From cb887f6fe69831005607af6ae0f05fbacf332aa1 Mon Sep 17 00:00:00 2001 From: Victor Lin <13424970+victorlin@users.noreply.github.com> Date: Fri, 19 Apr 2024 11:05:43 -0700 Subject: [PATCH] Reference new top-level name in quickstart build --- quickstart-build/Snakefile | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/quickstart-build/Snakefile b/quickstart-build/Snakefile index 3c9cf6f..bb18d24 100755 --- a/quickstart-build/Snakefile +++ b/quickstart-build/Snakefile @@ -15,7 +15,7 @@ SEGMENTS = ["ha"] generated JSON files in the auspice folder for each subtype and segment.""" rule all: input: - auspice_json = expand("auspice/flu_avian_{subtype}_{segment}.json", subtype=SUBTYPES, segment=SEGMENTS) + auspice_json = expand("auspice/avian-flu_{subtype}_{segment}.json", subtype=SUBTYPES, segment=SEGMENTS) """Specify all input files here. For this build, you'll start with input sequences from the example_data folder, which contain metadata information in the @@ -305,7 +305,7 @@ rule export: node_data = node_data_by_wildcards, auspice_config = files.auspice_config output: - auspice_json = "auspice/flu_avian_{subtype}_{segment}.json" + auspice_json = "auspice/avian-flu_{subtype}_{segment}.json" shell: """ augur export v2 \