diff --git a/conf/ref_databases.config b/conf/ref_databases.config index 688d571c..e9037960 100644 --- a/conf/ref_databases.config +++ b/conf/ref_databases.config @@ -298,44 +298,62 @@ params { } //UNITE for QIIME2, see https://unite.ut.ee/repository.php 'unite-fungi' { - title = "UNITE QIIME release for Fungi - Version 8.3" - file = [ "https://files.plutof.ut.ee/public/orig/C5/54/C5547B97AAA979E45F79DC4C8C4B12113389343D7588716B5AD330F8BDB300C9.tgz" ] - citation = "Abarenkov, Kessy; Zirk, Allan; Piirmann, Timo; Pöhönen, Raivo; Ivanov, Filipp; Nilsson, R. Henrik; Kõljalg, Urmas (2021): UNITE QIIME release for Fungi. Version 10.05.2021. UNITE Community. https://doi.org/10.15156/BIO/1264708" + title = "UNITE QIIME release for Fungi - Version 10.0" + file = [ "https://s3.hpc.ut.ee/plutof-public/original/db1d6ddb-a35d-48c5-8b1a-ad9dd3310c6d.tgz" ] + citation = "Abarenkov, Kessy; Zirk, Allan; Piirmann, Timo; Pöhönen, Raivo; Ivanov, Filipp; Nilsson, R. Henrik; Kõljalg, Urmas (2024): UNITE QIIME release for Fungi. Version 04.04.2024. UNITE Community. https://doi.org/10.15156/BIO/2959336" + fmtscript = "taxref_reformat_qiime_unite.sh" + } + 'unite-fungi=10.0' { + title = "UNITE QIIME release for Fungi - Version 10.0" + file = [ "https://s3.hpc.ut.ee/plutof-public/original/db1d6ddb-a35d-48c5-8b1a-ad9dd3310c6d.tgz" ] + citation = "Abarenkov, Kessy; Zirk, Allan; Piirmann, Timo; Pöhönen, Raivo; Ivanov, Filipp; Nilsson, R. Henrik; Kõljalg, Urmas (2024): UNITE QIIME release for Fungi. Version 04.04.2024. UNITE Community. https://doi.org/10.15156/BIO/2959336" + fmtscript = "taxref_reformat_qiime_unite.sh" + } + 'unite-fungi=9.0' { + title = "UNITE QIIME release for Fungi - Version 9.0" + file = [ "https://s3.hpc.ut.ee/plutof-public/original/3c22fbc5-ed9e-47a6-a85b-6c81268657e9.tgz" ] + citation = "Abarenkov, Kessy; Zirk, Allan; Piirmann, Timo; Pöhönen, Raivo; Ivanov, Filipp; Nilsson, R. Henrik; Kõljalg, Urmas (2023): UNITE QIIME release for Fungi. Version 18.07.2023. UNITE Community. https://doi.org/10.15156/BIO/2938079" fmtscript = "taxref_reformat_qiime_unite.sh" } 'unite-fungi=8.3' { title = "UNITE QIIME release for Fungi - Version 8.3" - file = [ "https://files.plutof.ut.ee/public/orig/C5/54/C5547B97AAA979E45F79DC4C8C4B12113389343D7588716B5AD330F8BDB300C9.tgz" ] + file = [ "https://s3.hpc.ut.ee/plutof-public/original/3652451d-7567-4871-a7aa-3ba6c63aa60b.tgz" ] citation = "Abarenkov, Kessy; Zirk, Allan; Piirmann, Timo; Pöhönen, Raivo; Ivanov, Filipp; Nilsson, R. Henrik; Kõljalg, Urmas (2021): UNITE QIIME release for Fungi. Version 10.05.2021. UNITE Community. https://doi.org/10.15156/BIO/1264708" fmtscript = "taxref_reformat_qiime_unite.sh" } 'unite-fungi=8.2' { title = "UNITE QIIME release for Fungi - Version 8.2" - file = [ "https://files.plutof.ut.ee/public/orig/98/AE/98AE96C6593FC9C52D1C46B96C2D9064291F4DBA625EF189FEC1CCAFCF4A1691.gz" ] + file = [ "https://s3.hpc.ut.ee/plutof-public/original/6b4e0baf-fc68-4e0e-8e4a-f5cf2d68bf98.gz" ] citation = "Abarenkov, Kessy; Zirk, Allan; Piirmann, Timo; Pöhönen, Raivo; Ivanov, Filipp; Nilsson, R. Henrik; Kõljalg, Urmas (2020): UNITE QIIME release for Fungi. Version 04.02.2020. UNITE Community. https://doi.org/10.15156/BIO/786385" fmtscript = "taxref_reformat_qiime_unite.sh" } 'unite-alleuk' { - title = "UNITE QIIME release for eukaryotes - Version 9.0" - file = [ "https://files.plutof.ut.ee/public/orig/8F/FC/8FFCC8A730E50FEEF8CFFEEFEF02A22FBCF7E02B7FD31C6649754834D2CB0E6F.tgz" ] - citation = "Abarenkov, Kessy; Zirk, Allan; Piirmann, Timo; Pöhönen, Raivo; Ivanov, Filipp; Nilsson, R. Henrik; Kõljalg, Urmas (2022): UNITE QIIME release for eukaryotes. Version 16.10.2022. UNITE Community. https://doi.org/10.15156/BIO/2483917" + title = "UNITE QIIME release for eukaryotes - Version 10.0" + file = [ "https://s3.hpc.ut.ee/plutof-public/original/711a503c-589d-4138-a76f-6a8b89460ecf.tgz" ] + citation = "Abarenkov, Kessy; Zirk, Allan; Piirmann, Timo; Pöhönen, Raivo; Ivanov, Filipp; Nilsson, R. Henrik; Kõljalg, Urmas (2024): UNITE QIIME release for eukaryotes. Version 04.04.2024. UNITE Community. https://doi.org/10.15156/BIO/2959338" + fmtscript = "taxref_reformat_qiime_unite.sh" + } + 'unite-alleuk=10.0' { + title = "UNITE QIIME release for eukaryotes - Version 10.0" + file = [ "https://s3.hpc.ut.ee/plutof-public/original/711a503c-589d-4138-a76f-6a8b89460ecf.tgz" ] + citation = "Abarenkov, Kessy; Zirk, Allan; Piirmann, Timo; Pöhönen, Raivo; Ivanov, Filipp; Nilsson, R. Henrik; Kõljalg, Urmas (2024): UNITE QIIME release for eukaryotes. Version 04.04.2024. UNITE Community. https://doi.org/10.15156/BIO/2959338" fmtscript = "taxref_reformat_qiime_unite.sh" } 'unite-alleuk=9.0' { title = "UNITE QIIME release for eukaryotes - Version 9.0" - file = [ "https://files.plutof.ut.ee/public/orig/8F/FC/8FFCC8A730E50FEEF8CFFEEFEF02A22FBCF7E02B7FD31C6649754834D2CB0E6F.tgz" ] - citation = "Abarenkov, Kessy; Zirk, Allan; Piirmann, Timo; Pöhönen, Raivo; Ivanov, Filipp; Nilsson, R. Henrik; Kõljalg, Urmas (2022): UNITE QIIME release for eukaryotes. Version 16.10.2022. UNITE Community. https://doi.org/10.15156/BIO/2483917" + file = [ "https://s3.hpc.ut.ee/plutof-public/original/ecc2ed00-1219-42c7-a951-fbe92b8cb733.tgz" ] + citation = "Abarenkov, Kessy; Zirk, Allan; Piirmann, Timo; Pöhönen, Raivo; Ivanov, Filipp; Nilsson, R. Henrik; Kõljalg, Urmas (2023): UNITE QIIME release for eukaryotes. Version 18.07.2023. UNITE Community. https://doi.org/10.15156/BIO/2938081" fmtscript = "taxref_reformat_qiime_unite.sh" } 'unite-alleuk=8.3' { title = "UNITE QIIME release for eukaryotes - Version 8.3" - file = [ "https://files.plutof.ut.ee/public/orig/48/29/4829D91F763E20F0F4376A60AA53FC9FBE6029A7D1BDC1B45347DD64EDE5D560.tgz" ] + file = [ "https://s3.hpc.ut.ee/plutof-public/original/93683063-613d-4190-877e-26a57a196fc7.tgz" ] citation = "Abarenkov, Kessy; Zirk, Allan; Piirmann, Timo; Pöhönen, Raivo; Ivanov, Filipp; Nilsson, R. Henrik; Kõljalg, Urmas (2021): UNITE QIIME release for eukaryotes. Version 10.05.2021. UNITE Community. https://doi.org/10.15156/BIO/1264819" fmtscript = "taxref_reformat_qiime_unite.sh" } 'unite-alleuk=8.2' { title = "UNITE QIIME release for eukaryotes - Version 8.2" - file = [ "https://files.plutof.ut.ee/public/orig/6E/0E/6E0EDD5592003B47C70A1B384C3C784AA32B726AC861CD7E2BD22AEB0278675E.gz" ] + file = [ "https://s3.hpc.ut.ee/plutof-public/original/f53a2174-9fc5-4d9f-8230-59f8772c6c5c.gz" ] citation = "Abarenkov, Kessy; Zirk, Allan; Piirmann, Timo; Pöhönen, Raivo; Ivanov, Filipp; Nilsson, R. Henrik; Kõljalg, Urmas (2020): UNITE QIIME release for eukaryotes. Version 04.02.2020. UNITE Community. https://doi.org/10.15156/BIO/786386" fmtscript = "taxref_reformat_qiime_unite.sh" } diff --git a/nextflow_schema.json b/nextflow_schema.json index 32717bce..35f925ba 100644 --- a/nextflow_schema.json +++ b/nextflow_schema.json @@ -457,13 +457,16 @@ "enum": [ "silva=138", "silva", + "unite-fungi", + "unite-fungi=10.0", + "unite-fungi=9.0", "unite-fungi=8.3", "unite-fungi=8.2", - "unite-fungi", + "unite-alleuk", + "unite-alleuk=10.0", "unite-alleuk=9.0", "unite-alleuk=8.3", "unite-alleuk=8.2", - "unite-alleuk", "greengenes85", "greengenes2", "greengenes2=2022.10"