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Request download data NeuroMOSAICS #3

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LisonK opened this issue Feb 4, 2025 · 18 comments
Open

Request download data NeuroMOSAICS #3

LisonK opened this issue Feb 4, 2025 · 18 comments
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@LisonK
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LisonK commented Feb 4, 2025

PLEASE ANSWER THE FOLLOWING QUESTIONS

  1. πŸ“‚ Which preprint repository will use this dataset for a NeuroLibre submission?

https://github.com/LisonK/NeuroMOSAICS/

  1. πŸ“„ Does the repository contain a binder/data_requirements.json file?

βœ… Yes

  1. πŸ”— Please provide a download Link:

https://osf.io/54vhx

https://osf.io/kpb7x

  1. 🫣 What is the data size (please indicate the size after decompression):

🟠 500 - 2048 MB

@agahkarakuzu
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@roboneuro cache data for https://github.com/LisonK/NeuroMOSAICS

@roboneuro
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Pinging roboneuro to download the data for LisonK/NeuroMOSAICS

@roboneuro
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roboneuro commented Feb 5, 2025

πŸ”΄ DOWNLOAD (CACHE) DATA

Status: Failed ec71bd69
Last updated: 2025-02-05 07:48:55 PST

Data download has failed: Expecting property name enclosed in double quotes: line 2 column 3 (char 4)

@LisonK
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LisonK commented Feb 6, 2025

Modifications of binder/data_requirements.json file done ("dataset1" and "dataset 2").

@agahkarakuzu
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@roboneuro cache data for https://github.com/LisonK/NeuroMOSAICS

@roboneuro
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Pinging roboneuro to download the data for LisonK/NeuroMOSAICS

@roboneuro
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roboneuro commented Feb 10, 2025

πŸ”΄ DOWNLOAD (CACHE) DATA

Status: Failed 9e726acb
Last updated: 2025-02-10 08:32:52 PST

Data download has failed: 'projectName'

@agahkarakuzu
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@roboneuro cache data for https://github.com/LisonK/NeuroMOSAICS

@roboneuro
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Pinging roboneuro to download the data for LisonK/NeuroMOSAICS

@roboneuro
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roboneuro commented Feb 10, 2025

πŸ”΄ DOWNLOAD (CACHE) DATA

Status: Failed c540e567
Last updated: 2025-02-10 08:49:37 PST

Data download has failed: 'projectName'

@agahkarakuzu
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@roboneuro cache data for https://github.com/LisonK/NeuroMOSAICS

@roboneuro
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Pinging roboneuro to download the data for LisonK/NeuroMOSAICS

@roboneuro
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⚫ DOWNLOAD (CACHE) DATA

Status: Waiting for task assignment
Last updated: 2025-02-10 09:10:31 PST

ℹ️ See details
Celery task assigned successfully. Task ID: d361bca0-6af5-4120-b530-ccbd3824050a

@roboneuro
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roboneuro commented Feb 10, 2025

πŸ”΄ DOWNLOAD (CACHE) DATA

Status: Failed d361bca0
Last updated: 2025-02-10 09:10:36 PST

Data download has failed: 'projectName'

@agahkarakuzu
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@LisonK the data has been downloaded:

neuromosaics/osfstorage$ ls -lah
total 32K
drwxrwxr-x 8 ubuntu ubuntu 4.0K Feb 10 17:25 .
drwxrwxr-x 3 ubuntu ubuntu 4.0K Feb 10 17:26 ..
drwxrwxr-x 2 ubuntu ubuntu 4.0K Feb 10 17:24 nhp
drwxrwxr-x 2 ubuntu ubuntu 4.0K Feb 10 17:23 rat
drwxrwxr-x 2 ubuntu ubuntu 4.0K Feb 10 17:25 rat0
drwxrwxr-x 2 ubuntu ubuntu 4.0K Feb 10 17:25 rat1
drwxrwxr-x 2 ubuntu ubuntu 4.0K Feb 10 17:24 rat2
drwxrwxr-x 2 ubuntu ubuntu 4.0K Feb 10 17:26 rat3

It will be available such as data/neuromosaics/osfstorage/rat0, ... data/neuromosaics/osfstorage/rat3, data/neuromosaics/osfstorage/nhp.

That osfstorage was not expected, but I guess came with the python osf library our server is using to get your data. Do you want me to remove it?

@LisonK
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LisonK commented Feb 12, 2025

Perfect thank you ! Yes you can remove osfstorage , but I can still work with data/neuromosaics/osfstorage and change the path in the notebooks if it's more convenient.

@agahkarakuzu
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Can you use the data as is right now if possible? These are simple modifications we can do later on.

@LisonK
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LisonK commented Feb 12, 2025

Yes no problem, thank you !

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