From 262f74105d2ba63dd93b5db9464d9f7aea4a4887 Mon Sep 17 00:00:00 2001 From: Daniel-VM Date: Tue, 5 Nov 2024 15:21:44 +0100 Subject: [PATCH 1/2] uncomment required line for linting in --release mode --- nextflow.config | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/nextflow.config b/nextflow.config index e56b957..ff9faed 100644 --- a/nextflow.config +++ b/nextflow.config @@ -204,7 +204,7 @@ includeConfig !System.getenv('NXF_OFFLINE') && params.custom_config_base ? "${pa // Load nf-core/bacass custom profiles from different institutions. // TODO nf-core: Optionally, you can add a pipeline-specific nf-core config at https://github.com/nf-core/configs -// includeConfig !System.getenv('NXF_OFFLINE') && params.custom_config_base ? "${params.custom_config_base}/pipeline/bacass.config" : "/dev/null" +includeConfig !System.getenv('NXF_OFFLINE') && params.custom_config_base ? "${params.custom_config_base}/pipeline/bacass.config" : "/dev/null" // Set default registry for Apptainer, Docker, Podman, Charliecloud and Singularity independent of -profile // Will not be used unless Apptainer / Docker / Podman / Charliecloud / Singularity are enabled From e241ff879de1d36644c8e3d90e78a828003f0816 Mon Sep 17 00:00:00 2001 From: Daniel-VM Date: Tue, 5 Nov 2024 15:29:37 +0100 Subject: [PATCH 2/2] update changelog in #182 --- CHANGELOG.md | 1 + 1 file changed, 1 insertion(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index e0bb118..f160d6a 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -21,6 +21,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 ### `Fixed` +- [#182](https://github.com/nf-core/bacass/pull/182) Uncommented required line to pass linting test in `--release` mode. - [#179](https://github.com/nf-core/bacass/pull/179) Fixed matrix.test_name in linting and missing features from template 3.0.2. - [#178](https://github.com/nf-core/bacass/pull/178) Fixed bakta running only for one sample. - [#169](https://github.com/nf-core/bacass/pull/169) Fixed long reads polishing input channel.