From 2e65ec807d3d7916339f3e8839585951eead476f Mon Sep 17 00:00:00 2001 From: daniel Date: Thu, 27 Jul 2023 11:08:09 +0200 Subject: [PATCH] update README --- README.md | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/README.md b/README.md index 56e499a3..b214cc61 100644 --- a/README.md +++ b/README.md @@ -40,7 +40,8 @@ By default, the pipeline currently performs the following: - Taxonomical classification using DADA2, [SINTAX](https://doi.org/10.1101/074161) or [QIIME2](https://www.nature.com/articles/s41587-019-0209-9) - Excludes unwanted taxa, produces absolute and relative feature/taxa count tables and plots, plots alpha rarefaction curves, computes alpha and beta diversity indices and plots thereof ([QIIME2](https://www.nature.com/articles/s41587-019-0209-9)) - Calls differentially abundant taxa ([ANCOM](https://www.ncbi.nlm.nih.gov/pubmed/26028277)) -- Overall pipeline run summaries ([MultiQC](https://multiqc.info/)) +- Pipeline QC summaries ([MultiQC](https://multiqc.info/)) +- Overall pipeline html report ([R Markdown](https://github.com/rstudio/rmarkdown)) ## Usage