forked from nilearn/nilearn.github.io
-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathindex.html
326 lines (287 loc) · 12.9 KB
/
index.html
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
<!DOCTYPE html>
<html xmlns="http://www.w3.org/1999/xhtml" lang="en">
<head>
<meta http-equiv="X-UA-Compatible" content="IE=Edge" />
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
<title>Nilearn: Statistical Analysis for NeuroImaging in Python — Machine learning for NeuroImaging</title>
<link rel="stylesheet" href="_static/nature.css" type="text/css" />
<link rel="stylesheet" href="_static/pygments.css" type="text/css" />
<link rel="stylesheet" type="text/css" href="_static/gallery.css" />
<link rel="stylesheet" type="text/css" href="_static/gallery-binder.css" />
<link rel="stylesheet" type="text/css" href="_static/gallery-dataframe.css" />
<script type="text/javascript" id="documentation_options" data-url_root="./" src="_static/documentation_options.js"></script>
<script type="text/javascript" src="_static/jquery.js"></script>
<script type="text/javascript" src="_static/underscore.js"></script>
<script type="text/javascript" src="_static/doctools.js"></script>
<script type="text/javascript" src="_static/language_data.js"></script>
<script type="text/javascript" src="_static/copybutton.js"></script>
<link rel="shortcut icon" href="_static/favicon.ico"/>
<link rel="search" title="Search" href="search.html" />
<link rel="next" title="A Quick Guide to Migrating Nistats Code to Nilearn" href="nistats_migration.html" />
<meta content="True" name="HandheldFriendly">
<meta name="viewport" content="width=device-width, initial-scale=1.0, maximum-scale=1.0, user-scalable=0">
<meta name="keywords" content="nilearn, neuroimaging, python, neuroscience, machinelearning">
<script type="text/javascript">
function updateTopMenuPosition(height, width) {
if($(window).scrollTop() > height && $(window).outerWidth() > 1024) {
//begin to scroll
$('.related-wrapper').css("z-index", 1000);
$('.related-wrapper').css("position", "sticky");
$('.related-wrapper').css("top", 0);
$('.related-wrapper').css("width", width)
} else {
//lock it back into place
$('.related-wrapper').css("position", "relative");
$('.related-wrapper').css("top", 0)
}
}
$(function() {
var banner_height = $('#logo-banner').outerHeight();
var banner_width = $('#logo-banner').outerWidth();
var width = $('.related-wrapper').css("height", $('.related').outerHeight());
updateTopMenuPosition(banner_height, width);
$(window).scroll(function(event) {
updateTopMenuPosition(banner_height, width)
});
$(window).resize(function(event) {
var banner_width = $('#logo-banner').outerWidth();
var menu_height = $('.related').outerHeight();
$('.related').css("width", banner_width);
$('.related-wrapper').css("height", menu_height);
updateTopMenuPosition(banner_height, width)
})
});
</script>
<script type="text/javascript" src="_static/jquery.jcarousel.min.js"></script>
<script type="text/javascript">
(function($) {
$(function() {
$('.jcarousel').jcarousel();
$('.jcarousel-control-prev')
.on('active.jcarouselcontrol', function() {
$(this).removeClass('inactive');
})
.on('inactive.jcarouselcontrol', function() {
$(this).addClass('inactive');
})
.jcarouselControl({
target: '-=1'
});
$('.jcarousel-control-next')
.on('active.jcarouselcontrol', function() {
$(this).removeClass('inactive');
})
.on('inactive.jcarouselcontrol', function() {
$(this).addClass('inactive');
})
.jcarouselControl({
target: '+=1'
});
