diff --git a/CHANGELOG.md b/CHANGELOG.md index 5f7ba4a..bc09d2d 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -22,6 +22,7 @@ Initial release of nf-core/createpanelrefs, created with the [nf-core](https://n - [#24](https://github.com/nf-core/createpanelrefs/pull/24) - Updates germlinecnvcaller subworkflow to use mappability and segmental duplications track - [#24](https://github.com/nf-core/createpanelrefs/pull/24) - Updates germlinecnvcaller and gens subworkflows to use custom names for panel of normals. - [#28](https://github.com/nf-core/createpanelrefs/pull/28) - Updates default args for gens subworkflow and made the parameters available from the command line. +- [#31](https://github.com/nf-core/createpanelrefs/pull/31) - Publish interval_list file from gens subworkflow by default. ### `Fixed` diff --git a/conf/modules/gens_pon.config b/conf/modules/gens_pon.config index 8ebd6cb..f64835e 100644 --- a/conf/modules/gens_pon.config +++ b/conf/modules/gens_pon.config @@ -40,6 +40,11 @@ process { ext.args = { ["--imr OVERLAPPING_ONLY", "--bin-length ${params.gens_bin_length}"].join(" ") } + publishDir = [ + mode: params.publish_dir_mode, + path: { "${params.outdir}/gens_pon/intervals" }, + saveAs: { filename -> filename.equals('versions.yml') ? null : filename } + ] } withName: '.*GENS_PON:GATK4_COLLECTREADCOUNTS' {