From 84b58ac6089f828fdeddf2d8e46ebb057f1b8221 Mon Sep 17 00:00:00 2001 From: Daniel-VM Date: Mon, 23 Oct 2023 11:15:57 +0200 Subject: [PATCH] fix console indentation --- README.md | 20 ++++++++++---------- 1 file changed, 10 insertions(+), 10 deletions(-) diff --git a/README.md b/README.md index 1fe043fc..2a10a542 100644 --- a/README.md +++ b/README.md @@ -64,21 +64,21 @@ Each row represents a fastq file (single-end) or a pair of fastq files (paired e Default: Short read assembly with Unicycler, `--kraken2db` can be any [compressed database (`.tar.gz`/`.tgz`)](https://benlangmead.github.io/aws-indexes/k2): - ```console - nextflow run nf-core/bacass -profile --input samplesheet.tsv --kraken2db "https://genome-idx.s3.amazonaws.com/kraken/k2_standard_8gb_20210517.tar.gz" - ``` +```console +nextflow run nf-core/bacass -profile --input samplesheet.tsv --kraken2db "https://genome-idx.s3.amazonaws.com/kraken/k2_standard_8gb_20210517.tar.gz" +``` - Long read assembly with Miniasm: +Long read assembly with Miniasm: - ```console - nextflow run nf-core/bacass -profile --input samplesheet.tsv --assembly_type 'long' --assembler 'miniasm' --kraken2db "https://genome-idx.s3.amazonaws.com/kraken/k2_standard_8gb_20210517.tar.gz" - ``` +```console +nextflow run nf-core/bacass -profile --input samplesheet.tsv --assembly_type 'long' --assembler 'miniasm' --kraken2db "https://genome-idx.s3.amazonaws.com/kraken/k2_standard_8gb_20210517.tar.gz" +``` ```bash nextflow run nf-core/bacass \ - -profile \ - --input samplesheet.tsv \ - --outdir + -profile \ + --input samplesheet.tsv \ + --outdir ``` :::warning