$('.jcarousel-pagination')
.on('active.jcarouselpagination', 'a', function() {
$(this).addClass('active');
})
.on('inactive.jcarouselpagination', 'a', function() {
$(this).removeClass('active');
})
.jcarouselPagination();
});
})(jQuery);
</script>
<script type="text/javascript">
var _gaq = _gaq || [];
_gaq.push(['_setAccount', 'UA-41920728-1']);
_gaq.push(['_trackPageview']);
(function() {
var ga = document.createElement('script'); ga.type = 'text/javascript'; ga.async = true;
ga.src = ('https:' == document.location.protocol ? 'https://ssl' : 'http://www') + '.google-analytics.com/ga.js';
var s = document.getElementsByTagName('script')[0]; s.parentNode.insertBefore(ga, s);
})();
</script>
</head><body>
<div id="logo-banner">
<div class="logo">
<a href="#">
<img src="_static/nilearn-logo.png" alt="Nilearn logo" border="0" />
</a>
</div>
<!-- A tag cloud to make it easy for people to find what they are
looking for -->
<div class="tags">
<ul>
<li>
<big><a href="auto_examples/decoding/plot_haxby_anova_svm.html">SVM</a></big>
</li>
<li>
<small><a href="connectivity/parcellating.html">Ward
clustering</a></small>
</li>
<li>
<a href="decoding/searchlight.html">Searchlight</a>
</li>
<li>
<big><a href="connectivity/resting_state_networks.html">ICA</a></big>
</li>
<li>
<a href="manipulating_images/data_preparation.html">Nifti IO</a>
</li>
<li>
<a href="modules/reference.html#module-nilearn.datasets">Datasets</a>
</li>
</ul>
</div>
<div class="banner">
<h1>Nilearn:</h1>
<h2>Statistics for NeuroImaging in Python</h2>
</div>
<div class="search_form">
<div class="gcse-search" id="cse" style="width: 100%;"></div>
<script>
(function() {
var cx = '017289614950330089114:elrt9qoutrq';
var gcse = document.createElement('script');
gcse.type = 'text/javascript';
gcse.async = true;
gcse.src = 'https://cse.google.com/cse.js?cx=' + cx;
var s = document.getElementsByTagName('script')[0];
s.parentNode.insertBefore(gcse, s);
})();
</script>
</div>
</div>
<div class=related-wrapper>
<div class="related" role="navigation" aria-label="related navigation">
<h3>Navigation</h3>
<ul>
<li class="right" style="margin-right: 10px">
<a href="py-modindex.html" title="Python Module Index"
>modules</a></li>
<li class="right" >
<a href="nistats_migration.html" title="A Quick Guide to Migrating Nistats Code to Nilearn"
accesskey="N">next</a> |</li>
<li><a href="#">Nilearn Home</a> | </li>
<li><a href="user_guide.html">User Guide</a> | </li>
<li><a href="auto_examples/index.html">Examples</a> | </li>
<li><a href="modules/reference.html">Reference</a> | </li>
<li id="navbar-about"><a href="authors.html">About</a>| </li>
<li id="navbar-ecosystem"><a href="http://www.nipy.org/">Nipy ecosystem</a></li>
</ul>
</div>
</div>
<div class="document">
<div class="documentwrapper">
<div class="bodywrapper">
<div class="body" role="main">
<div class="index-paragraph docutils container">
<p>Nilearn enables <strong>approachable and versatile analyses of brain
volumes</strong>. It provides statistical and machine-learning tools, with
<strong>instructive documentation & open community</strong>.</p>
<p>It supports general linear model (GLM) based analysis and leverages the <a class="reference external" href="http://scikit-learn.org">scikit-learn</a> Python toolbox
for multivariate statistics with applications such as predictive modelling,
classification, decoding, or connectivity analysis.</p>
<p>Nilearn now includes the functionality of <a class="reference external" href="https://nistats.github.io">Nistats</a>.
