From 289de38988fa015c216cc8fc5458aea55195d9c2 Mon Sep 17 00:00:00 2001 From: Jover Lee Date: Thu, 20 Feb 2025 15:41:09 -0800 Subject: [PATCH] ingest: Update geolocation_rules Add rules to switch the division and location for geolocations that do not follow the expected GenBank geolocation format. Following this change, the divisions are back down to 50 values which are the expected US states. Resolves --- ingest/defaults/geolocation_rules.tsv | 68 +++++++++++++++++++++++++++ 1 file changed, 68 insertions(+) diff --git a/ingest/defaults/geolocation_rules.tsv b/ingest/defaults/geolocation_rules.tsv index 1837b4f..a385c75 100644 --- a/ingest/defaults/geolocation_rules.tsv +++ b/ingest/defaults/geolocation_rules.tsv @@ -6,8 +6,76 @@ North America/USA/UNK/UNK North America/USA/?/? North America/USA/CA/* North America/USA/California/* North America/USA/CA/CA North America/USA/California/California North America/USA/KS/KS North America/USA/Kansas/Kansas +North America/USA/MA/* North America/USA/Massachusetts/* +North America/USA/ME/* North America/USA/Maine/* North America/USA/MI/MI North America/USA/Michigan/Michigan +North America/USA/NH/* North America/USA/New Hampshire/* North America/USA/NM/NM North America/USA/New Mexico/New Mexico North America/USA/OR/ North America/USA/Oregon/Oregon +North America/USA/RI/* North America/USA/Rhode Island/* North America/USA/TX/TX North America/USA/Texas/Texas +North America/USA/VA/* North America/USA/Virginia/* North America/USA/WY/WY North America/USA/Wyoming/Wyoming + +# Switch location and divisions +North America/USA/Barnstable/MA North America/USA/MA/Barnstable +North America/USA/Barrington/RI North America/USA/RI/Barrington +North America/USA/Beverly/MA North America/USA/MA/Beverly +North America/USA/Boston/MA North America/USA/MA/Boston +North America/USA/Bourne/MA North America/USA/MA/Bourne +North America/USA/Brewster/MA North America/USA/MA/Brewster +North America/USA/Cambridge/MA North America/USA/MA/Cambridge +North America/USA/Centerville/MA North America/USA/MA/Centerville +North America/USA/Chatham/MA North America/USA/MA/Chatham +North America/USA/Chelsea/MA North America/USA/MA/Chelsea +North America/USA/Cohasset/MA North America/USA/MA/Cohasset +North America/USA/Cranston/RI North America/USA/RI/Cranston +North America/USA/Dennis/MA North America/USA/MA/Dennis +North America/USA/Dover/NH North America/USA/NH/Dover +North America/USA/Eastham/MA North America/USA/MA/Eastham +North America/USA/Easthampton/MA North America/USA/MA/Easthampton +North America/USA/Essex/MA North America/USA/MA/Essex +North America/USA/Falmouth/MA North America/USA/MA/Falmouth +North America/USA/Franklin/MA North America/USA/MA/Franklin +North America/USA/Hampton/MA North America/USA/MA/Hampton +North America/USA/Hampton/NH North America/USA/NH/Hampton +North America/USA/Harvard/MA North America/USA/MA/Harvard +North America/USA/Harwich/MA North America/USA/MA/Harwich +North America/USA/Hudson/MA North America/USA/MA/Hudson +North America/USA/Hull/MA North America/USA/MA/Hull +North America/USA/Ipswich/MA North America/USA/MA/Ipswich +North America/USA/Kennebunk/ME North America/USA/ME/Kennebunk +North America/USA/Kittery/ME North America/USA/ME/Kittery +North America/USA/Lynn/MA North America/USA/MA/Lynn +North America/USA/Lynnfield/MA North America/USA/MA/Lynnfield +North America/USA/Madbury/NH North America/USA/NH/Madbury +North America/USA/Manchester/MA North America/USA/MA/Manchester +North America/USA/Medford/MA North America/USA/MA/Medford +North America/USA/Nahant/MA North America/USA/MA/Nahant +North America/USA/Nantucket/MA North America/USA/MA/Nantucket +North America/USA/Newbury/MA North America/USA/MA/Newbury +North America/USA/Newburyport/MA North America/USA/MA/Newburyport +North America/USA/North Dartmouth/MA North America/USA/MA/North Dartmouth +North America/USA/North Grafton/MA North America/USA/MA/North Grafton +North America/USA/Northbridge/MA North America/USA/MA/Northbridge +North America/USA/Orleans/MA North America/USA/MA/Orleans +North America/USA/Pepperell/MA North America/USA/MA/Pepperell +North America/USA/Plum Island/MA North America/USA/MA/Plum Island +North America/USA/Plymouth/MA North America/USA/MA/Plymouth +North America/USA/Plympton/MA North America/USA/MA/Plympton +North America/USA/Provincetown/MA North America/USA/MA/Provincetown +North America/USA/Quantico/VA North America/USA/VA/Quantico +North America/USA/Quincy/MA North America/USA/MA/Quincy +North America/USA/Salisbury/MA North America/USA/MA/Salisbury +North America/USA/Scituate/MA North America/USA/MA/Scituate +North America/USA/Somerville/MA North America/USA/MA/Somerville +North America/USA/South Boston/MA North America/USA/MA/South Boston +North America/USA/South Orleans/MA North America/USA/MA/South Orleans +North America/USA/Stow/MA North America/USA/MA/Stow +North America/USA/Tiverton/RI North America/USA/RI/Tiverton +North America/USA/Unknown/VA North America/USA/VA/Unknown +North America/USA/Warwick/RI North America/USA/RI/Warwick +North America/USA/Wellfleet/MA North America/USA/MA/Wellfleet +North America/USA/Whitinsville/MA North America/USA/MA/Whitinsville +North America/USA/Winthrop/MA North America/USA/MA/Winthrop +North America/USA/Yarmouth/MA North America/USA/MA/Yarmouth