From e46d3b74306c1c4ec4975a682e91a6297cc39f71 Mon Sep 17 00:00:00 2001 From: Harshil Patel Date: Fri, 16 Oct 2020 10:11:51 +0100 Subject: [PATCH] Update .github/workflows/awstest.yml --- .github/workflows/awstest.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/awstest.yml b/.github/workflows/awstest.yml index b4db19f..c4af089 100644 --- a/.github/workflows/awstest.yml +++ b/.github/workflows/awstest.yml @@ -40,4 +40,4 @@ jobs: --job-name nf-core-cageseq \ --job-queue $AWS_JOB_QUEUE \ --job-definition $AWS_JOB_DEFINITION \ - --container-overrides '{"command": ["nf-core/cageseq", "-r '"${GITHUB_SHA}"' -profile test --outdir s3://'"${AWS_S3_BUCKET}"'/cageseq/results-'"${GITHUB_SHA}"' -w s3://'"${AWS_S3_BUCKET}"'/cageseq/work-'"${GITHUB_SHA}"' -with-tower"], "environment": [{"name": "TOWER_ACCESS_TOKEN", "value": "'"$TOWER_ACCESS_TOKEN"'"}]}'cageseq/work-'"${GITHUB_SHA}"' -with-tower"], "environment": [{"name": "TOWER_ACCESS_TOKEN", "value": "'"$TOWER_ACCESS_TOKEN"'"}]}' + --container-overrides '{"command": ["nf-core/cageseq", "-r '"${GITHUB_SHA}"' -profile test --outdir s3://'"${AWS_S3_BUCKET}"'/cageseq/results-'"${GITHUB_SHA}"' -w s3://'"${AWS_S3_BUCKET}"'/cageseq/work-'"${GITHUB_SHA}"' -with-tower"], "environment": [{"name": "TOWER_ACCESS_TOKEN", "value": "'"$TOWER_ACCESS_TOKEN"'"}]}