From 1737edadee9eeb1692ecdc41efb693ddf1cab3dc Mon Sep 17 00:00:00 2001 From: Maxime U Garcia Date: Thu, 21 Sep 2023 12:58:29 +0200 Subject: [PATCH] Update nextflow.config support pipeline-specific configs --- nextflow.config | 11 ++++++----- 1 file changed, 6 insertions(+), 5 deletions(-) diff --git a/nextflow.config b/nextflow.config index 4da6ab70..cb64fcec 100644 --- a/nextflow.config +++ b/nextflow.config @@ -133,11 +133,12 @@ try { // Load nf-core/methylseq custom profiles from different institutions. // Warning: Uncomment only if a pipeline-specific instititutional config already exists on nf-core/configs! -// try { -// includeConfig "${params.custom_config_base}/pipeline/methylseq.config" -// } catch (Exception e) { -// System.err.println("WARNING: Could not load nf-core/config/methylseq profiles: ${params.custom_config_base}/pipeline/methylseq.config") -// } +try { + includeConfig "${params.custom_config_base}/pipeline/methylseq.config" +} catch (Exception e) { + System.err.println("WARNING: Could not load nf-core/config/methylseq profiles: ${params.custom_config_base}/pipeline/methylseq.config") +} + profiles { debug { dumpHashes = true