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How to specify what segmentation is associated with an image? #64

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jcohenadad opened this issue Sep 18, 2024 · 1 comment
Open

How to specify what segmentation is associated with an image? #64

jcohenadad opened this issue Sep 18, 2024 · 1 comment
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priority high anything within the big picture, not nit-picky

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@jcohenadad
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jcohenadad commented Sep 18, 2024

From version: eef16bc

After loading a folder (checked no BIDS), I'm seeing the list of NIfTi images:

image

But at this point, what is unclear to me is:

  • how can I associate the existing segmentation (that are located under the derivatives folder) with each image?
  • for new segmentation, how can I specify their file name upon saving?

There is a path that is shown below the 'interpolate' button:

image

What does this path correspond to? If it is the segmentation, I suggest adding a clear title above that path to indicate what this is. Also, if it is the segmentation, then what is the logic to retrieve that file name? I see it is under derivatives, but nowhere in the config I specified that path:

image

Also, more problematic: that file name refers to the wrong segmentation (the subject name does not match between the image and the seg).

@AcastaPaloma AcastaPaloma self-assigned this Oct 16, 2024
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AcastaPaloma commented Oct 16, 2024

I don't think that I am able to replicate the problem of names not matching:
image
Is it possible to provide the steps to reach that bug?

@jcohenadad

@AcastaPaloma AcastaPaloma added the priority high anything within the big picture, not nit-picky label Oct 20, 2024
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