<a class="reference internal" href="nistats_migration.html#nistats-migration"><span class="std std-ref">Here’s a guide to replacing Nistats imports to work in Nilearn.</span></a></p>
</div>
<div id="index-grid" class="section group">
<div class="col span_1_of_3">
<h3><a
href="introduction.html#python-for-neuroimaging-a-quick-start">First Steps</a></h3>
<p>Get started with nilearn</p>
<h3><a href="auto_examples/index.html"> Examples</a></h3>
<p>Visit our example gallery</p>
<h3><a href="user_guide.html"> User Guide</a></h3>
<p>Browse the full documentation</p>
</div>
<div class="col span_2_of_3">
<div class="jcarousel-wrapper">
<div class="jcarousel"><ul class="simple">
<li><a class="reference external" href="auto_examples/01_plotting/plot_demo_glass_brain.html"><img alt="glass_brain" src="_images/sphx_glr_plot_demo_glass_brain_002.png" /></a></li>
<li><a class="reference external" href="auto_examples/01_plotting/plot_3d_map_to_surface_projection.html"><img alt="surface_plot" src="_images/sphx_glr_plot_3d_map_to_surface_projection_001.png" /></a></li>
<li><a class="reference external" href="auto_examples/02_decoding/plot_oasis_vbm.html"><img alt="oasis_weights" src="_images/sphx_glr_plot_oasis_vbm_002.png" /></a></li>
<li><a class="reference external" href="auto_examples/03_connectivity/plot_inverse_covariance_connectome.html"><img alt="connectome" src="_images/sphx_glr_plot_inverse_covariance_connectome_004.png" /></a></li>
<li><a class="reference external" href="auto_examples/03_connectivity/plot_data_driven_parcellations.html"><img alt="rest_parcellations" src="_images/sphx_glr_plot_data_driven_parcellations_001.png" /></a></li>
<li><a class="reference external" href="auto_examples/03_connectivity/plot_compare_decomposition.html"><img alt="canica" src="_images/sphx_glr_plot_compare_decomposition_011.png" /></a></li>
<li><a class="reference external" href="auto_examples/02_decoding/plot_haxby_frem.html"><img alt="tvl1_haxby" src="_images/sphx_glr_plot_haxby_frem_001.png" /></a></li>
<li><a class="reference external" href="auto_examples/plot_decoding_tutorial.html"><img alt="haxby_weights" src="_images/sphx_glr_plot_haxby_anova_svm_001.png" /></a></li>
<li><a class="reference external" href="auto_examples/02_decoding/plot_haxby_searchlight.html"><img alt="searchlight" src="_images/sphx_glr_plot_haxby_searchlight_001.png" /></a></li>
</ul>
</div>
<a href="#" class="jcarousel-control-prev">‹</a>
<a href="#" class="jcarousel-control-next">›</a>
<p class="jcarousel-pagination">
</p>
</div>
</div>
</div>
<div style="clear: left"></div><div class="toctree-wrapper compound">
</div>
<p>Nilearn is part of the <a class="reference external" href="http://nipy.org">NiPy ecosystem</a>.</p>
</div>
</div>
</div>
<div class="sphinxsidebar" role="navigation" aria-label="main navigation">
<div class="sphinxsidebarwrapper">
<h4> News </h4>
<ul>
<li><p><strong>November 2020</strong>: <a href="whats_new.html#v0-7-0">Nilearn 0.7.0 released</a>
</p></li>
<li><p><strong>February 2020</strong>: <a href="whats_new.html#v0-6-2">Nilearn 0.6.2 released</a>
</p></li>
<li><p><strong>January 2020</strong>: <a href="whats_new.html#v0-6-1">Nilearn 0.6.1 released</a>
</p></li>
</ul>
<ul>
<li><p> <strong>Ongoing</strong>:
<a href="whats_new.html"</a>What's new</em>.
</p></li>
</ul>
<h4> Software </h4>
<ul class="simple">
<li>
<div id="download-container">
<a href="introduction.html#installation" class="btn btn-primary">Installation</a>
</div>
</li>
</ul>
<h4> Development </h4>
<ul class="simple">
<li><p><a class="reference external"
href="https://github.com/nilearn/nilearn">Nilearn on GitHub</a></p></li>
<li><p>All material Free Software: <strong>BSD license</strong> (3 clause).</p></li>
<li><p><a href="authors.html">Authors</a></p></li>
<li><p><a href="development.html">Contributing</a></p></li>
</ul>
<h4> Giving credit </h4>
<ul class="simple">
<li><p>Please consider <a href="authors.html#citing">citing the
papers</a>.</p></li>
</ul>
<h4>Next topic</h4>
<p class="topless"><a href="nistats_migration.html"
title="next chapter">A Quick Guide to Migrating Nistats Code to Nilearn</a></p>
<div id="searchbox" style="display: none" role="search">
<h3>Quick search</h3>
<div class="searchformwrapper">
<form class="search" action="search.html" method="get">
<input type="text" name="q" />
<input type="submit" value="Go" />
<input type="hidden" name="check_keywords" value="yes" />
<input type="hidden" name="area" value="default" />
</form>
</div>
</div>
<script type="text/javascript">$('#searchbox').show(0);</script>
</div>
</div>
<div class="clearer"></div>
</div>
<div class="footer">
© The nilearn developers 2010-2020.
Created using <a href="http://sphinx.pocoo.org/">Sphinx</a> 1.8.5.
<span style="padding-left: 5ex;">
<a href="_sources/index.rst.txt"
rel="nofollow">Show this page source</a>
</span>
</div>
</body>
</html>