Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add custom qiime reference database support to Ampliseq. #665

Closed
MatthewJM96 opened this issue Nov 28, 2023 · 2 comments
Closed

Add custom qiime reference database support to Ampliseq. #665

MatthewJM96 opened this issue Nov 28, 2023 · 2 comments

Comments

@MatthewJM96
Copy link

MatthewJM96 commented Nov 28, 2023

Implement an equivalent custom database flag as exists for Kraken and Dada (i.e. qiime_ref_tax_custom).

@d4straub
Copy link
Collaborator

A custom trained classifier can be already supplied with --classifier, but there is indeed no option equivalent to --dada_ref_tax_custom.

@d4straub
Copy link
Collaborator

Was solved in #667 & #673

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
Status: In progress
Development

No branches or pull requests

2 participants