diff --git a/Dockerfile b/Dockerfile index c6edf69..4c10b29 100644 --- a/Dockerfile +++ b/Dockerfile @@ -259,6 +259,9 @@ RUN pip3 install pango_aliasor==0.3.0 RUN pip3 install pathogen-embed==3.0.0 RUN pip3 install xlrd==2.0.1 +# Install openpyxl for pandas in GenoFLU +RUN pip3 install openpyxl==3.1.0 + # 2. Add unpinned programs # Allow caching to be avoided from here on out in this stage by calling @@ -309,6 +312,7 @@ SHELL ["/bin/bash", "-e", "-u", "-o", "pipefail", "-c"] # less: for usability in an interactive prompt # libgomp1: for running FastTree # libsqlite3: for pyfastx (for Augur) +# ncbi-blast+: for GenoFLU in avian-flu # perl: for running VCFtools # ruby: may be used by workflows # sqlite3: for `augur merge` @@ -326,6 +330,7 @@ RUN apt-get update && apt-get install -y --no-install-recommends \ less \ libgomp1 \ libsqlite3-0 \ + ncbi-blast+ \ perl \ ruby \ sqlite3 \