From 778c9654f6556e6c65784e3e1513d287c039035f Mon Sep 17 00:00:00 2001 From: splis Date: Sat, 30 Mar 2024 09:57:32 -0400 Subject: [PATCH] disabled crop for "flash filet" :) --- js/brainchop/mainParameters.js | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/js/brainchop/mainParameters.js b/js/brainchop/mainParameters.js index cd31493..5fa1890 100644 --- a/js/brainchop/mainParameters.js +++ b/js/brainchop/mainParameters.js @@ -113,9 +113,9 @@ isBatchOverlapEnable: false, //create extra overlap batches for inference numOverlapBatches: 0, //Number of extra overlap batches for inference enableTranspose : true, // Keras and tfjs input orientation may need a tranposing step to be matched - enableCrop: true, // For speed-up inference, crop brain from background before feeding to inference model to lower memory use. - cropPadding: 2, // Padding size add to cropped brain - autoThreshold: 0.1, // Threshold between 0 and 1, given no preModel and tensor is normalized either min-max or by quantiles. Will remove noisy voxels around brain + enableCrop: false, // For speed-up inference, crop brain from background before feeding to inference model to lower memory use. + cropPadding: 0, // Padding size add to cropped brain + autoThreshold: 0, // Threshold between 0 and 1, given no preModel and tensor is normalized either min-max or by quantiles. Will remove noisy voxels around brain enableQuantileNorm: false, // Some models needs Quantile Normaliztion. filterOutWithPreMask: false, // Can be used to multiply final output with premodel output mask to crean noisy areas enableSeqConv: false, // For low memory system and low configuration, enable sequential convolution instead of last layer