/min_mapped_reads.nf.test.snap b/tests/min_mapped_reads.nf.test.snap index 2799bc339..a494f6029 100644 --- a/tests/min_mapped_reads.nf.test.snap +++ b/tests/min_mapped_reads.nf.test.snap @@ -134,7 +134,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.16.1" + "nf-core/rnaseq": "v3.17.0dev" } }, [ @@ -1221,7 +1221,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.16.1" + "nf-core/rnaseq": "v3.17.0dev" } }, [ diff --git a/tests/remove_ribo_rna.nf.test.snap b/tests/remove_ribo_rna.nf.test.snap index 4b477e6a7..f10e886fe 100644 --- a/tests/remove_ribo_rna.nf.test.snap +++ b/tests/remove_ribo_rna.nf.test.snap @@ -140,7 +140,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.16.1" + "nf-core/rnaseq": "v3.17.0dev" } }, [ @@ -1435,7 +1435,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.16.1" + "nf-core/rnaseq": "v3.17.0dev" } }, [ diff --git a/tests/salmon.nf.test.snap b/tests/salmon.nf.test.snap index 0293e72fa..451c2918f 100644 --- a/tests/salmon.nf.test.snap +++ b/tests/salmon.nf.test.snap @@ -50,7 +50,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.16.1" + "nf-core/rnaseq": "v3.17.0dev" } }, [ @@ -367,7 +367,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.16.1" + "nf-core/rnaseq": "v3.17.0dev" } }, [ diff --git a/tests/skip_qc.nf.test.snap b/tests/skip_qc.nf.test.snap index 70b17efcb..476f26117 100644 --- a/tests/skip_qc.nf.test.snap +++ b/tests/skip_qc.nf.test.snap @@ -40,7 +40,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.16.1" + "nf-core/rnaseq": "v3.17.0dev" } }, [ @@ -169,7 +169,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.16.1" + "nf-core/rnaseq": "v3.17.0dev" } }, [ diff --git a/tests/skip_trimming.nf.test.snap b/tests/skip_trimming.nf.test.snap index bfc0873a4..82acf3cfd 100644 --- a/tests/skip_trimming.nf.test.snap +++ b/tests/skip_trimming.nf.test.snap @@ -130,7 +130,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.16.1" + "nf-core/rnaseq": "v3.17.0dev" } }, [ diff --git a/tests/star_rsem.nf.test.snap b/tests/star_rsem.nf.test.snap index d46ed0819..9d17e1f2d 100644 --- a/tests/star_rsem.nf.test.snap +++ b/tests/star_rsem.nf.test.snap @@ -134,7 +134,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.16.1" + "nf-core/rnaseq": "v3.17.0dev" } }, [ @@ -1314,7 +1314,7 @@ "untar": 1.34 }, "Workflow": { - "nf-core/rnaseq": "v3.16.1" + "nf-core/rnaseq": "v3.17.0dev" } }, [ diff --git a/workflows/rnaseq/assets/multiqc/multiqc_config.yml b/workflows/rnaseq/assets/multiqc/multiqc_config.yml index 260cc8c1d..9b8ee731a 100644 --- a/workflows/rnaseq/assets/multiqc/multiqc_config.yml +++ b/workflows/rnaseq/assets/multiqc/multiqc_config.yml @@ -1,5 +1,5 @@ report_comment: > - This report has been generated by the nf-core/rnaseq analysis pipeline. For information about how to interpret these results, please see the documentation. + This report has been generated by the nf-core/rnaseq analysis pipeline. For information about how to interpret these results, please see the documentation. report_section_order: # Important checks and failures sample-status: From 4336b2b37d3f7e45c5621699366e8372f9682aad Mon Sep 17 00:00:00 2001 From: Jonathan Manning Date: Wed, 16 Oct 2024 14:02:11 +0100 Subject: [PATCH 2/3] Update CHANGELOG --- CHANGELOG.md | 2 ++ 1 file changed, 2 insertions(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index a9236eb9d..84abc9860 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -9,6 +9,8 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 ### Enhancements & fixes +- [PR #1418](https://github.com/nf-core/rnaseq/pull/1418) - Bump versions back to 3.17.0 after release + ## [[3.16.1](https://github.com/nf-core/rnaseq/releases/tag/3.16.1)] - 2024-10-16 From f919609edce138ab498bbe0a4739f7239e5da9ea Mon Sep 17 00:00:00 2001 From: Jonathan Manning Date: Wed, 16 Oct 2024 14:17:08 +0100 Subject: [PATCH 3/3] Prettier --- CHANGELOG.md | 1 - 1 file changed, 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 84abc9860..07cc4de8d 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -11,7 +11,6 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 - [PR #1418](https://github.com/nf-core/rnaseq/pull/1418) - Bump versions back to 3.17.0 after release - ## [[3.16.1](https://github.com/nf-core/rnaseq/releases/tag/3.16.1)] - 2024-10-16 ### Credits