From 33f5e3fa717b8101da1330303098c5cdc31ab678 Mon Sep 17 00:00:00 2001
From: David Meunier <david_meunier_79@hotmail.fr>
Date: Tue, 3 Dec 2019 14:09:01 +0100
Subject: [PATCH 1/2] Update README.rst

---
 README.rst | 5 ++++-
 1 file changed, 4 insertions(+), 1 deletion(-)

diff --git a/README.rst b/README.rst
index e5d4755a..e0d385fe 100644
--- a/README.rst
+++ b/README.rst
@@ -8,7 +8,10 @@
 
 .. image:: https://circleci.com/gh/neuropycon/ephypype.svg?style=svg
     :target: https://circleci.com/gh/neuropycon/ephypype
-
+    
+.. image:: https://zenodo.org/badge/92522975.svg
+   :target: https://zenodo.org/badge/latestdoi/92522975
+   
 README
 ******
 

From 57cc156fdf87e9d8314c1d0cc7d2684ea471388e Mon Sep 17 00:00:00 2001
From: David Meunier <david_meunier_79@hotmail.fr>
Date: Mon, 16 Dec 2019 14:28:27 +0100
Subject: [PATCH 2/2] Test release + modif HDF5 transpose (#95)

* added transpose option for ImportHDF5

* version 0.2
---
 ephypype/__init__.py          |  2 +-
 ephypype/import_data.py       |  8 ++++++--
 ephypype/nodes/import_data.py | 13 ++++++++++++-
 3 files changed, 19 insertions(+), 4 deletions(-)

diff --git a/ephypype/__init__.py b/ephypype/__init__.py
index 8ef797dc..73e63cff 100644
--- a/ephypype/__init__.py
+++ b/ephypype/__init__.py
@@ -1,3 +1,3 @@
 from . import interfaces  # noqa
 from . import gather  # noqa
-__version__ = '0.1'
+__version__ = '0.2'
diff --git a/ephypype/import_data.py b/ephypype/import_data.py
index 80811a62..d419983a 100644
--- a/ephypype/import_data.py
+++ b/ephypype/import_data.py
@@ -48,7 +48,7 @@ def write_hdf5(filename, data, dataset_name='dataset', dtype='f'):
     hf.close()
 
 
-def _read_hdf5(filename, dataset_name='dataset'):
+def _read_hdf5(filename, dataset_name='dataset', transpose=False):
 
     """
     Read hdf5 file
@@ -58,7 +58,8 @@ def _read_hdf5(filename, dataset_name='dataset'):
             hdf5 filename
         dataset_name : str
             name of dataset to create
-
+        transpose: bool
+            if the data needs to be transpose or not
     Outputs
         data : array, shape (n_vertices, n_times)
             raw data for whose the dataset is created
@@ -67,6 +68,9 @@ def _read_hdf5(filename, dataset_name='dataset'):
     hf = h5py.File(filename, 'r')
     data = hf[dataset_name][()]
 
+    if transpose:
+        data = np.transpose(data)
+
     old_path, basename, ext = split_f(filename)
     npy_filename = os.path.abspath(basename + '.npy')
     print(npy_filename)
diff --git a/ephypype/nodes/import_data.py b/ephypype/nodes/import_data.py
index be2fcda0..465562eb 100644
--- a/ephypype/nodes/import_data.py
+++ b/ephypype/nodes/import_data.py
@@ -90,6 +90,10 @@ class ImportHdf5InputSpec(BaseInterfaceInputSpec):
     data_field_name = traits.String('dataset', desc='Name of dataset',
                                     usedefault=True)
 
+    transpose = traits.Bool(
+        False, usedefault=True,
+        desc="If the matlab data have to be transposed once read")
+
 
 class ImportHdf5OutputSpec(TraitedSpec):
     """Output spec for ImportHdf5"""
@@ -113,6 +117,11 @@ class ImportHdf5(BaseInterface):
     data_field_name : string
         Name of the dataset
 
+    transpose:
+        type = Bool
+        default = False, usedefault = True,
+        desc = "If the matlab data have to be transposed once read")
+
     Outputs
     -------
     ts_file : str
@@ -126,7 +135,9 @@ def _run_interface(self, runtime):
 
         ts_hdf5_file = self.inputs.ts_hdf5_file
         data_field_name = self.inputs.data_field_name
-        self.ts_file = _read_hdf5(ts_hdf5_file, dataset_name=data_field_name)
+
+        self.ts_file = _read_hdf5(ts_hdf5_file, dataset_name=data_field_name,
+                                  transpose=self.inputs.transpose)
 
         return runtime