nf-core/callingcards: Changelog

The format is based on Keep a Changelog and this project adheres to Semantic Versioning.

1.0.0 - 2024-05-24

Credits

Special thanks to the following for their reviews and assistance:

`Fixed`

workflow datatype option for mammals workflow corrected to mammals
the modules running the callingCardsTools package were updated with the bioconda containers/conda paths. callingCardsTools updated to 1.2.0
template update to v2.14.1 nf-core modules updated
Nextflow splitFastq operator replaced by seqkit/split2 module
multiqc output is reverted back to include all samples for the entire run, rather than included in each multiplexed libraries' subdirectories

`Removed`

local bwa_aln_to_bam local module in favor of nf-core fastq_align_bwa subworkflow

`Added`

nf-core/subworkflow fastq_align_bwa subworkflow

`Changed`

input fasta channel now creates a meta map w/ key id. This id is adjusted in the maskfasta and concatfasta module
modules all updated to nf-core/modules current state

0.0.0dev - 2023-01-01

Initial release of nf-core/callingcards, created with the nf-core template.