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https://github.com/spinalcordtoolbox/manual-correction is a related software tool that has been developed at NeuroPoly. This purpose of this software is to orchestrate the correction and/or generation of segmentation/labels for BIDS MRI data.
There has been discussions about merging the two projects, see notably:
Below are the specific features that are inherent to manual-correction, to see whether it makes sense to try to add them to SlicerCART:
Pointwise labeling (ie: single voxel with specific integer value)
Related to the previous point: manual-correction was relying on sct_label_utils which has a very convenient interface to quickly create pointwise labels in the spinal cord.
Reads BIDS-structured datasets, and for example, parses through the file names for annotating specific contrasts
Script package_for_correction to zip-package a subset of the dataset to copy them somewhere else (eg: copy from the server to local computer for manual correction, then copy them back to the server).
Relying on YAML files that include custom keywords that define the type of segmentation/labels to be performed on the images.
https://github.com/spinalcordtoolbox/manual-correction is a related software tool that has been developed at NeuroPoly. This purpose of this software is to orchestrate the correction and/or generation of segmentation/labels for BIDS MRI data.
There has been discussions about merging the two projects, see notably:
Below are the specific features that are inherent to manual-correction, to see whether it makes sense to try to add them to SlicerCART:
sct_label_utils
which has a very convenient interface to quickly create pointwise labels in the spinal cord.The text was updated successfully, but these errors were encountered: